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2017-06-02Try to remove boost systemvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2504 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fd12c45af5ebeb72c4b49142abab91b46ce1a9da
2017-05-30Make install examples mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2467 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 018b6e55c392b37d02503e7822e0a586061c987d
2017-05-30Add a warningvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2465 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a873c9c6fff031968747c3dec197aec06738c32a
2017-05-19Move src/common/utilities/hypergenerator.cpp in src/common/utilitiesvrouvrea
Management of Python distribution packages make install is now installing utilities and GUDHI python module git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2453 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a85576c7ae062718900f0db2bfb0dd3f26e87177
2017-05-18Modify the way cmake handles utilities, examples, test and benchmarks with ↵vrouvrea
new options to activate/desactivate them. Move hypergenerator as a common utility. Move random point generation from hypergenerator in src/common/include/gudhi/random_point_generators.h git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2442 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e2d13e4b0c09455fb604b684f6d71530352271eb
2017-05-16Modify Doxyfile to make it work with distributed MathJax.jsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2433 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 386ef39799695204b98d43b5a2f36a1a9e91f04e
2017-05-16Add MathJax for distributionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2432 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c0f73996dfdfe217ae2dfc2250e7866d680ae1f7
2017-05-15Use MATHJAX for doxygen documentation generation.vrouvrea
Fix pseudo code for alpha complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2428 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 05ce587c4ba46e164dad02766cbaca40373e3ad8
2017-05-09Fix Windows python module compilationvrouvrea
rips_complex_diagram_persistence_from_distance_matrix_file_example.py shall use csv_file instead of off_file git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2409 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b73613ce923e4bb72f5eae110cf290dc2215994d
2017-05-09Doc issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2407 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 59aa4cbeef583b93f5e0e4416a4cd2903643d8f0
2017-05-02typosglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2392 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6f20690dcf711382a244eef6ce6eccab76315710
2017-04-26Fix warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2381 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: db27facc0c7eec7c48233648c6df4a47f9e09697
2017-04-24Remove unused variablescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2379 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 90fd2f0b1fe4ff48e5ba0ee69db76bed60906ec1
2017-04-24Make compilation and tests out of sourcevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2376 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0bc362b7321ed22af0c20f020eafc98efecbac46
2017-04-24Doc typovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2375 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 181a2d688b3333b202aa7a25768413259c6c8fbd
2017-04-19Fix doc issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2368 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aa8997eb2c66b9b25206688acc5819f2ded0e985
2017-04-19Rename tests and examples to be consistent with the naming rulesvrouvrea
xml test results is now generated out of source git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2364 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae2dd1592b63f4e7da5e17655761697b6daf7dd0
2017-04-18Rename CMake testsvrouvrea
Add specific GUDHI test coverage function Rename cmake/modules/GUDHI_*.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2362 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 071b1eda7d11b1781a9601a013b88a0b2a9b7bf7
2017-04-14Fix doc level inconsistenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2359 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8c141f6c040abcbf76f8eec21b14389ae850318
2017-04-14Remove scripts/generate_version.sh, use make user_versionvrouvrea
Remove GUDHIVersion.cmake.in (was for scripts/generate_version.sh) and CMakeLists.txt mechanism Modify src/Bitmap_cubical_complex/example/CMakeLists.txt to generate files in build directory git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2358 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32c73be6aa9a0a6fcfde09ebf21ff38d48abf5e0
2017-04-14Fix doc level inconsistenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2357 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2da8fae99b18cf215de376980266f1281ac95172
2017-04-14Fix Title level inconsistenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2356 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 755e450afddf28f87164a8f1f22c1f58faf9658a
2017-04-14Fix Sphinx and unitary tests issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2354 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7852df8e3fcea5b0b7f37f79f2b8b34cfd1db62c
2017-04-14Try of a fix for Windows cython find mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2347 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4c93e7042d79bfea7c758e726f6393b97334c798
2017-04-12Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2334 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9461830172c72a205520ae197656c480b1cfcaaf
2017-04-11Fix line length cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2333 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 23035b47dd95c008feb546d7ffb17b96cd7edcfa
2017-04-11Fix some #include ""vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2332 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2c15320d156c2b928e9eb664a2afed8fa9809e7e
2017-04-11Move Euclidean_distance in Gudhi namespacevrouvrea
Fix cpplints git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2331 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bc5609c2df490db50e82b56a5e6d899dc6370182
2017-04-10Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2329 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ba0fbf37ea8108d8c3ca21162d7cb815a92336f7
2017-04-10Fix and rename test farthestvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2328 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f1761bf66bcf6d45f72a051fa9a62c4699e3999d
2017-04-10Typo fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2326 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7c88a0635bdeffc643127106574501ce72645546
2017-04-10mac osx version is 10.12 and not 10.9 (cf. mail Bertrand Michel)vrouvrea
Add text for Windows Python 3.X installation and forinstallation with several Python installed on the system. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2324 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 939d5d4a94c2430de11b3dcbc29a65aad4bfd885
2017-04-07Clarify doc about Squared_distance_d in Subsampling.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2315 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5559e1c426569fba1dd4cd350a8697ab7e3260f1
2017-04-05Use an unordered_set for unmatched_in_u instead of an open-coded flat_set.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2312 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 37137a43f781e4646c4149d9528a6a95e1c642be
2017-04-05In Kd_tree::remove, test the point index instead of the coordinates.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2311 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e8d50867d77eea455c34dc5a89ed9e0f45fbeeb7
2017-04-01remove bad named *_tree() functionsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2300 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 512403fe0838fb2691e0af94c55772bff942b740
2017-03-31Bad choose of exact / approx computationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2293 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ba263cefcc0a76d223e4fba7f21ed96a525d16e
2017-03-31PR : Typo in installation docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2292 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9b048844ac0bd0a7e4485b24b06d7a11ce9f9274
2017-03-31Typo with Perseus-style filevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2291 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d76201ecfd7a1f236a04243fe86ca4eb0c21d8b1
2017-03-31Typo in docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2290 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f71b21674190c3b4c6e472f49680de2ca211cf7c
2017-03-31Fix examples testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2289 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9d386b82c89601da233f7c61254a023ddffc9abc
2017-03-30Move example tests in a new CMakeLists.txtvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2288 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8b2bce4c8be8a34b8fba9c664d2f0b3b60a50c20
2017-03-29Small modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2286 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 34dc48a00ed8270967952b8763006b17f96a13e7
2017-03-29Small modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2285 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4bf077b4d3b729c4d133e242d57d08ed9a04ae76
2017-03-29Declare the Kd_tree directly.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2282 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c017cc9368a167fe99b5004636bcbe8734266d3a
2017-03-28Add commentvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2277 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2df390d8a87130a01fd3cae151e5a057ab85e049
2017-03-28Use only insert (simplex and subfaces)vrouvrea
Remove useless initialize_filtration git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2276 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: eed1a67e2f83e3a1945cc24b11454ed1ef024ba6
2017-03-28Missing a testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2274 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 30330428b0071967367d1708338de0c7d40d8a67
2017-03-28Missing a test for cythonvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2272 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 223961ca5575e07d0db2c93ee0326864166980d8
2017-03-28Longer commentsglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2270 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa5f87490ae2b94cbe6b4789001b0075f8a4726a
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