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2017-06-28Merge of the branch read_persistence_from_filevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2564 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b534b8866e25cf86db1483d141ac217c82b36384
2017-06-26A test of Cech complex with oracle blockervrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2563 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6c4325dd1ca53a92f4f3de3ed32323c8b6505f5d
2017-06-16Merge last modifications from read_persistence_from_file branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2551 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7b90e15bc5128dc9be94c6fa21028e1deb20647a
2017-06-16Fix auto lambda (requires C++14) compilation issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2550 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: df64cfdde77500b06f00432a1d1532518cd4dd37
2017-06-14Remove birth<=death check (should be done by the caller if necessary)cjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2544 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ce50159f4bf779a2a42d357cf1c2aa290feaf9b9
2017-06-13Merge read_persistence_from_file into persistence_representation_integrationcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2539 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2bfc0f855b4814946c5cad892d6314d147db1caf
2017-06-13Add header and namespace + remove unnecessary includecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2537 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc2da43c18649c606ac4760a923684f9eef0c95e
2017-06-09Rewrite Contraction and Skeleton blocker time display using Gudhi::Clockvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2535 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e2b5c1e152fd7bdca9d07db0390944409942ba53
2017-06-09Create a new page for file formatscjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2534 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dc0d836b9df68a3f339dcbc6b8ff51577faf3d7b
2017-06-09Throw exceptions if file not foundcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2533 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b412f432aeac6aef07ac2d9d65d50dc8f508c2e6
2017-06-09Change names and adapt examplecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2531 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 833a51dd03ddccca38c6011834bb58667d63ccbf
2017-06-09Remove boost date_time dependenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2529 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: daa13fc0046ffdd72577bb1b399fcbdc8ef5033c
2017-06-02Fix install issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2510 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c081183c9876761dace595a09ec04fe220846ed6
2017-06-02Get rid of Boost_system library linkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2509 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 52deba0f2212767b99b801810d356e55417225db
2017-06-01Doc for "pers" file formatcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2500 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2da948fefffcb1961961e3111c89f400f23b65d3
2017-06-01Use make_function_output_iterator to avoid code duplicationcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2498 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d9a9d3f72ef4af17f4a9b8263526df69498090c
2017-05-31Mention utilitiescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2495 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 40a98c7df253c4938fdadfb8b6ec59174c9f1f4f
2017-05-31Check if birth <= deathcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2488 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc7aeca7ca7cd1ec2e9a9263849ec34d4dfa8414
2017-05-31Fix doccjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2487 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7be9a5da2a64835ff7558373e7a754647bc5b663
2017-05-31Typocjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2486 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dcc6134d95dea816a3c54a2a796535f384ccfc54
2017-05-31Fix doc and shorten codecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2485 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 97dcd51c0dc9cef00a655e5e0ad078de752eabe8
2017-05-31Merge from trunkcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2482 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5487cc3f399d42f736ec008f40c4082d51e3f683
2017-05-31Fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2481 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3e39324360996e408351421a2185c2cd9e6ee1ae
2017-05-31Fix cpplint and cppcheckvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2480 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9ad6fc7b096fff02a8696515c074ddd92980a8e2
2017-05-30Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2479 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bfadffa81f3cd05c8d4a4c911853ad2f2cd0ac36
2017-05-30Fix doc typovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2476 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: eee441e3902a0995a8356d76007664fe559f3036
2017-05-30Fix spell checker errorsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2475 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94422e6f356532b2db4dc5a55cbb851210b3c36d
2017-05-30Merge gudhi_stat branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2470 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2067fcd13bd6d8549fccf63f1d03fd31bc783cc8
2017-05-30Make install examples mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2467 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 018b6e55c392b37d02503e7822e0a586061c987d
2017-05-29Add 2 new variants of read_persistence_diagram_from_filecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2463 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bd0dd2c981856c8e1a51b2b97ac10d9edd59f694
2017-05-23read_persistence_diagram_from_file now uses an output iteratorcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2455 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3969666dcde3581a75789c5a4b62817dea553f9f
2017-05-19Move src/common/utilities/hypergenerator.cpp in src/common/utilitiesvrouvrea
Management of Python distribution packages make install is now installing utilities and GUDHI python module git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2453 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a85576c7ae062718900f0db2bfb0dd3f26e87177
2017-05-18Modify the way cmake handles utilities, examples, test and benchmarks with ↵vrouvrea
new options to activate/desactivate them. Move hypergenerator as a common utility. Move random point generation from hypergenerator in src/common/include/gudhi/random_point_generators.h git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2442 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e2d13e4b0c09455fb604b684f6d71530352271eb
2017-05-16Add read_persistence_diagram_from_filecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2439 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 026fbb0528343a15a46935ded3aaf13297afeff5
2017-05-16Add MathJax for distributionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2432 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c0f73996dfdfe217ae2dfc2250e7866d680ae1f7
2017-05-16Merged latest trunk changes to Nerve_GICmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2431 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 866ddfadee8160dfaa46b8d703fd8d8d4476892a
2017-05-12git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2413 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a0a65ae49ca0bb6e5ed614f44cabb060fa0e7490
2017-05-09Doc issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2407 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 59aa4cbeef583b93f5e0e4416a4cd2903643d8f0
2017-04-24Doc typovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2375 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 181a2d688b3333b202aa7a25768413259c6c8fbd
2017-04-19Fix doc issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2368 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aa8997eb2c66b9b25206688acc5819f2ded0e985
2017-04-19Rename tests and examples to be consistent with the naming rulesvrouvrea
xml test results is now generated out of source git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2364 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae2dd1592b63f4e7da5e17655761697b6daf7dd0
2017-04-13Answer to Vincent's comments. At the moment I need to discuss how to correct ↵pdlotko
the doc. At the moment make doxygen generate some errors. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2342 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4bb5c3b30bca852045fb414eacf59936975a3855
2017-04-11Move Euclidean_distance in Gudhi namespacevrouvrea
Fix cpplints git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2331 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bc5609c2df490db50e82b56a5e6d899dc6370182
2017-04-07Answers to Marc's commentspdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2317 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f941a6b20210282408d0ef95b84daa973add2513
2017-04-06Answering MG3 comments.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2313 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3bae7a55d05831af55a5b1c3e0d2695383af325f
2017-03-26merge from trunkglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2244 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d261d59dae839dd5de8f6a03c5a167d015f7d85
2017-03-24Workaround for CGAL version 4.8 compilation issuevrouvrea
New target CGAL_WITH_EIGEN3_VERSION set with CGAL_VERSION when CGAL and Eigen3 found to ease CMakeLists.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.8_issue@2241 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2fbf1f9397aa1549ba05aa26ac6852b882dce147
2017-03-24cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2232 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ac02d5dd3b2aedd4795f775c228fe5ef7e1b3320
2017-03-16Merge Last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2192 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 737b10fe34bcc842a1e64522f1eb14c16c7cfec0
2017-03-15Header with correct _config.yml from Jekyll, no more beta web addressvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2187 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2226ee8ee2020d68434027a57babc00da16141ae
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