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2020-04-26Fix alpha complex user sphinx warnings as sphinx was confusing bullet lists ↵ROUVREAU Vincent
and bold font syntax
2020-04-25Fix #259ROUVREAU Vincent
2020-04-25Merge pull request #292 from VincentRouvreau/one_biblio_for_all_sphinxVincent Rouvreau
Fix bibliography for sphinx
2020-04-24Code review: plain instead of unsrt for biblio - concatenate biblio files - ↵ROUVREAU Vincent
undo cgal citation removal
2020-04-24Fix bibliography for sphinxROUVREAU Vincent
2020-04-23Merge remote-tracking branch 'origin/master' into compute_persistenceMarc Glisse
2020-04-23Fix pasto in the docMarc Glisse
2020-04-22Reduce the probability of failure of test_dtmMarc Glisse
It is expected that hnsw sometimes misses one neighbor, which has an impact on the DTM, especially if the number of neighbors considered is low.
2020-04-22Document incompatibility of matching=True and enable_autodiffMarc Glisse
2020-04-22Merge remote-tracking branch 'origin/master' into wass-autodiffMarc Glisse
2020-04-22Clarify the doc of enable_autodiffMarc Glisse
2020-04-22Test value of computed gradientMarc Glisse
2020-04-22Rename local variablesMarc Glisse
2020-04-22Document several optional dependencies of knnMarc Glisse
2020-04-20Fix #279ROUVREAU Vincent
2020-04-20Drop one commentMarc Glisse
2020-04-20Check that dependencies are present before testingMarc Glisse
2020-04-20Merge remote-tracking branch 'origin/master' into wass-autodiffMarc Glisse
2020-04-20Merge pull request #265 from mglisse/dtmMarc Glisse
DTM
2020-04-20Explicitly pass sort_results=True on some testsMarc Glisse
2020-04-20Reintroduce _proj_on_diag, with a unit testMarc Glisse
2020-04-20Add __license__Marc Glisse
2020-04-19Test comparison with persistence_pairs()Marc Glisse
2020-04-19Drop redundant testMarc Glisse
torch.isnan(None) raises an exception anyway
2020-04-19Test gradientMarc Glisse
2020-04-19Unwrap the resultMarc Glisse
2020-04-18enable_autodiff for POT wasserstein_distanceMarc Glisse
2020-04-17Simplify distance-to-diagonal in WassersteinMarc Glisse
2020-04-17Update src/Collapse/utilities/collapse.mdVincent Rouvreau
Co-Authored-By: Marc Glisse <marc.glisse@inria.fr>
2020-04-17Merge remote-tracking branch 'origin/master' into filtrationMarc Glisse
2020-04-16Merge pull request #260 from VincentRouvreau/alpha_complex_improvementVincent Rouvreau
merge https://github.com/mglisse/gudhi-devel/tree/alpha-cache
2020-04-16Fix doc of Simplex_tree about keysMarc Glisse
2020-04-16Update the concept of the simplicial complexMarc Glisse
We use the key now. It wouldn't be hard to use an unordered_map, but since we usually have an unused field key...
2020-04-14Check that the gradient is not NaNMarc Glisse
This can easily happen with pytorch, and there is special code to avoid it.
2020-04-14Merge remote-tracking branch 'origin/master' into dtmMarc Glisse
2020-04-14Doc improvementsMarc Glisse
2020-04-14EagerPy in cmakeMarc Glisse
2020-04-14More testingMarc Glisse
2020-04-14Windows appveyor do not like not operatorROUVREAU Vincent
2020-04-14Merge masterROUVREAU Vincent
2020-04-14Some documentation and examplesROUVREAU Vincent
2020-04-14Some documentationROUVREAU Vincent
2020-04-13Add some documentationROUVREAU Vincent
2020-04-13Tweak to detect fit_transformMarc Glisse
2020-04-13Remove left-over codeMarc Glisse
eagerpy is only used with enable_autodiff
2020-04-13Generalize enable_autodiff to more implementationsMarc Glisse
Still limited to L^p
2020-04-13Fix NaN gradient with pytorchMarc Glisse
2020-04-13Small autodiff tweaksMarc Glisse
2020-04-13Remove Rips_edge_list and review the interfacesROUVREAU Vincent
2020-04-13enable_autodiff with keopsMarc Glisse
This doesn't seem like the best way to handle it, we may want to handle it like a wrapper that gets the indices from knn (whatever backend) and then computes the distances.
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