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2020-03-16changed doc of matchings for a more explicit (and hopefully sphinx-valid) ↵tlacombe
version
2020-03-13Merge remote-tracking branch 'upstream/master' into optimal_matching_wassersteinMarc Glisse
2020-03-11clean test_wasserstein from useless np.arraytlacombe
2020-03-10fix indentation in wassersteintlacombe
2020-03-10Update src/python/gudhi/wasserstein.pyThéo Lacombe
Co-Authored-By: Marc Glisse <marc.glisse@inria.fr>
2020-03-10fix typo in test_wasserstein_distancetlacombe
2020-03-10correction of typo in the doctlacombe
2020-03-10changed output of matching as a (n x 2) array, adapted tests and doctlacombe
2020-03-10removed _clean_match and changed matching format, it is now a (n x 2) numpy ↵tlacombe
array
2020-03-10removed P[P < 0.5] thresholding ; as it shouldn't happen anymore.tlacombe
2020-03-10Merge pull request #227 from tlacombe/improving_plot_rendering_pythonVincent Rouvreau
Global improvement of rendering with Python tools and fix #27
2020-03-09removed infty line plot in plot_diagram if no pts at inftytlacombe
2020-03-06set greyblock to False by default in densitytlacombe
2020-03-05completed as...tlacombe
2020-03-05updated doctlacombe
2020-03-05Update src/python/gudhi/persistence_graphical_tools.pyThéo Lacombe
Co-Authored-By: Vincent Rouvreau <10407034+VincentRouvreau@users.noreply.github.com>
2020-03-05Remove travis and use appveyor for OSx. Fix parallel test by setting tests ↵ROUVREAU Vincent
dependencies
2020-03-03updated doc and example handling Nx2 numpy arraystlacombe
2020-03-03handle numpy array, should now adapt the doctlacombe
2020-03-03correction missing arg in test_wasserstein_distancetlacombe
2020-03-03update wasserstein distance with pot so that it can return optimal matching now!tlacombe
2020-02-26Fix #229 incomplete citation in nerve_GIC python documentationROUVREAU Vincent
2020-02-25say in doc that functions return axtlacombe
2020-02-25solved scale issue and removed title/aspect as functions return axtlacombe
2020-02-25Revert "Global improvement of rendering with Python tools"tlacombe
This reverts commit 34e1ae726e27fdd7c41f6d80d8ed7f6504dc3a0d.
2020-02-14Global improvement of rendering with Python toolstlacombe
2020-02-12Merge pull request #182 from mglisse/extMarc Glisse
Interface to hera's Wasserstein distance
2020-02-11License and authorMarc Glisse
2020-02-10Use setuptools.find_packagesMarc Glisse
2020-02-08Euclidean with a capital EMarc Glisse
2020-02-07Name argumentMarc Glisse
Co-Authored-By: Théo Lacombe <lacombe1993@gmail.com>
2020-02-07More uniform notations between the 2 wassersteinsMarc Glisse
2020-02-07Bad link for last versionROUVREAU Vincent
2020-02-06pytest.approxMarc Glisse
2020-02-06use bibtexMarc Glisse
2020-02-06Make pybind11 mandatory and simplifyMarc Glisse
The use of install_requires and setup_requires looks strange, I would expect cython in setup_requires, not install_requires. But setup_requires doesn't seem to work so well anyway.
2020-02-06Print pybind11 version, protect testMarc Glisse
2020-02-05Add gudhi.representations in setup.py packagesROUVREAU Vincent
2020-02-03Contradictory requirements for CGALMarc Glisse
2020-01-30Document dependency on pybind11Marc Glisse
2020-01-30Allow use of preinstalled HeraMarc Glisse
2020-01-27Merge pull request #189 from mglisse/docVincent Rouvreau
Link the doc for subsampling & point file readers, some reorg
2020-01-20Share tests for wasserstein_distanceMarc Glisse
2020-01-20Merge remote-tracking branch 'origin/master' into extMarc Glisse
2020-01-20Simplify the pybind11 codeMarc Glisse
2020-01-20Adapt testsMarc Glisse
It is still failing by default, until I touch alpha_complex.pyx and rebuild it, after which it works ?!
2020-01-20Sprinkle some "except +" in cython filesMarc Glisse
2020-01-18Separate optional arguments from common argumentsMarc Glisse
I copy-pasted what is done in RipsComplex. Before that, sphinx was grouping nb_points with off_file, as if it couldn't be used with points.
2020-01-18Merge remote-tracking branch 'origin/master' into docMarc Glisse
2020-01-15In python2, does not work. is ok for Python 2 and 3ROUVREAU Vincent
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