summaryrefslogtreecommitdiff
path: root/src/common
AgeCommit message (Collapse)Author
2017-12-08File formats for iso cuboid and perseus in the Python versionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3057 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6eb0a025d8549320e03727ce491563b2a941c82d
2017-12-06Merge C++ version of persistence representationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_bis@3043 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6421c7cbe670fad1a8900ccc0ea6ff32297dd5e7
2017-12-06Merge add_utils_in_gudhi_v2 branch after 2nd round of reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3041 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ad134cc2b6756e20afc8d9db9e40c5af87d09f9d
2017-11-24Move Perseus file format to file_formats.hcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2949 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e2f0dcf1efdc3c26ff609b7a14d37a604a9c162f
2017-11-22Rename some utilities + some fix in the doccjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2942 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e7fe4af0f7d54ed580e557fe7ff9bc57ced2baa9
2017-11-22Fix typocjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2940 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b888519a9985ae84fcf5788eab66fc5b574936f8
2017-11-22Merge graph_expansion_blocker fix from cech_complex branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2932 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c6397609dbf92cad0fdd6c0fc5365b96657edec9
2017-11-20Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2922 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9ea024337f05cfc4f9a1d645c6e6ee9aac9700ba
2017-11-16Merge last trunk modificationsvrouvrea
Fix doxygen warnings git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2888 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b80b28a10495b6f2519b53885b1bf31be85ed7ac
2017-11-15Add iso-cuboid file formatcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2882 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ad82867ef7523c4a03fdb89054e5bd7b8d40f7da
2017-11-07git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2840 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9037e52ab98b2b9c699c104aa4da45bf6d74cfc7
2017-11-07git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2838 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aa674c458f110c5c7cc3f5c987b921fcc96e3e7e
2017-10-26Fix sentencecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2807 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8d914e747993fc8c1883ee6c0807c3335c816a3e
2017-10-05Merge the branch graph_expansion_with_blocker_oracle for the Simplex_treevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2759 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa4cf79042f8e9b162617a5a571e06a3feb4c191
2017-10-05Move some utils + update doc so that utilities are shown as examplescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2756 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a707d174a382da7efad3d12a73bb66d2c90da599
2017-10-04Document utilies in README files using Markdown + move/rename some utilitiescjamin
Only missing doc for now: Garland_heckbert git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2752 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ba0113762b6622130835dc9e372acfae29c2db8
2017-09-29Merge from trunkcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2732 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7872aa224ee471c05e9213b81192d304254e608a
2017-09-27Fix some cpplintsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_remove_useless_global_filtration@2721 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 76b127e54d9511b70294ab48336ca6dbd6fdb1d6
2017-09-12Bottleneck does not require Eigen3 (C++ and Python)vrouvrea
Doc issue about examples requiring Eigen3 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cythonization_improvement@2666 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5e127d4e8137a44ee3bd688c32653acfb4a55007
2017-09-11Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2661 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2625074cdd2104ead455753c2f2fb8583be89478
2017-08-17Add file formats for Python.vrouvrea
Binding for persistence write files Launch py.test with the command "python -m pytest" (shall work everywhere) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2611 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9443a7eb5b580ece7708ff57949ad08339c1c5c3
2017-08-10Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2609 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7bd35b1a3515450f92efd4cb44d0b81d1e215dd3
2017-08-10Some modifications to file format documentation (utf8 test)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2608 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2590184676603521a3ab175834670bb47a80c93b
2017-08-10utf8 file formatvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2606 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0541d16e8818dfc9cd6ecd7960c0ec5638cd8277
2017-08-10Add Gudhi namespacevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2605 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6f004d1f7f8a741081181c1ead026fb952a21e6c
2017-08-09Merge last trunk modificationsvrouvrea
persistence file reader Python interface persistence_graphical_tools improvement (max_plots and max_barcodes, and from a persistence file) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2604 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: db80333d4f34151be0c32024af597d90d221a97f
2017-08-08Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2602 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 09efbfb4db1c3bab606b63b3365ca5451ab3d029
2017-08-08Fix bug in read_persistence_intervals_in_dimension for only_this_dimvrouvrea
Add unitary tests for read_persistence Add .clang-format to clang format new files git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2601 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 28e870973f9ebd686d503246202fa6d6a549e9e3
2017-07-06Plot functions now returns a plot that can be modified before to be shownvrouvrea
Add confidence band in plot_persistence_diagram Cythonization of read_lower_triangular_matrix_from_csv_file and read_persistence_intervals functions Add Python tests of read functions git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2590 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 522ec31e9ad3a9a688875612d246114704b8c74e
2017-07-06Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2588 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 551995fb34cfdc3c170ae5cfdaf2b249dcb03f8f
2017-07-06Doc example additionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2587 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: eec20e1b4242460fbe97a9622d69ad35bfdca8b7
2017-07-05Checkin tests and fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2586 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0f9cbe3d6b94e939e151dea989ae99f7e4f3bffa
2017-07-04Add Gudhi namespace for reader_utilsvrouvrea
Add confidence band in persistence_graphical_tools.py Persistence_diagram returns a plot that is no more showed. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2582 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4125f4f525057e89c8b0d5d164ea0b9d1df1bd72
2017-06-28Merge of branch boost_system_no_deprecated_test in order to :vrouvrea
- remove boost_system library dependency - repair conda package compilation issues found - Use Gudhi::Clock instead of boost::date_time library git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2565 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d68764ab186bd44f2b2253ba21ad1c0e09584455
2017-06-28Merge of the branch read_persistence_from_filevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2564 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b534b8866e25cf86db1483d141ac217c82b36384
2017-06-26A test of Cech complex with oracle blockervrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2563 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6c4325dd1ca53a92f4f3de3ed32323c8b6505f5d
2017-06-16Merge last modifications from read_persistence_from_file branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2551 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7b90e15bc5128dc9be94c6fa21028e1deb20647a
2017-06-16Fix auto lambda (requires C++14) compilation issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2550 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: df64cfdde77500b06f00432a1d1532518cd4dd37
2017-06-14Remove birth<=death check (should be done by the caller if necessary)cjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2544 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ce50159f4bf779a2a42d357cf1c2aa290feaf9b9
2017-06-13Merge read_persistence_from_file into persistence_representation_integrationcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2539 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2bfc0f855b4814946c5cad892d6314d147db1caf
2017-06-13Add header and namespace + remove unnecessary includecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2537 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc2da43c18649c606ac4760a923684f9eef0c95e
2017-06-09Rewrite Contraction and Skeleton blocker time display using Gudhi::Clockvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2535 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e2b5c1e152fd7bdca9d07db0390944409942ba53
2017-06-09Create a new page for file formatscjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2534 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dc0d836b9df68a3f339dcbc6b8ff51577faf3d7b
2017-06-09Throw exceptions if file not foundcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2533 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b412f432aeac6aef07ac2d9d65d50dc8f508c2e6
2017-06-09Change names and adapt examplecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2531 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 833a51dd03ddccca38c6011834bb58667d63ccbf
2017-06-09Remove boost date_time dependenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2529 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: daa13fc0046ffdd72577bb1b399fcbdc8ef5033c
2017-06-02Fix install issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2510 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c081183c9876761dace595a09ec04fe220846ed6
2017-06-02Get rid of Boost_system library linkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2509 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 52deba0f2212767b99b801810d356e55417225db
2017-06-01Doc for "pers" file formatcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2500 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2da948fefffcb1961961e3111c89f400f23b65d3
2017-06-01Use make_function_output_iterator to avoid code duplicationcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2498 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d9a9d3f72ef4af17f4a9b8263526df69498090c
generated by cgit v1.2.3 (git 2.39.1) at 2024-07-05 00:38:13 +0000