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2020-12-20More flexible Betti curve computations.Gard Spreemann
Introduce a new BettiCurve2 class that can compute Betti curves on any grid (not just np.linspace ones), and can compute the grid needed to capture all values of the Betti curves. Based on feedback from PR #427.
2020-12-19Docstring improvements in RipsComplexUmberto Lupo
- create_simplex_tree method referred to the Delaunay triangulation instead of the flag complex - "rips" was not capitalized - "double" was used in the docs but only "float" (which has double precision) is a Python type
2020-12-14Fix sphinx error on Azure and AppveyorROUVREAU Vincent
2020-12-14Fix sphinx warning and doc identationROUVREAU Vincent
2020-12-12Merge pull request #436 from VincentRouvreau/ci_without_cgalVincent Rouvreau
Add build and tests wo cgal and eigen and wo cgal
2020-12-11code review: else branchROUVREAU Vincent
2020-12-11code review: throw an eception if collapse_edges when no Eigen3ROUVREAU Vincent
2020-12-11code review: GUDHI_USE_EIGEN3 generated by CMake in __init__.py as suggested ↵ROUVREAU Vincent
and roll back the other solution
2020-12-10Merge pull request #409 from mglisse/fardistMarc Glisse
Pass a distance function instead of a kernel to choose_n_farthest_points
2020-12-10Merge pull request #408 from mglisse/subsampleMarc Glisse
Clean-ups in subsampling
2020-12-10Fix memory leakROUVREAU Vincent
2020-12-09Fix #388ROUVREAU Vincent
2020-12-08Fix #388 for the tests to passROUVREAU Vincent
2020-12-08do not launch test_representation when no potROUVREAU Vincent
2020-12-08rollback test_representation and a CGAL condition to launch itROUVREAU Vincent
2020-12-08Make representations tests work if CGAL and/or POT is not thereROUVREAU Vincent
2020-11-18merge master and resolve conflictsROUVREAU Vincent
2020-11-13Merge pull request #405 from mglisse/botnegMarc Glisse
Bottleneck distance for one point or negative coordinates
2020-11-13Test with negative coordinatesMarc Glisse
2020-11-10Revert change to the exampleMarc Glisse
It would require updating the figure.
2020-11-09Don't test the equality case in sparsify_point_set. sqrt.Marc Glisse
2020-11-09Merge remote-tracking branch 'origin/master' into fardistMarc Glisse
and remove example installation
2020-11-08Test BettiCurve with infinite valueMarc Glisse
+ black reformatting
2020-11-07Swap clip with int conversionMarc Glisse
This allows correct handling of infinite values.
2020-11-05More numpy in BettiCurveMarc Glisse
suggested by @raphaeltinarrage
2020-11-04import matplotlib only when necessary in examples, in function of args. ↵ROUVREAU Vincent
Tests are without matplotlib, so no need to test if present
2020-11-03Add comment in code for get_boundaries if not interested in filtration valuesROUVREAU Vincent
2020-11-02Merge master and resolve conflictsROUVREAU Vincent
2020-10-31s/kernel/distance/ for choose_n_farthest_points argumentMarc Glisse
2020-10-22Document the changeMarc Glisse
It would be possible to emit the duplicate points instead of stopping, but the current implementation makes that inconvenient.
2020-10-17Handle diagrams with a single pointMarc Glisse
2020-10-17Don't put a (useless) point on the diagonal in the exampleMarc Glisse
2020-10-16Merge pull request #396 from VincentRouvreau/tensorflow_wasserstein_testVincent Rouvreau
Added tests for wasserstein distance with tensorflow
2020-10-05code review: move test_wasserstein_distance_grad from ↵ROUVREAU Vincent
test_wasserstein_distance.py to test_wasserstein_with_tensors.py
2020-10-05Merge pull request #363 from VincentRouvreau/stree_reset_filtrationVincent Rouvreau
A proposal for simplex_tree reset_filtration (python & C++)
2020-09-29Added tests for wasserstein distance with tensorflowROUVREAU Vincent
2020-09-28doc review: improve reset_filtration documentationROUVREAU Vincent
2020-09-28code review: Let the exception propagateROUVREAU Vincent
2020-09-08CMake > 3.5 to use Boost targets. Compile only what is available from boost ↵ROUVREAU Vincent
targets
2020-08-25Merge pull request #382 from yuichi-ike/weighted_ripsVincent Rouvreau
Documents for weighted Rips
2020-08-25Code review: min_dim = 0 as default and some doc reviewROUVREAU Vincent
2020-08-24code review: call boundary_simplex_range only onceROUVREAU Vincent
2020-08-21Add link to cubical notebookROUVREAU Vincent
2020-08-21Add barycenter notebook linkROUVREAU Vincent
2020-08-21Add link to extended persistence notebookROUVREAU Vincent
2020-08-21Move examples and link to notebookROUVREAU Vincent
2020-08-21Add -DCMAKE_BUILD_TYPE=Release on installation docROUVREAU Vincent
2020-08-19docs modifiedyuichi-ike
2020-08-18reset_filtration from a dimension (instead of 'until')ROUVREAU Vincent
2020-08-18Merge master and resolve conflictsROUVREAU Vincent
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