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2016-10-04Mention farthest search option everywherecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1621 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 098ada4430780a45eb01a2b25be275752370a08e
2016-10-04kns, kfs... => knn, kfn...cjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1620 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4965c110b94a8ff1e919464a1f55ec3e62fd8bbf
2016-10-04Recommend the user to read CGAL doccjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1619 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a4c42c45551039c634b60cc9fa21b12bb4c907ba
2016-10-04Modify the example to avoid misleading the usercjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1618 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa4a318f59e6d6dea46694bd71d0a6a2baf1aaff
2016-10-04Changed the second choose_n_farthest_points' incostistenciesskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1614 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 285b607d598b0f50efd6d4f1f3d4e38dfc2d097a
2016-09-28Unused typedefcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1584 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1b8fa44e98da75619a411c1d6058ccebff9ac350
2016-09-22Fix typocjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1542 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b09cd3fd1ea7940d8787b0d9cd23d4d7e69d0925
2016-09-22Clean-up CMakeLists.txtcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1541 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3204fef66b8a8358820531f8d6d2494c96a7226e
2016-09-22Spatial_tree_data_structure => Kd_tree_searchcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1538 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 095b038d0e4c1c6d78e9aa9efe73447b65dab2b1
2016-09-22Require CGAL 4.8.1 (furthest neighbor is bugged before)cjamin
See https://github.com/CGAL/cgal/pull/1105 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1536 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc980f30c107b39f8a47e18deb23820b411a9201
2016-09-22Require CGAL 4.8.1 (furthest neighbor is bugged before)cjamin
See https://github.com/CGAL/cgal/pull/1105 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1535 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: da97775398bd24c7c1bd431686abd66cdf24005b
2016-09-21Add packages in GUDHI_MODULEScjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1522 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa1d4b4f1e0f6c437817e7bf6453d9fb1ca09df6
2016-09-21Merge from trunkcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1520 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 477d84d9b29057de29afbb77d830d9d46a8f54be
2016-09-20Fix CMakeListscjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1519 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a4a5956802d6c22370367180a2ab70aaff3d3cf9
2016-09-20Use boost::iterator_property_map instead of the pointer trickcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1518 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c1a1fc717ef32087617cff6f8bfa73836365b481
2016-09-20Changed the name of farthest point in intro docskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1517 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 83ad658d6fa02e8a1524bf0f363c8bac522c9406
2016-09-20Renamed pick_random_points -> pick_n_random_pointsskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1516 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 45cc8cca9debf56dd0d21762e537649dd92d9a4d
2016-09-20Changed the names of files as wellskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1514 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: df3b82dc1d07b5d51b1c1bed4b5abd823129d4a8
2016-09-20Changed choose_by_farthest_point -> choose_n_farthest_pointsskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1513 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 287ef6f3be6e4db4616ad92ff7369cd7722a1f2d
2016-09-19Merge of warning_fix branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1512 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8fd75ab3cb6a02013df18f6d5048755d39524b70
2016-09-19use of std::vector for unitary test instead of CGAL points typevrouvrea
rename unitary test as stands in convention git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1511 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b768b5a6bb0fe823abe6cbbea28d49c7ecb39a9d
2016-09-19Rename off file reader as stands in convention.vrouvrea
Add an example with a vector of double for point type. Fix SO3 OFF files accordingly to OFF file standard. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1510 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff61bed1f1895bc5bf1af4ae946e2a84a692c390
2016-09-19Don't know why this test fails on win64 : assertion failed vector iterator ↵vrouvrea
not incrementable Workaround git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1509 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4e29928ca7198b9c98aee8d961900910d51cd5f3
2016-09-16No more need of Test.hvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1508 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a0436136ab366116b61d0630a3da2b6407291db9
2016-09-16Rename tests according to conventions.vrouvrea
Add xml UT generation for the Boost tests git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1507 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 17a39f49058182586307f13511f78201ef2615dd
2016-09-16Rewrite tests wit BOOST testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1506 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5afe034e18381c4921987457fd75f15c21b3aed1
2016-09-15remove concept dir for Contraction (empty)vrouvrea
remove unused using namespace git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1505 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32785bb7a8062d828069f22b0d410afa3e57f702
2016-09-15fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1504 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b0036e77dafec3301dd9f130265e1513a82cddf4
2016-09-15Fix cpplint warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1503 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b4e1ec1b6cc95a6a7207e68fb31e064c0e3bd065
2016-09-15Fix cpplint and warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1502 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: afc7d137b66225954ebfe37a823f1f0b6bcfe7a5
2016-09-14Fix construction of pointscjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1496 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 19a074947a803f359af2be2026d9c4135743fb49
2016-09-14-Wsign-compare is included into -Wallvrouvrea
-pedantic is recognized by icpc (and also gcc and clang) unlike -Wpedantic git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1494 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6ad63e46a4e077bc4e16852eb0cb443db7c5197d
2016-09-12Gudhi 1.3.1 in Doxyfilevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1490 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f5a84ac81c1bac977c8bbf4551e0ab626b64fece
2016-09-12Intro_simplex_tree.h for filtered complexes module documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1488 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b9dfa3d056b4216efe02c8cb0323bdd8805b2756
2016-09-12Modify filtered complexes sections and examples.vrouvrea
Modify persistence sections and examples git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1487 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6b0bdc7199f7229ac152175c4cbc6ebd79c9bc67
2016-09-09isnan must be preceeded by std::vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1486 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94adb015da0957f3b4ce3f5742f9cb0cf57b6284
2016-09-09Add a comment for assert that explains null_key mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1484 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 12246383db2c71ce36d03e5702180605459e6fe3
2016-09-09Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1483 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1eafe2e93f1fc3a2780d9452aae1981481786f95
2016-09-09merge make_user_version branchvrouvrea
Commit of new doxygen header with "They are talking about us" section. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1482 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 44a65247177c6f2c72bbbebd88042aa036c26bb2
2016-09-08Add doxygen target for user and developper version.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/make_user_version@1481 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b76661a6d3e91508ffa21f1e183a5e822f6a92bf
2016-09-08Make directory fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/make_user_version@1480 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8515623b6556f183d849ea1ec6e667d23afeff2
2016-09-07Add GUDHI user_version target to replace generate_version.shvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/make_user_version@1479 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b41a86ec3bed234b8fa1988b48de058ab501c392
2016-09-02Fix doccjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1476 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5b3c3b464629ce121429374865144789d30febc6
2016-09-02Test incremental functions + compare results between fixed and incrementalcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1475 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4e0136ebdb774dffe7d0840bd1544e1dbc991336
2016-09-02Make member variables private instead of protectedcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1474 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 31aa6d4fcb13c1700fc081064135ebf449203464
2016-09-02Remove commented functionscjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1473 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 046de1927ed4acf0273df72744607f3bd3300a40
2016-09-02Mark comment #1 + Vincent comment #1skachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1472 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e9a2fb8d8f9e11c60326203c7e0e46cdb2b12435
2016-09-01Document Kernel and Point typescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1470 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ce852f241ab92d40b6f32e70aa85d8cb8515b394
2016-09-01Fix sentencecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1469 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d66e96bd7638ec76b9136b84695691af4c6a5691
2016-08-30Fix function namecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1462 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f11c5f25649eae2e85dffe02d78675ff4bc3db8c
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