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2017-03-22Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2224 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 822ae367f4384a181f96498dfb4f354c433337ca
2017-03-22GudhUI CMakeLists.txt modifications. It is main CMakeLists.txt to find CGAL.vrouvrea
Was not compiling with CGAL 4.3 for instance. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2223 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 22b363c81cd69a296e1fc362eab0f5e5d171e402
2017-03-22make th same example as in C++vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2222 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c18c9aaeaab7005a7dc1471f7bff6acc94dad8d8
2017-03-22rename get_star functionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2221 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fff57c25d175a6aed355efeb449f94a1af2249b3
2017-03-22Rename plot_persistence_diagram and barcodevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2220 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 66a06ffdc62d5284119df80c3f104a48568cd241
2017-03-22Interface insert_simplex and insert_simplex_and_subfaces in SimplexTreevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2217 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1e426a8cbcba192a50b05b5cc7fa4a0fd50d8c9b
2017-03-21Roll back bad modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2216 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 832a1770a18476c18e7ba75754c5ee89225eaf34
2017-03-21expansion method and its associated testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2215 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32ad429f301b35c064eadef36dbe4e7f64f6490e
2017-03-21Memory leaksvrouvrea
Landmarks initialization were not correct git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2213 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ab7e0adb6f36b2ccfd52a8c652c1ea35258a7aa1
2017-03-21Precise when to use set_dimension functionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2212 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9e17d1b5e8a96fffe48e1b1e7b6d766d2abf33e0
2017-03-21Rename get_star_tree with get_starsvrouvrea
Rename Complex_tree typedef with Complex Typo in Rips doc for csv files for distance matrices git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2211 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a6be0ce66ef3c2c71ad43b328cebd673862a76d2
2017-03-20rename get_coface_tree with get_cofacesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2210 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c88576269982d87dd2dfd4003811628fee58dc2e
2017-03-20rename persistence function intervals_in_dim with ↵vrouvrea
persistence_intervals_in_dimension git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2209 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7991f11d249a2051d0cb6e7f453b1d6b7bcb7c36
2017-03-20using Base instead of full template class namevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2207 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3471adcb19df0859b5d905f5c5ba7e6e11ba2613
2017-03-20Rename barcode_persistence and diagram_persistence functionsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2204 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f91e283fa6b6b02198ae28a44f41bd761c1c1f48
2017-03-20constify interfacesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2203 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 55cf020d2a7989dc4e7125bcf6f91443aad4dda1
2017-03-19Add installation doc for witnessvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2201 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6a531300cf80731e25b7d1337c79bd5bad0350bf
2017-03-17Add doc for Witnessvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2199 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b256e90ba831aaa268d42a8a390d89fbc73df10f
2017-03-17Euclidean strong witness complex cytonizationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2195 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: de15e40b8f0efcc59b2f07ffb5f5d59ccab8d51c
2017-03-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2194 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8fa0a9eeb6b7064cb1d3d3780d5ab58818f49ec
2017-03-16Merge Last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2192 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 737b10fe34bcc842a1e64522f1eb14c16c7cfec0
2017-03-15Merge gudhi_doc_2.0.0 header generated for GUDHI version 2.0.0 websitevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2191 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1222f9d972e4b866509fb92f79eff97ce804b3c8
2017-03-15Header with correct _config.yml from Jekyll, no more beta web addressvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2187 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2226ee8ee2020d68434027a57babc00da16141ae
2017-03-14Add Windows and CGAL_HEADER_ONLY cythonization supportvrouvrea
Add OFF reader interfaces (required by Euclidean witness complex) Add Euclidean_witness_complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2186 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4d780f05c3409bea47a81e4377dbaf509b9e718c
2017-03-09Strong witness cythonizationvrouvrea
Biblio for doc simplification git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2184 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c191c6b79bb14f799d6cd08ac59a6b007a7874dc
2017-03-08Add witness_complex_from_nearest_landmark_table.pyvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2182 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5e9efcf4c6e50f0864cf473d649dfa26b4ef2cf4
2017-03-08New revision of witness and its documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2181 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5f002c1a58b2daff6c6826a2552d1c101f6810e1
2017-03-08Add sphere points on the grid example and document itvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2177 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f746ffbf946df64df9221304bbb3eb55e5db6b4f
2017-03-08Weighted alpha complex 3d featurevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2176 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a5bb0995c4aa75783666adc174245d4639057b8a
2017-03-07Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2175 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b9b7b4ead23265e8d94ff2fdbae1df2a0d675c92
2017-03-07Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2174 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 50c9f69ac71c817ed8b9e61b81be6547bf89a4b0
2017-03-07Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2173 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b6058421083a34c78d6712cba3e0276facee2354
2017-03-07Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/botteleneck-parallel-sort@2171 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5f184711d02b716db74396dbce1b47bd66edfa28
2017-03-07Add doc for exact alphavrouvrea
CMake for exact alpha Factorization git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2170 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b2ac281dd21313602590fc834e7ad22bbf081021
2017-03-07Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2169 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f8526767e8002cb106f46b8eeb93442b596786de
2017-03-07Factorization of from functionsvrouvrea
Add exact alpha complex 3d example git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2168 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1c55851fd2ebcf8ec553854baca803c08b6634c4
2017-03-07Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2167 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d5ad370dcb11520badc549ffac8ed8e21e0311f3
2017-03-07Remove Kdtree include in Witness_complex.h and Strong_witness_complex.hvrouvrea
Seperate tests using euclidean witness (requires CGAL >= 4.6) and simple tests git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2165 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f5482e2331d59e60757e7b120e98cfcf97699f30
2017-03-06Merge last trunk modifsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/botteleneck-parallel-sort@2162 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 98dd1d8c194e58fa7d565a3b83276ae1a56a9769
2017-03-04Missing includes and const for Euclidean_distance.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2158 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9f2243ec5c2a50b271031b6b8c8148afeb0bc1df
2017-03-03Merge last trunk modificatinosvrouvrea
make sphinx depends on cython target git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2155 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ebb1709872963ffd30a6d31ab596f2715ca14436
2017-03-03Add GPL copyrights on images directoriesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2142 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d6bdcfdefb00263199b22fcc39cdb8826f8f3dbe
2017-03-03Link with TBBcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/botteleneck-parallel-sort@2141 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 80325216eace3cb1dbadbde3f4e5a3985b8feab0
2017-03-03Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2140 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7213c9eb7d01812a5dcf0133ca29cfdca6121519
2017-03-02Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2137 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6d1f49e945104d3b668139520d19d2ea8d4dc4c7
2017-03-02Move variable definition in if statementvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2136 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cb72284bc8962d4d5ec89c8a6d7f10ec559a4d52
2017-03-02Add boost system for everybody because same link error on Win64vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2135 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8e6f53228d81b3b78eedf35a1a74e9f43fe2382a
2017-03-02Use parallel_sort to sort distancescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/botteleneck-parallel-sort@2134 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b3a43683ab1d452845138605488a845a4b694432
2017-03-02Add gudhi patches to user_versionvrouvrea
CMake code factorisation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2133 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: eaf54902bad1a9e2609828f4325b6c465181f553
2017-03-02test if !end before accessing operatorvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2130 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 82e8b58b1452f45668bd7511d528db96c3613c53
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