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2020-12-20More flexible Betti curve computations.Gard Spreemann
Introduce a new BettiCurve2 class that can compute Betti curves on any grid (not just np.linspace ones), and can compute the grid needed to capture all values of the Betti curves. Based on feedback from PR #427.
2020-12-19Docstring improvements in RipsComplexUmberto Lupo
- create_simplex_tree method referred to the Delaunay triangulation instead of the flag complex - "rips" was not capitalized - "double" was used in the docs but only "float" (which has double precision) is a Python type
2020-12-14Fix sphinx warning and doc identationROUVREAU Vincent
2020-12-12Merge pull request #436 from VincentRouvreau/ci_without_cgalVincent Rouvreau
Add build and tests wo cgal and eigen and wo cgal
2020-12-11code review: throw an eception if collapse_edges when no Eigen3ROUVREAU Vincent
2020-12-11code review: GUDHI_USE_EIGEN3 generated by CMake in __init__.py as suggested ↵ROUVREAU Vincent
and roll back the other solution
2020-12-10Merge pull request #408 from mglisse/subsampleMarc Glisse
Clean-ups in subsampling
2020-12-09Fix #388ROUVREAU Vincent
2020-12-08Fix #388 for the tests to passROUVREAU Vincent
2020-11-18merge master and resolve conflictsROUVREAU Vincent
2020-11-09Don't test the equality case in sparsify_point_set. sqrt.Marc Glisse
2020-11-07Swap clip with int conversionMarc Glisse
This allows correct handling of infinite values.
2020-11-05More numpy in BettiCurveMarc Glisse
suggested by @raphaeltinarrage
2020-11-03Add comment in code for get_boundaries if not interested in filtration valuesROUVREAU Vincent
2020-11-02Merge master and resolve conflictsROUVREAU Vincent
2020-10-22Document the changeMarc Glisse
It would be possible to emit the duplicate points instead of stopping, but the current implementation makes that inconvenient.
2020-09-28doc review: improve reset_filtration documentationROUVREAU Vincent
2020-09-28code review: Let the exception propagateROUVREAU Vincent
2020-08-25Code review: min_dim = 0 as default and some doc reviewROUVREAU Vincent
2020-08-21Add link to extended persistence notebookROUVREAU Vincent
2020-08-18reset_filtration from a dimension (instead of 'until')ROUVREAU Vincent
2020-08-18Merge master and resolve conflictsROUVREAU Vincent
2020-08-18Merge master & resolve conflictsROUVREAU Vincent
2020-08-12code review: boundaries uses only once find and return a pair of iterator. ↵ROUVREAU Vincent
Exception is raised when not found. tested
2020-08-12Update src/python/gudhi/simplex_tree.pyxVincent Rouvreau
Co-authored-by: Marc Glisse <marc.glisse@inria.fr>
2020-08-04Remove JAX from the documentationMarc Glisse
jax.grad does not work with our functions (I think it used to work...)
2020-08-04fix wasserstein autodiffMathieuCarriere
2020-08-03Merge pull request #368 from VincentRouvreau/matplotlib_latex_desactivationVincent Rouvreau
Add mechanism to deactivate LaTeX matplotlib rendering
2020-08-03code review: no need to test if pointer is NULLROUVREAU Vincent
2020-07-31Rebuild example page and link to example. Add also a link to the ↵ROUVREAU Vincent
publication. Doc review: document edge collapse ignores simplices of higher dimension.
2020-07-31code review: nogil and use ptr as suggestedROUVREAU Vincent
2020-07-30collapse edges for python simplex treeROUVREAU Vincent
2020-07-28Code review: rollback lru_cacheROUVREAU Vincent
2020-07-28Code review: Do not print warnings on import gudhiROUVREAU Vincent
2020-07-28Add mechanism to deactivate LaTeX matplotlib renderingROUVREAU Vincent
2020-07-23Merge pull request #348 from martinroyer/atolVincent Rouvreau
Introduction of ATOL in finite vectorisation method
2020-07-03A proposal for simplex_tree reset_filtration (python & C++)ROUVREAU Vincent
2020-07-03A fix proposal for boudaries of a simplex python versionROUVREAU Vincent
2020-07-03small optimmartinroyer-buntu
2020-07-02Fix #358ROUVREAU Vincent
2020-07-02Merge pull request #355 from VincentRouvreau/alpha_complex_3d_pythonVincent Rouvreau
Alpha complex is using 3d version in dim 3
2020-07-01Merge pull request #349 from tlacombe/fix342Vincent Rouvreau
fix #342
2020-07-01Doc review: add some details about get_pointROUVREAU Vincent
2020-06-29Merge pull request #357 from ↵Vincent Rouvreau
VincentRouvreau/no_latex_for_matplotlib_if_not_available No latex for matplotlib if not available
2020-06-29Merge branch 'master' into fix342Théo Lacombe
2020-06-29update doc in wasserstein.wasserstein to reflect change in default paramtlacombe
2020-06-29update default param for representation.metricstlacombe
2020-06-25cache checkdep_usetex valueROUVREAU Vincent
2020-06-22Merge branch 'master' into alpha_complex_3d_pythonROUVREAU Vincent
2020-06-19Mention the 2 billion limit in the docMarc Glisse
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