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2016-08-05Modify plain_homology to show a Simplex_key type modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1418 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9d9c99b8d8acd8a6fdbfe09601ffe6826ca04857
2016-08-04Make GUDHI Cmake less verbose on CGAL package findingvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1415 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2eebce43b0f75ab1cef3a2fe6f2c1bd0b38672a9
2016-07-23read filesfgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1393 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d7f1b1166b65f7d7abc007abb47d86f8d4ba4157
2016-07-01Eigen3 find_package factorizationvrouvrea
CGAL find package in root CMakeLists.txt for Witness complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/eigen3_cmake_factorization@1377 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32137f7687837c63ecfab3a2d11114b27873a1f2
2016-07-01Merge of fix_naming branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1373 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cdd9722e1d58fca13de0f9a9cf0404eb3a22d98d
2016-06-24Bug fix in Gudhi 1.3.0 documentation - Alpha_complex_from_off.cpp and ↵vrouvrea
Alpha_complex_from_points.cpp requires CGAL >= 4.7 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1346 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e6f0966710d6b07f629490d4b6068d087777488f
2016-06-16Merge FindTBB patch for cmake.vrouvrea
GMP and GMPXX are required only for multi field persistence. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1307 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 56a66e166a07b9eb22ec0d8d05ec66bb5162da5b
2016-06-16Try with 1307 points on a torevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1306 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 82c15cf0810c287c1d8728c13e7fcc1e75f98af6
2016-06-16Make a simplier test for Contraction as it is too long under Windowsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1305 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8269c97d1be121be164afe0c8720863541b5799e
2016-06-16Remove GMP and GMPXX required for all persistence examples. Only for ↵vrouvrea
Multi-field. Update doc. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1303 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5ade88a9525f04ac45e2ddd65881da1771954ef6
2016-06-16gmpxx is required only for Multi-field persistence examplesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1302 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 567bf69e3efba23f065d296c2b3d69578c377be3
2016-06-16Fix find TBB package for msvc 2015vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1301 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a76105ff52729d8170eb88f5a5cbbce06b65b0ad
2016-06-16Fix after code reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1299 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2c58cbcd94f72930f8516121f47cace95a84511c
2016-06-14data points generator to follow convention namingvrouvrea
Alpha_complex instead of Alpha_shape git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1278 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 680d599dce4b87a570083ac16c6574166d7af47d
2016-06-10Rename namespaces according to conventioncjamin
+ Missing Boost_THREAD_LIBRARY + Useless typename + Use TBB_LIBRARIES git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1274 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5c02ec481b62ef52b40d849e76e3d333e2ca4e7c
2016-06-10Useless typenamecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1271 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dcc10421c0e2ce26abbfa93176c62d6c834bb5d3
2016-06-10Use TBB_LIBRARIES instead of TBB_RELEASE_LIBRARY + missing boost dependencycjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1269 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d39ecf562678c53f960467e7cb14eeaff4b938c4
2016-06-08periodic_alpha_complex_3d_persistence modification for is_cuboid_3 to be ↵vrouvrea
customized through a file. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1261 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9862a35dcdfc0dbf0eff01375ea716f094833127
2016-06-07Rename projects in CMakeLists.txtcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1257 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a51e43d795b0c246d0949c7566aa57d3e15925c7
2016-06-06kd_tree modified addedfgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1250 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 07254aea5d1921f8bb43f73ac1fe9d76b63c5c3e
2016-06-06kd_tree modified addedfgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1249 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c2c617e0f808bb2c51042174c5d2b4bbdd3998c9
2016-06-03conceptfgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1247 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7bfce006ccae0784f3e0f3747f670eddaa9aba48
2016-06-03CGAL+ VERSIONfgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1246 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b9bde0a97e56042b84d1850dea34e559dc196b91
2016-06-03compilefgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1245 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a26ddc43a1f71052b594d5e0d65d28d952a0917e
2016-06-02CMake fix after executable renamingvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1244 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5238ff5ecdc70b6e97539625b687ac0626c49ef2
2016-06-02listsfgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1242 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 134d7d5c1f940ac342eb1721de6ee9cb41f1102b
2016-06-02old name removedfgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1241 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 66627d6e4e4d292717d8991351a7d31062b734a8
2016-06-02renamingfgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1240 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 53bcbf20e176a21dc41ef3c4d4295b1e9aa959b0
2016-05-31worksfgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1227 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6b7d024adef25ef52ac48a2a0ead692be798a708
2016-05-30Missing documentation for parameters.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1220 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 190cfccdca4d4fd15066ad04885d5dc19428d59c
2016-05-30cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1219 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 81a6208f769c5237d4f81bc97fc1f3d581e733be
2016-05-26Add doc, examples and unitary testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1213 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dc7980ef3f1baef17f2e42770da146d6c961e672
2016-05-26détailsfgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1209 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 68dcb3d217126ee638284d9b3951d1fa20be5904
2016-05-26détailsfgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1208 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 360093cd6a67d08b98682362ec80271fb82dc2b2
2016-05-26Betti number fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1207 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5dacf1565eee2fe83781b0bdfb05898ffa36fe66
2016-05-26include <..>fgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1206 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4f3e5c3b334b854cb81a8945f27874babd874e98
2016-05-25Missing include_directoriescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1203 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f75268759affc6ce3e7c5a2929ba00971a1c48a1
2016-05-25savefgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1199 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 00868265725afaf47ed8292c0d6f7cff235a016f
2016-05-24save 24/05/2016fgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1191 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 046c7bccbd04ebc20ce3970a60b880a696a31266
2016-05-24get_persistence and Betti numbersvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1190 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6da18e680111a9a1ad7753779a94a1e8ce49702c
2016-05-23savefgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1187 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5f7f7b5f900f8123daeaeff90beb1fbd676334ac
2016-05-23savefgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1186 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9fa716e4f240d0f829527666f19330c7c63f6c30
2016-05-23savefgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1185 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4be2335267f7ad5253cde7f0573199013034c00e
2016-05-19Seperate doc from code in Persistent_cohomology module.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1184 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 90b406b11cfa6356243bb4e881c8c7db06f14d6e
2016-05-10Clock.h requires Boost.Date_timecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1159 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 536869c84e7ced010376bc7c8a7d9608764e7247
2016-05-10Missing "include(${TBB_USE_FILE})"cjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1158 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 61e131f64d4abcf238c24da563fe58703e450346
2016-04-16Less CRLF line endings.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1135 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 83328005a983668b00961f069672e97493e42a34
2016-04-16Minor tweaks to alpha-complexglisse
* use the dimension of the kernel for the TDS * recycle a vector git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1134 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 590f625287629dd041afd5ce479c99b48a476b64
2016-04-15rename parallel_rips_persistence in rips_persistence_via_boundary_matrixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1129 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5c8b71aeb701a181381bf8d628ed65f1d7e214df
2016-04-15Merge of periodic_alpha_complex_3d_persistence fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1128 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 90dabd086a0c5be05ac4eea9b4b58729288b1315
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