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2018-02-16Add Cech complex. Do not compile yet.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3250 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bef87ed8038444685b964175ea65860300917380
2018-02-14Fix copyright issues for Simplex treevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3248 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d13758f0059174863de260efac88b32aef256753
2018-02-02Fix after version release of Cover complex and Persistence representation ↵vrouvrea
installations Fix utils download link git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3211 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9596df8b0d0cdc3d8df79aa367a26b34a96d7f5e
2018-01-31Modify header (cpp and python) to fit with the new website sectionsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3192 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1dc2f0745020db4a27649c55dc1d01397b0a403c
2018-01-31For official GUDHI versionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3190 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f3790f950fc43c2909e9ff88b19753a622b506cc
2018-01-30Fix after web reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3189 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fd42bab9b27a3c086adeaf75068c83a911ede000
2018-01-30Copy test files in build directory for not to pollute sourcesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3185 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4926f0a4e3c02ce77bdbf5847d421b6152a24a65
2018-01-30Fix --v to -v for Cover complexvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3182 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 46e36af1a3e9aae8f1b12d2ee7fc749eb531f505
2018-01-29Ignore md files for Doxygenvrouvrea
Fix relative path issue git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3179 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c8f88a757fdf681327f1cef9feadf7bf8d12da83
2018-01-29Code review : with C++11 fstream constructor from std::string is availablevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3178 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 31485d70d2d4a475b70d0c07859084b36139b56f
2018-01-29Rename README files for web site generation conformityvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3177 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 632b264790c30accb42e731c4a4f6744a2f7ba11
2018-01-29Fix doc issue for utilities part on the web sitevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3176 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3bafd9e13a5646ca93023144705d3ac7ed7c9b3a
2018-01-29Using std::string instead of char array for file names (overflow detected by ↵vrouvrea
fortify) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3171 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b590989d278e00aec79d6a7bc2b72088b5cb0e57
2018-01-26Add doc Copyright for Python partvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3168 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fccabadc27b805caecaab99517df80fab1113d73
2018-01-26Move documentation Copyright in footervrouvrea
Removed from each module git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3167 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7595f2d18cdc3773bbd96fa9fed414876ff9fdc7
2018-01-26Seperate installation and examples from main pagevrouvrea
Move cover complex utilities from examples GIC.cpp example was not compiled, nor tested. It is removed. Persistence representation : no need to link with Boost_SYSTEM git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3164 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cf2bfa6c6de2ed359aaa165b9f80bca7e06defb1
2018-01-25Small changes suggested by Marcmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3157 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 011f3638ca7b0c51cdd0d0983bb9e2f6fd256ad9
2018-01-25Code review : fix camel case for types and use of std::log instead of logvrouvrea
Add CGAL dependency for Nerve_GIC (link to bottleneck) Add persistence representation in bibtex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3155 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8a45497b3d1f34a5c4a1c7856113c6b7680a12a2
2018-01-22Fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3149 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e1cc797f8c24015168a1f84430666e8a156ababa
2018-01-22Fix some cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3148 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 34a01d0b7d9b59e72fd14e7616a09dde50e1dbd1
2018-01-22Merge branch Nerve_GIC - using boost Dijkstra instead of Simplex treevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3147 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 82ab3eca5c907cbbb716a7ef47cc84b0a0d1000d
2018-01-17Fix Qt5 issue for condavrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3142 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fba226ce40c3b20cd53bc1c4a199d309180faa1f
2018-01-16Merge of branch misc-glissevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3135 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7b678c4b6accf796920ca9582fa57e13f5f1f8cb
2018-01-08Fix std::max Windows issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3120 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9aad5e17fb5b93b9b9054ce093dd54a56ca4b08a
2018-01-08Add include <iterator> for std::distancevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3119 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 92438c70043c4ee0d200b8906400b059d176196f
2018-01-08clang-format filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3118 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c8371fc65da4f9912b602a4f3a6701661e46580e
2018-01-08Merge of branch persistence_representation_integration_cmake_improvementvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3117 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 673143bd16e06d990aeb104a506cfd71f91a8717
2018-01-08Merge of persistence_representations_fix_reading branch + clang format filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3116 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0bae116ddc294d46e347d61fecc6e76b1e13f053
2018-01-07reading ug fixed. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representations_fix_reading@3114 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b1476d1db101bc4c7377d9e5e34445ee6cd7cf9a
2018-01-03git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3112 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0e3300cbc4d9c1375a7a162d175a982c3145c42b
2017-12-22Prettify find_simplex().glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3105 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 34ce3d49fb8f9e64df8b492b2e9091e5e0ca6be4
2017-12-22Use contiguous_vertices in find_simplex().glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3104 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b8d7996b0c3a020d1b67003e4250e557c3cebee9
2017-12-22Cleanups in Euclidean_distance.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3102 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 06a14b11149e9c7265b8a3427404a9a0991d51aa
2017-12-22Comment pointing out where we use null_vertex.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3101 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b6fa96bd51ef95767c10310262951339f7971442
2017-12-22Check that user does not try to insert null_vertex in the complex.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3100 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b44cf48f810de029f3bd8c3a18cc8a9959c34bff
2017-12-22git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3099 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa1505962b7b6140611935cd960edcdb0c48dd5c
2017-12-22cleaned the codemcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3096 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0a24fb8ff0300dc06c48fdb163d053387ae21c29
2017-12-21Code review fix : Bad cmake utility name, file read check, non negative ↵vrouvrea
weight check git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3095 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 09c0342e7c06f69b62f01c3ba8330a99b963399c
2017-12-21git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3094 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 277086858a1634a27fc271f18b3d85f2b669f9bd
2017-12-20Merge 1_fold_cover_periodic_alpha_complexes branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3093 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 16709f47787220b4bb4a96936b211c932b03102d
2017-12-20added extended persistencemcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3092 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a20ecf24407ce88654ad01257d8e44f8395c6b62
2017-12-19removed namespace boost and stdmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3091 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a1c367d57f6d2874c4008e08be68a39d6f821706
2017-12-19Boost minimal version is 1.48.0 (modification rollback) - if boost_version ↵vrouvrea
use static_vector (from Boost 1.54.0) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3090 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 487d902c645793f2647191a0d8f9218184fa19de
2017-12-19Fix unitary testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_cmake_improvement@3088 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: db6f2e909552d643597925b312b7b50743924dfa
2017-12-19git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3087 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0d5e8163d4ea01c9a34ec6b6c6d4bd4fbedffb68
2017-12-19Fix test units vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_cmake_improvement@3086 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2d4ea393eb3d17ee7b60efc0f6c4c0531f21d451
2017-12-19changed data structure to use boost graphsmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3085 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 614b6362ceeb8237c224d12b523677dcbc82fba8
2017-12-19Fix testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_cmake_improvement@3084 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4fb56062184eeb07cbc7aa0c76803bb08daa0453
2017-12-19Add a function for unitary tests to test floating point values equality w/wo ↵vrouvrea
epsilon values git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_cmake_improvement@3083 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 835037fd6efea4fbfc9a494df3015186232388bf
2017-12-18Merge of ST-insert branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3082 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: efc5affb65a1c41d7d86247269cb3eef5e3e792c
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