Age | Commit message (Collapse) | Author | |
---|---|---|---|
2020-04-22 | Reduce the probability of failure of test_dtm | Marc Glisse | |
It is expected that hnsw sometimes misses one neighbor, which has an impact on the DTM, especially if the number of neighbors considered is low. | |||
2020-04-20 | Merge pull request #265 from mglisse/dtm | Marc Glisse | |
DTM | |||
2020-04-20 | Explicitly pass sort_results=True on some tests | Marc Glisse | |
2020-04-20 | Reintroduce _proj_on_diag, with a unit test | Marc Glisse | |
2020-04-19 | Drop redundant test | Marc Glisse | |
torch.isnan(None) raises an exception anyway | |||
2020-04-17 | Merge remote-tracking branch 'origin/master' into filtration | Marc Glisse | |
2020-04-14 | Check that the gradient is not NaN | Marc Glisse | |
This can easily happen with pytorch, and there is special code to avoid it. | |||
2020-04-14 | Merge remote-tracking branch 'origin/master' into dtm | Marc Glisse | |
2020-04-14 | More testing | Marc Glisse | |
2020-04-13 | enable_autodiff with keops | Marc Glisse | |
This doesn't seem like the best way to handle it, we may want to handle it like a wrapper that gets the indices from knn (whatever backend) and then computes the distances. | |||
2020-04-12 | Parallelize the "precomputed" case of knn | Marc Glisse | |
It is supposed to be possible to compile numpy with openmp, but it looks like it isn't done in any of the usual packages. It may be possible to refactor that code so there is less redundancy. | |||
2020-04-11 | Use longer names | Marc Glisse | |
2020-04-06 | Remove trailing whitespace | Marc Glisse | |
2020-03-31 | merged master | tlacombe | |
2020-03-31 | modified import in test to get consistent with gudhi.wasserstein.barycenter | tlacombe | |
2020-03-30 | Streamline initialize_filtration | Marc Glisse | |
2020-03-30 | Merge pull request #215 from MathieuCarriere/extended_persistence | Marc Glisse | |
Extended persistence | |||
2020-03-28 | Default param of 2 for DTM | Marc Glisse | |
2020-03-28 | Fix test | Marc Glisse | |
2020-03-28 | Fix test | Marc Glisse | |
2020-03-28 | Missing test | Marc Glisse | |
2020-03-27 | doc | Marc Glisse | |
2020-03-27 | Improve coverage | Marc Glisse | |
2020-03-26 | cmake | Marc Glisse | |
2020-03-23 | new fixes | MathieuCarriere | |
2020-03-22 | Merge master and fix conflicts | ROUVREAU Vincent | |
2020-03-19 | new fixes | MathieuCarriere | |
2020-03-17 | fix conflict | MathieuCarriere | |
2020-03-17 | removed _optimal_matching from barycenter as it is now handled by ↵ | tlacombe | |
wasserstein_distance. | |||
2020-03-17 | merging master (including wasserstein distance) into wbary ; modified ↵ | tlacombe | |
CMakeList to solve conflicts | |||
2020-03-17 | Merge pull request #236 from tlacombe/optimal_matching_wasserstein | Marc Glisse | |
optimal matching in Wasserstein distance (pot) (Fix #203) | |||
2020-03-17 | fix test | MathieuCarriere | |
2020-03-17 | fixes | MathieuCarriere | |
2020-03-16 | fix conflict | MathieuCarriere | |
2020-03-16 | Merge pull request #211 from VincentRouvreau/iterator_over_simplex_tree | Vincent Rouvreau | |
Iterator over simplex tree | |||
2020-03-16 | Merge branch 'master' of https://github.com/GUDHI/gudhi-devel into ↵ | MathieuCarriere | |
extended_persistence | |||
2020-03-16 | Merge pull request #214 from takeshimeonerespect/master | Marc Glisse | |
About adding timedelay for feature engineering | |||
2020-03-16 | Add get_simplices method - contrary to get_filtration method, sort is not ↵ | ROUVREAU Vincent | |
performed | |||
2020-03-16 | update doc (indentation, mention of -1 for the diag) and added a few more tests | tlacombe | |
2020-03-11 | clean test_wasserstein from useless np.array | tlacombe | |
2020-03-10 | fix typo in test_wasserstein_distance | tlacombe | |
2020-03-10 | changed output of matching as a (n x 2) array, adapted tests and doc | tlacombe | |
2020-03-05 | Merge branch 'master' into print_warnings_to_stderr | ROUVREAU Vincent | |
2020-03-03 | correction missing arg in test_wasserstein_distance | tlacombe | |
2020-03-03 | update wasserstein distance with pot so that it can return optimal matching now! | tlacombe | |
2020-02-26 | Merge branch 'master' into iterator_over_simplex_tree | ROUVREAU Vincent | |
2020-02-26 | Code review: remove import pytest leftovers | ROUVREAU Vincent | |
2020-02-25 | Update test_time_delay.py | mtakenouchi | |
2020-02-14 | added two more tests for barycenter | tlacombe | |
2020-02-14 | barycenter update, adding more tests and details about log (assigments, ↵ | tlacombe | |
cost, nb iter) |