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2018-09-04Use debug or release version to link with python packagevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3871 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: afbd5c833ddc3a525d7091ab186714825109eb87
2018-08-31Link with release third parties library version, even in debug modevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3863 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e33e15081b3029d9dfd4edc464d91b0db47e1754
2018-08-31Works fine in debug and release modevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/windows_cgal_non_header_only_compilation_issue@3857 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2cc11e2a6e7f8eed6c234c17cad7ff04efdbc659
2018-08-31Try with boost release and debug lib versionsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/windows_cgal_non_header_only_compilation_issue@3856 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 130a4319577ef0ec8c10a87c98b7ffcf6f16d808
2018-08-31Pass parameters to cmake function through double quote for unset variables casevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/windows_cgal_non_header_only_compilation_issue@3855 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 57ff4e884e6575cc7938da3937a7a0090567ad74
2018-08-31Add CGAL_LIBRARIESvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/windows_cgal_non_header_only_compilation_issue@3854 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0b8ee8cf61dca1b74481d556615e55caa39246ae
2018-08-31Add debug tracesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/windows_cgal_non_header_only_compilation_issue@3853 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e8792fc3427cb4f4e92f3297aa3f4aea57c54e60
2018-08-31Add debug tracesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/windows_cgal_non_header_only_compilation_issue@3852 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1a99305e1bfab4d86f5a10371dbad3438f3b0580
2018-08-31Add debug tracesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/windows_cgal_non_header_only_compilation_issue@3851 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 00f56b397048aca87422e6da9385b2622acf1094
2018-08-09Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3757 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f7f31a9a2448c7e894aa63b46360f59bc92f54b3
2018-08-09Make soft dependency for matplotlib and numpy dependenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3756 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 13a2e6e3eea8a36d0b9bdb4ab1c34f940a8932dc
2018-08-08Fix issue #4 : [CMake - global] List all that is missingvrouvrea
#21 : [python - global] Additional information on how GUDHI was compiled could help to debug users problems git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3751 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ded8b49b7e282dbf262df5695f2b5285a9907551
2018-08-06Fix issue #14 : [RipsComplex] max_edge_length documented with type 'int'vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3743 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9ef2e20e818fc1c573ce784cd34acb3c6d9970b7
2018-08-06Fix issue #15 : [python - subsampling] sparsify_point_set wrong documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3742 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fcb4ba73cb1c4527a9f772bb9412f5e15c4eafaa
2018-08-02Fix compilation warning that was a bug. Value was not returned.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3726 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5f1b8b40a1e68c655857ccc7b0de7f86a38c63b8
2018-07-02Fix unitary tests after trunk mergevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3658 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 13570cb36f31c353cd8fa58f5b66ac0a00bb0eec
2018-07-02Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3656 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1f02e2f3b3e716d6578be49437e7d0b33fa99e5b
2018-06-14css for https version of the website must be in a valid https locationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3616 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6a85178a0299c744e26b7a98e92c515d9a721039
2018-06-14New website header to facilitate releasesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3614 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aca53e98d8dbfcdde96df5be045acc012ba8608f
2018-06-13Fix cpplintvrouvrea
Merge branch persistence_representation_bug_fix_vincent rev. 3600 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3603 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7e9364e5294b3433eddcebf273924193da3b0742
2018-06-13Rollback these commit (was just for beta version documentation website)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3602 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c0182e445f444bbf1add347dac217322262db033
2018-06-13Fix cppcheck issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3601 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 44cc04b1609d3b3d40382fd02d4fe15e5ba0159f
2018-06-07fix Cubical python documentation (no more simplicial references for periodic)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3555 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 198a65222029760e0ff5cd5e576c3281833b307c
2018-06-06Merge of branch thread_local_optional_vincent to take into account XCode < ↵vrouvrea
v.8 as thread local is not available git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3554 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9dcf072a4606d1131a925bca4571f0f1b5547d14
2018-06-06Doc review : warn about cubical betti numbers function and remove simplicial ↵vrouvrea
references for cubical git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3546 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 41399f9e8aec2ab914368822cd288b1a08839085
2018-06-06Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3544 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 52665a1261ca785f1afe641c483bd65d28045f62
2018-06-06Fix sphinx warning and issues due to new version of sphinxvrouvrea
Modify the doc for persistence diagram git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3543 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3efbc052bce9a11a6b4a758f8229e91eece2a7f4
2018-06-05Add new layout for documentation website for Doxygen (C++) and sphinx (Python)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3539 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2dc9edea317426fad7a7d99d849145845eb75bb9
2018-05-30Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3495 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4033114216c767ad4028e3f6d4ccb5f5dfb88f78
2018-05-30Add install requires matplotlib and numpy in setup.pyvrouvrea
Add Python test fail explanation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3494 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1bac18228a22ea718bb8c77d38efdf84f9b228eb
2018-05-25Fix bug on Cubical reported by user.vrouvrea
Add test on Python level. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3461 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fffa8df624f81427d0feef6ddc3f8a567aa2d366
2018-05-23Legend in the right bottom cornervrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3453 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 221e39777dd55397a0260a2c83f590db610fdb76
2018-05-23Modify documentation for Simplex_tree make_filtration_non_decreasingvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3452 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 304779c7952985d651750aded78cb32c6e583555
2018-05-22Add CMake 3.1 in installation requirements.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3450 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bae61cf108841dae3ff1be5953eb9f87f1713e41
2018-05-15Seems to be fixed.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_v3_vincent@3446 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 01f10ae61484982dc99fd67573d9ca61ffbbec0a
2018-05-15CMake minimal version is now 3.1vrouvrea
Compilation flags are now externalized in cmake/modules Add NO_POLICY_SCOPE for GUDHI_third_parties to fix warnings Try to fix CGAL 4.12 that is no more setting CGAL_LIBRARIES git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_v3_vincent@3445 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0ac7613f016e28cc634606f76e85ecaf5bacb2d4
2018-05-02Add Python Simplex_tree make_filtration_non_decreasing interface and its testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3409 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6a3af66b3d90c6114886e54c5c34287a13f4b863
2018-04-27Remove show_palette_valuesvrouvrea
Add legend flag to display the legend Set rips threshold to 0.3 for users not to be surprised when playing with threshold git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3406 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 03999711eafb81748a82b5725482a9f0d4307861
2018-04-27persistence_graphical_tools documentation clarificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3405 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5b38ba745e20585c35263e2880b8511299e11129
2018-04-27Code and doc review with IFPEN :vrouvrea
plot_*: c'est quoi ce paramètre alpha ? band_boot: Renommer en 'band', sans référence au bootstrap. Ne pas l'utiliser dans la majorité des exemples / tutos. max_plots: mettre une valeur par défaut, pour éviter qu'on se retrouve trop facilement coincé à attendre 1h qu'il affiche des points. Éventuellement afficher un message indiquant que certains points n'ont pas été affichés et comment changer ça. barcode: trier les barres par date de naissance (le faire tout le temps ou avoir une option et le faire par défaut). git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3404 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cfa775e425fbf12da1758d601ccbd80a2c7d3bc9
2018-04-26Fix Copyrightsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/copyright_clarification_vincent@3400 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff348beedf92656c6913c2a1df983b5804b33988
2018-04-25Doc review: Fix identation problems in cover complex reference manualvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3394 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 09d2f6371a73ebb0a93f03a33bc1103f254b0bcf
2018-04-25persistence_pairs Python versionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3393 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5ee633545ca5754b605cdd789ca9720f5936998a
2018-04-24Fix Python tangential complex versionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3392 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f0d9e008229a6cd7868f4afd11eaf3c566e81adf
2018-04-12Add a CMake option in order to use TBB or not. Default is ONvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3375 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fbe41ee9e7771095e34b6c12adbacddf9484f1b1
2018-04-04Merge sparse rips branch in trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3336 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 01dcab006197637ccba9c29f8990375fe05ad7b4
2018-04-03Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@3327 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 85b28237989b93fb4b5f8629a7f28bdb51b9a1b1
2018-04-03Add warnings for rips persistence from correlation matrix (points under the ↵vrouvrea
diagonal). Use range instead of vector in write_persistence_intervals_to_stream git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@3326 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ea0fdc32c91f1927c5a9f2a3864360895ce8128a
2018-03-20Add python unitary tests for cover complexvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3300 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4152cbeaa7dda37e8bb2dd2fc9f115f3976695bb
2018-03-20Finish the documentation and examplesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3299 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d60f4db274962c1c6aaef3c4ab6787bda8c0640f
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