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2017-03-06Merge last trunk modifsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/botteleneck-parallel-sort@2162 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 98dd1d8c194e58fa7d565a3b83276ae1a56a9769
2017-03-04Missing includes and const for Euclidean_distance.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2158 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9f2243ec5c2a50b271031b6b8c8148afeb0bc1df
2017-03-03Merge last trunk modificatinosvrouvrea
make sphinx depends on cython target git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2155 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ebb1709872963ffd30a6d31ab596f2715ca14436
2017-03-03Add GPL copyrights on images directoriesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2142 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d6bdcfdefb00263199b22fcc39cdb8826f8f3dbe
2017-03-03Link with TBBcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/botteleneck-parallel-sort@2141 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 80325216eace3cb1dbadbde3f4e5a3985b8feab0
2017-03-03Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2140 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7213c9eb7d01812a5dcf0133ca29cfdca6121519
2017-03-02Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2137 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6d1f49e945104d3b668139520d19d2ea8d4dc4c7
2017-03-02Move variable definition in if statementvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2136 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cb72284bc8962d4d5ec89c8a6d7f10ec559a4d52
2017-03-02Add boost system for everybody because same link error on Win64vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2135 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8e6f53228d81b3b78eedf35a1a74e9f43fe2382a
2017-03-02Use parallel_sort to sort distancescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/botteleneck-parallel-sort@2134 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b3a43683ab1d452845138605488a845a4b694432
2017-03-02Add gudhi patches to user_versionvrouvrea
CMake code factorisation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2133 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: eaf54902bad1a9e2609828f4325b6c465181f553
2017-03-02test if !end before accessing operatorvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2130 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 82e8b58b1452f45668bd7511d528db96c3613c53
2017-03-02Add Boost system libraries for examples using persistencevrouvrea
Remove useless includes in example_nearest_landmark_table.cpp Fix list iterator not dereferencable on example nearest_landmark_table git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2126 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c93f00a0892737e1324a3ee8378ef7d49e6517d4
2017-03-02Try a fix for Windows Boost compilation link errorvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2125 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: abcd5956dc410b8dfd587cfcd0f181def6c34371
2017-03-01Remove Debian directory.glisse
It will be handled separately in Debian. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2124 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e1b94bc17059f1bbaa88c1117e044d205efb5582
2017-03-01Only Euclidean version of Witness requires CGAL and Eigen3vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2123 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ca4c8174eb5dc4787113659f5289104af2515bcd
2017-03-01Fix cppcheckvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2122 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 92d11c064056138ce4aa8cbe3a42df29a8a5ca7d
2017-02-28Move boost flags for MSVC compilation issue (already moved on rev. 2115)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2121 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1f2f185fbfbbd56ef9fb5a96b2d75a65db4c850e
2017-02-28Fix cppcheckvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2120 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 49a5c2c6e94d9fbf235eecc92fa30e62980c7c70
2017-02-28csv file and not OFFvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2119 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e4cd541c47a9061019a3a04f47849e8c77df418a
2017-02-28Fix cppcheckvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2118 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5783a6de4bdb1fac8362f5badee204b37015da1d
2017-02-28Fix cppcheckvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2117 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc572de6a1ee5bdc6f25b02ad26d88a4a453440a
2017-02-28Fix CppCheckvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2116 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 39094c55b9ccb3f09e344a6eff474c3373b13292
2017-02-28Move -DBOOST_ALL_DYN_LINK from persistence to global CMakeLists.txt (also ↵vrouvrea
required by witness) Add CGAL and Eigen3 required by Witness in main page Add examples to be tested for Witness git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2115 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 33fbdf3e970c35635ae2738c1ace801f077ec750
2017-02-27Add TBB compilation support and documentationvrouvrea
Add Matplotlib results in GUDHI persistence graphical tools git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2112 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e9fe1111d3a7d82c004a390cee77197221f117ec
2017-02-27Alpha complex requires CGAL 4.7 (not 4.8)vrouvrea
Add CMake configuration to cythonize with TBB when found git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2110 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8341a46af52d74f17e5b1fcbb609f5a2d1da52af
2017-02-24Modifications for MacOSX compilationvrouvrea
Add GUDHI web site eader and nice colors for the python doc git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2109 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 20923bc3f304cfe96aec58030920c043400c3dd4
2017-02-24Revert previous commit, was supposed to go to a branch !!!glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2106 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 59183c46120a19ad0a840dd57b7a4706a4d44bdd
2017-02-24Let choose_n_farthest_points output distances (optional).glisse
Drop unused CGAL includes. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2105 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c5a34492a451c8455c42eb8db1c6c7ca5f1bc7b2
2017-02-24Removed all_faces_in includeskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2101 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d56b8c508be289dc84fe58c381596f4da45d0a2
2017-02-23Added the copiable precision to the doc.skachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2100 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1892ed7c04219bee7e3dbf408d49d153d85fe10b
2017-02-23Precisions in the simplicial complex conceptskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2099 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a58b657d4e3793016b01844d9da2dd9553a613e3
2017-02-23Changed default limit_dim in Strongskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2098 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aa467ec1ae98bc6a7131cc7daf9348e695086a7c
2017-02-23Doc review fix (sphinx typo)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2097 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e9e35a69ce1286a040348b2a49cd6093342b17fc
2017-02-22Doc fixskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2096 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a93d997f6d2fdef9a8e9dfad9720af5dae998828
2017-02-22Marc's review:1skachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2095 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8a4f9c28d3d279f799b8706366559e2a39d11560
2017-02-22Merged with trunk + minor changesskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2094 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6b23778cbe43e7697cd325039e843758a263d927
2017-02-22Fix code reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2093 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 91c0d0e66cc12c305dae9e28454a7b9907c1c361
2017-02-22Fix code reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2092 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: df50df0878cdb5ae351b96b4b29e4c95940ae4b8
2017-02-22Code review fix (it was not the correct alpa complex example for persistence)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2091 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 990c071fc32bc88ba7bff1a1a1f4957e8923a0c6
2017-02-22Code review fix (revision numbers for python version)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2090 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4a0ed2167cc2efdb5a08f91866ee071daa062b61
2017-02-22Fix code review (we are building Cython and not demos)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2089 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cfa8fb387b808ab846d61b974703988121507080
2017-02-20Hugely improved the complexity of the weak witness complex.skachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2086 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 93fb1d9d1b52ce17b913db080b2ec0692056f87b
2017-02-16Do not use args default value set to []vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2082 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 107892dbf3afcf8d46c80f49470e350f57d0090e
2017-02-16Remove pandas examples and use of OFF files interfaces to be more consistent ↵vrouvrea
(pandas interface is not that hard to be done) Add of distance matrix in Rips git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2081 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3a3b24f0824eed2710edb5bf17d120039973bf62
2017-02-13Removed another dead lineskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2074 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 350daacf747a3e34b4ad0d6c132ef0a91ccc23c6
2017-02-13Removed a useless comment and a dead lineskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2073 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cf13ae95d2757e5d274679107c0b40c185cf47c9
2017-02-13Hid the Active_witness classes from docskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2068 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e37c1486076cf5a1699c643ac71db22934944eca
2017-02-03Modification for GUDHI version 2.0.0vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2060 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4b91c810b51851f5ef98b09dd58ce0359003390d
2017-02-03Modification for web site reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2059 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6b4e7613a8cef0005ce452d6d778c604ec728090
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