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2020-03-31changed into import .barycenter for local import in wasserstein, and ↵tlacombe
modified index to remove barycenter doc
2020-03-31removed unused importtlacombe
2020-03-31modified import in test to get consistent with gudhi.wasserstein.barycentertlacombe
2020-03-31added import barycenter on top of the file so that we can call for ↵tlacombe
gudhi.wasserstein.barycenter
2020-03-31removed barycenters specific doc files as those are included in wasserstein ↵tlacombe
distance now
2020-03-31merged doc from barycenters to wasserstein distancetlacombe
2020-03-17removed _optimal_matching from barycenter as it is now handled by ↵tlacombe
wasserstein_distance.
2020-03-17merging master (including wasserstein distance) into wbary ; modified ↵tlacombe
CMakeList to solve conflicts
2020-03-17Merge pull request #236 from tlacombe/optimal_matching_wassersteinMarc Glisse
optimal matching in Wasserstein distance (pot) (Fix #203)
2020-03-16correction of typo in usr.rsttlacombe
2020-03-16correction typo in usr.rsttlacombe
2020-03-16Merge pull request #211 from VincentRouvreau/iterator_over_simplex_treeVincent Rouvreau
Iterator over simplex tree
2020-03-16changed typo in doc (diag --> dgm), used integer for order and internal p, ↵tlacombe
simplify th ecode
2020-03-16changed doc of matchings for a more explicit (and hopefully sphinx-valid) ↵tlacombe
version
2020-03-16Merge pull request #214 from takeshimeonerespect/masterMarc Glisse
About adding timedelay for feature engineering
2020-03-16Merge remote-tracking branch 'upstream/master' into wbary-theotlacombe
merge master to solve hera conflict
2020-03-16Add get_simplices method - contrary to get_filtration method, sort is not ↵ROUVREAU Vincent
performed
2020-03-16added mention that _optimal matching should be removed at some pointtlacombe
2020-03-16update doc (indentation, mention of -1 for the diag) and added a few more teststlacombe
2020-03-13Merge branch 'master' into iterator_over_simplex_treeROUVREAU Vincent
2020-03-13Merge pull request #237 from ↵Vincent Rouvreau
VincentRouvreau/handle_nan_in_simplex_tree_make_filtration_non_decreasing Fix #172 and add a proper comment on the modification
2020-03-13Merge branch 'master' into iterator_over_simplex_treeROUVREAU Vincent
2020-03-13Merge remote-tracking branch 'upstream/master' into optimal_matching_wassersteinMarc Glisse
2020-03-12Update heraMarc Glisse
2020-03-11clean test_wasserstein from useless np.arraytlacombe
2020-03-10fix indentation in wassersteintlacombe
2020-03-10Update src/python/gudhi/wasserstein.pyThéo Lacombe
Co-Authored-By: Marc Glisse <marc.glisse@inria.fr>
2020-03-10fix typo in test_wasserstein_distancetlacombe
2020-03-10correction of typo in the doctlacombe
2020-03-10changed output of matching as a (n x 2) array, adapted tests and doctlacombe
2020-03-10removed _clean_match and changed matching format, it is now a (n x 2) numpy ↵tlacombe
array
2020-03-10removed P[P < 0.5] thresholding ; as it shouldn't happen anymore.tlacombe
2020-03-10Merge pull request #227 from tlacombe/improving_plot_rendering_pythonVincent Rouvreau
Global improvement of rendering with Python tools and fix #27
2020-03-10Fix example - only fails on OSxROUVREAU Vincent
2020-03-09removed infty line plot in plot_diagram if no pts at inftytlacombe
2020-03-06set greyblock to False by default in densitytlacombe
2020-03-05Merge branch 'master' into iterator_over_simplex_treeROUVREAU Vincent
2020-03-05completed as...tlacombe
2020-03-05updated doctlacombe
2020-03-05Merge pull request #239 from VincentRouvreau/parallel_testsVincent Rouvreau
Improve CI
2020-03-05CR: use complex_simplex_range instead of filtration_simplex_rangeROUVREAU Vincent
2020-03-05Update src/python/gudhi/persistence_graphical_tools.pyThéo Lacombe
Co-Authored-By: Vincent Rouvreau <10407034+VincentRouvreau@users.noreply.github.com>
2020-03-05remove ext (submodule directory) from doxygen parsingROUVREAU Vincent
2020-03-05Remove travis and use appveyor for OSx. Fix parallel test by setting tests ↵ROUVREAU Vincent
dependencies
2020-03-05Add some tests and documentation for NaN management in ↵ROUVREAU Vincent
make_filtration_non_decreasing Simplex tree method
2020-03-03updated doc and example handling Nx2 numpy arraystlacombe
2020-03-03handle numpy array, should now adapt the doctlacombe
2020-03-03Fix #172 and add a proper comment on the modificationROUVREAU Vincent
2020-03-03correction missing arg in test_wasserstein_distancetlacombe
2020-03-03update wasserstein distance with pot so that it can return optimal matching now!tlacombe
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