summaryrefslogtreecommitdiff
path: root/src/cython/cython
AgeCommit message (Collapse)Author
2018-04-20git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/kernels@3385 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2a83e62e132ce406986efa1456b5f1bca6b93691
2018-03-30git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/kernels@3323 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 550a4c3f9050b542203ab53ea7ef5ae1c8032f38
2018-03-29added doc + cythonmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/kernels@3319 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cffc2e28ebf6fae46246c5abaac52b7328adf490
2018-03-06git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/kernels@3269 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 17860628d3250f689152cdf65432c5a61d76f4d2
2018-03-05added files for cythonization of kernelsmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/kernels@3263 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5bc7aadf2696ea2f94384a163451237016a7effb
2017-12-14Merge of branch misc-glissevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3074 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d0842416dbf4ee1ff25a7421841efe8f097e5379
2017-12-01Fix cubical periodic cythonizationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3004 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 664770dcae1726b94d4a486c376d1d2f744371eb
2017-11-30python doc clarificationsglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3001 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9dc859e34125fc163c02a32353879b59fff610a7
2017-11-22Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/set_dimension_mechanism_precision@2931 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 44ca09283b600e6af453eb3507bb4ec92b31948b
2017-11-20assign_filtration bindingvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/set_dimension_mechanism_precision@2918 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 390839c0f172993f6117746d08c5a22c00778c5f
2017-11-20Add upper_bound_dimension and associated documentation for automatic ↵vrouvrea
dimension set. prune_above_filtration cythonization git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/set_dimension_mechanism_precision@2917 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 12af3c5c2d6012c43d80cc95e1ecc8a2c0df340e
2017-11-13User feedback : documentation shall explain the default homology_coeff_field ↵vrouvrea
is set to '11' in Simplex_tree Python bindings. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2870 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3db5b073fce8ca99271d20690e3559c3a0a6557d
2017-09-22Remove global filtration attribute of te simplex tree (including getter and ↵vrouvrea
setter) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_remove_useless_global_filtration@2705 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a6c179ae47e61d1ca12d1f54c4ae1fc0e3c1fde2
2017-08-25bug in Python SimplexTree (needs string)vrouvrea
Doc issue in alpha_complex user doc git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2629 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ab35f6f64af33414002d6899275170f781e9cfa8
2017-08-17Add file formats for Python.vrouvrea
Binding for persistence write files Launch py.test with the command "python -m pytest" (shall work everywhere) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2611 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9443a7eb5b580ece7708ff57949ad08339c1c5c3
2017-08-10Fix Python2 compatibilityvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2607 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b8744511b527f7117d3432c559dcb68b59253e53
2017-08-09Merge last trunk modificationsvrouvrea
persistence file reader Python interface persistence_graphical_tools improvement (max_plots and max_barcodes, and from a persistence file) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2604 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: db80333d4f34151be0c32024af597d90d221a97f
2017-07-10simplex / complex confusionglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2596 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 77c093029d3e2518260ce59705110df3fbfe11e3
2017-07-06Plot functions now returns a plot that can be modified before to be shownvrouvrea
Add confidence band in plot_persistence_diagram Cythonization of read_lower_triangular_matrix_from_csv_file and read_persistence_intervals functions Add Python tests of read functions git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2590 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 522ec31e9ad3a9a688875612d246114704b8c74e
2017-07-04Add Gudhi namespace for reader_utilsvrouvrea
Add confidence band in persistence_graphical_tools.py Persistence_diagram returns a plot that is no more showed. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2582 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4125f4f525057e89c8b0d5d164ea0b9d1df1bd72
2017-04-01remove bad named *_tree() functionsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2300 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 512403fe0838fb2691e0af94c55772bff942b740
2017-03-31Bad choose of exact / approx computationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2293 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ba263cefcc0a76d223e4fba7f21ed96a525d16e
2017-03-31Typo with Perseus-style filevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2291 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d76201ecfd7a1f236a04243fe86ca4eb0c21d8b1
2017-03-31Typo in docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2290 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f71b21674190c3b4c6e472f49680de2ca211cf7c
2017-03-28Use only insert (simplex and subfaces)vrouvrea
Remove useless initialize_filtration git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2276 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: eed1a67e2f83e3a1945cc24b11454ed1ef024ba6
2017-03-28Make Python interface compile, test and doc for Python2 and Python3vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2267 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f7397ecc5aba27ad4ecc794f4fbf5ca857847113
2017-03-22rename get_star functionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2221 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fff57c25d175a6aed355efeb449f94a1af2249b3
2017-03-22Rename plot_persistence_diagram and barcodevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2220 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 66a06ffdc62d5284119df80c3f104a48568cd241
2017-03-22Interface insert_simplex and insert_simplex_and_subfaces in SimplexTreevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2217 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1e426a8cbcba192a50b05b5cc7fa4a0fd50d8c9b
2017-03-21expansion method and its associated testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2215 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32ad429f301b35c064eadef36dbe4e7f64f6490e
2017-03-21Precise when to use set_dimension functionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2212 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9e17d1b5e8a96fffe48e1b1e7b6d766d2abf33e0
2017-03-21Rename get_star_tree with get_starsvrouvrea
Rename Complex_tree typedef with Complex Typo in Rips doc for csv files for distance matrices git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2211 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a6be0ce66ef3c2c71ad43b328cebd673862a76d2
2017-03-20rename get_coface_tree with get_cofacesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2210 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c88576269982d87dd2dfd4003811628fee58dc2e
2017-03-20rename persistence function intervals_in_dim with ↵vrouvrea
persistence_intervals_in_dimension git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2209 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7991f11d249a2051d0cb6e7f453b1d6b7bcb7c36
2017-03-20Rename barcode_persistence and diagram_persistence functionsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2204 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f91e283fa6b6b02198ae28a44f41bd761c1c1f48
2017-03-17Add doc for Witnessvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2199 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b256e90ba831aaa268d42a8a390d89fbc73df10f
2017-03-17Euclidean strong witness complex cytonizationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2195 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: de15e40b8f0efcc59b2f07ffb5f5d59ccab8d51c
2017-03-14Add Windows and CGAL_HEADER_ONLY cythonization supportvrouvrea
Add OFF reader interfaces (required by Euclidean witness complex) Add Euclidean_witness_complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2186 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4d780f05c3409bea47a81e4377dbaf509b9e718c
2017-03-09Strong witness cythonizationvrouvrea
Biblio for doc simplification git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2184 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c191c6b79bb14f799d6cd08ac59a6b007a7874dc
2017-03-08Add witness_complex_from_nearest_landmark_table.pyvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2182 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5e9efcf4c6e50f0864cf473d649dfa26b4ef2cf4
2017-03-08New revision of witness and its documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2181 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5f002c1a58b2daff6c6826a2552d1c101f6810e1
2017-02-22Fix code reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2093 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 91c0d0e66cc12c305dae9e28454a7b9907c1c361
2017-02-22Fix code reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2092 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: df50df0878cdb5ae351b96b4b29e4c95940ae4b8
2017-02-16Do not use args default value set to []vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2082 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 107892dbf3afcf8d46c80f49470e350f57d0090e
2017-02-16Remove pandas examples and use of OFF files interfaces to be more consistent ↵vrouvrea
(pandas interface is not that hard to be done) Add of distance matrix in Rips git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2081 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3a3b24f0824eed2710edb5bf17d120039973bf62
2017-02-03intervals in dimension documentation typovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2057 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 471efb27b0b669a0112b90b44b32e6117bc772d4
2017-02-03Add intervals in dimension function in cubical alsovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2056 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c1fd5ee1283204c7bef96c5f6245e982657dc1cb
2017-02-03Automatic examples documentation page generationvrouvrea
alpha_rips_persistence_bottleneck_distance example for python Add intervals_in_dim function for simplex tree git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2055 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 460fbe5db9f0c08776952106e729a21460bec36f
2017-02-02Change doc html theme.vrouvrea
Change tables git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2047 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aaa29b8f610d506efc3762ad17c4fd768e74d399
2017-01-27Add bottleneck distancevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2019 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1320379f3d41ef4d11326c1aad1dd20469d3f4e0
generated by cgit v1.2.3 (git 2.39.1) at 2024-07-02 10:58:38 +0000