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2018-09-25Fix unitary testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3902 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c14d5a04ef4abc2367d3a1707a1fcfafb07a9598
2018-09-18Add results.csv file creationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3895 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9a0dc73e2d394042a3edc7e83c49d1fc656079d4
2018-09-17Add benchmarkvrouvrea
Safe version for Alpha complex 3d (missing part if not weighted and not periodic) Need to fix Alpha_complex_3d_unit_test git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3893 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 304c9f89826008eab67a72f3742caa8d6d80f36b
2018-09-11Code review : rephrase a commentvrouvrea
Make tests successfull. Still need to investigate why it fails git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3882 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5649bbe00e6aa39d6f8e7f494d0c3071883bf500
2018-09-10Code review : Fix alpha_complex_3d_persistence utility with new ↵vrouvrea
alpha_complex_3d design git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3877 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 59c028ed6d5a3c85efeb99398a6d2e34c3af096a
2018-09-07Code review : Only one create_complex function with a default argument valuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3876 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 36c2f8ebf6f60d85613c3bad6fa95433780e13bc
2018-09-07Code review : rearrange documentation and examples according to making ↵vrouvrea
choices more orthogonal Rename Alpha_complex_3d_options.h Alpha_complex_options.h as it can be used by Alpha complex dD git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3875 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6c5b105248e4766a44438a187bb130a3722b310f
2018-08-31Fix weighted periodic compilation issuevrouvrea
Test is commented, to be investigated. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3865 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e334d3f27e648cfc23f2d46fb2e2199a4b1922ff
2018-08-29weighted/non-weighted and periodic/non-periodic with fast/exact are working ↵vrouvrea
well (test suites and examples) Still utilities to rewrite Modify GUDHI_TEST_FLOAT_EQUALITY_CHECK as one test was reaching exactly std::numeric_limits<FloatingType>::epsilon() git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3842 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bbd17f90644b4b8444d480ca95da0909e8fe5048
2018-08-28Make fast/safe/exact, weighted/non-weighted, periodic/non-periodic more ↵vrouvrea
orthogonal choices Only examples work for the moment. Periodic to be tested. Add Alpha_complex_3d_from_points.cpp example. Maybe to be removed. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3840 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f5621df603bdb149c52400a6095271ea0f54b84c
2018-08-09Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3761 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7aa4e82e8f90c54c9c6b58e6da5e2ed32a87deb0
2018-08-09Merge ninja_cmake_warning_fix_vincent branchvrouvrea
Fix issues #4, 6, 13, 14, 15, 21 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3760 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32b5cc470f6095a64f102e0e641e13d2fc9d63ff
2018-08-09Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3758 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2b27ab4042979d62c576b610d75c87695bb0d83a
2018-08-09Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3757 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f7f31a9a2448c7e894aa63b46360f59bc92f54b3
2018-08-09Make soft dependency for matplotlib and numpy dependenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3756 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 13a2e6e3eea8a36d0b9bdb4ab1c34f940a8932dc
2018-08-08Fix issue #4 : [CMake - global] List all that is missingvrouvrea
#21 : [python - global] Additional information on how GUDHI was compiled could help to debug users problems git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3751 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ded8b49b7e282dbf262df5695f2b5285a9907551
2018-08-07Fix issue #13 : [Global - utilities] use exit(-1) instead of std::abort in ↵vrouvrea
utilities git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3749 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3235f72cc618dcb6ab70b1826a4d3ce2608fa168
2018-08-07Doxyfile is now generated to facilitate gudhi version packaging and new ↵vrouvrea
module process Doxyfile.in generates a build/src/Doxyfile that is copied by the user_version target (to avoid file generation in sources) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3748 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0a5ab637c2db102a59c994f03f0ec7fadbda3780
2018-08-07Remove if cmake version in GUDHI_user_version_targetvrouvrea
doxygen target is depending on user_version only if defined (defined in dev version, but not on user version) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3747 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2e9533581d7b9ec231b27b7c405dd3817baf4911
2018-08-06Fix issue #14 : [RipsComplex] max_edge_length documented with type 'int'vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3743 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9ef2e20e818fc1c573ce784cd34acb3c6d9970b7
2018-08-06Fix issue #15 : [python - subsampling] sparsify_point_set wrong documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3742 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fcb4ba73cb1c4527a9f772bb9412f5e15c4eafaa
2018-08-02Fix compilation warning that was a bug. Value was not returned.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3726 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5f1b8b40a1e68c655857ccc7b0de7f86a38c63b8
2018-07-31Fix documentation for CGAL version required by 3d versionvrouvrea
Remove duplicated example (cf. the one in the Simplex tree) Add the example for documentation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3713 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 204f77982c61bc30a6ad3218c82b98f8bb49d711
2018-07-31Add unitary tests and documentationvrouvrea
Fix debug exception mechanism git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3712 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 43f66f3843981ab9cd74c117c2b1c6bb9b94810b
2018-07-22Mark functions as inline.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3699 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 431a0f7e2169ac7ebbdc6e4bd3458176030261ff
2018-07-04Fix SimplicialComplexForAlpha (dD version)vrouvrea
Write SimplicialComplexForAlpha3d concept Add make_filtration_non_decreasing and prune_above_filtration mechanism for Alpha_complex_3d Write documentation for Alpha_complex_3d ( still missing the user version) Remove exact static bool from Alpha_complex_3d_options mechanism and add some comments on value_from_iterator functions Fix Alpha_complex/utilities/CMakeLists.txt warnings git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3667 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32e15aaf98df14a43eaef4a4af00de2ec418924c
2018-07-03Documentation for Alpha complex 3dvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3664 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c6d824cdab7ac5ea79ce458dac666d35a9a21ab7
2018-07-02Merge Nerve_GIC modifications from Mathieu (11th of June 2018)vrouvrea
svn merge -r3468:3579 ^/branches/Nerve_GIC git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3659 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9e0e70cccf2829d7d55d241b807aeff0b73094bc
2018-07-02Fix unitary tests after trunk mergevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3658 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 13570cb36f31c353cd8fa58f5b66ac0a00bb0eec
2018-07-02Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3656 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1f02e2f3b3e716d6578be49437e7d0b33fa99e5b
2018-06-29clang-format filevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3653 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 97cf0cc3bee58b1f7d96a3cfa0f20b0f0a3cb7ec
2018-06-27Fix examples and utilitiesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3645 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 67ac8f8151a85988303c48c9453ee42fecb7a97a
2018-06-26Useless includes removalvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3640 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 57223bb2c3b1ad877d89d8627fbd866a726f2118
2018-06-26weighted_alpha_complex_3d_persistence.cpp using Alpha_complex_3d new modulevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3639 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b7e5f4674a56bef537ba5f4dda62e6605bf8c249
2018-06-26Add insert_simplex in Alpha_complex_3d.hvrouvrea
Modify periodic_alpha_complex_3d_persistence.cpp with new module git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3636 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 271e55ce7363a1af991fb107896307887827df65
2018-06-22Compiles run and tests for Alpha_3d, exact, weighted, periodic and weighted ↵vrouvrea
periodic git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3627 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e24d7de108d3e77eaf6319a8165a7c65bec57884
2018-06-22Use unique_ptr to store cgal alpha_shapes_3. Required for not objects_ to be ↵vrouvrea
freed. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3626 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6dc9bbe25757a1a7bef2178ef63876c20d3a38b1
2018-06-19First create_complex versionvrouvrea
weighted periodic option git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3624 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d22e307b12aac1390593541f77cabcccffbc6ad
2018-06-18Add periodic 3d Alpha shapesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3622 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a97b603cf83c5f9a80404dd5786896e51015ee08
2018-06-18Separate options from codevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3621 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d72667f205e03d652c67aa0b4e2546a483c02fb1
2018-06-15Weighted, normal and exact version of Alpha_shapes_3vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3618 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f1b2014fe34b3e7814d9c3d02881c63e10f047b2
2018-06-14css for https version of the website must be in a valid https locationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3616 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6a85178a0299c744e26b7a98e92c515d9a721039
2018-06-14New website header to facilitate releasesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3614 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aca53e98d8dbfcdde96df5be045acc012ba8608f
2018-06-13Version 2.2.0vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3605 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5f3ff4c1fbd5a2a842f821a40ab90584c1dcf8d0
2018-06-13Fix cpplintvrouvrea
Merge branch persistence_representation_bug_fix_vincent rev. 3600 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3603 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7e9364e5294b3433eddcebf273924193da3b0742
2018-06-13Rollback these commit (was just for beta version documentation website)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3602 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c0182e445f444bbf1add347dac217322262db033
2018-06-13Fix cppcheck issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3601 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 44cc04b1609d3b3d40382fd02d4fe15e5ba0159f
2018-06-12Quick fix for infinite loop: drop extra precision in step computation.glisse
I am not saying this is what the code should optimally look like... git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3590 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0253d73afb1b1b565b45d214ea2d948e00c7db25
2018-06-07Fix alpha complex user pseudo code on documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3565 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4b4300ef95fac962dd2c4d6a44c5c9f80ca6bc4a
2018-06-07Use release candidate instead of beta tagvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3563 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 85f92deeb18049186357a93f1d746ad2e5570cc0
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