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2018-09-25clang-format all filesvrouvrea
Add safe version alpha complex 3d persistence utility git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3907 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 54b2d0de9231511864df9fa637b60b7ccf34f50f
2018-09-25Constants shall be upper casevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3906 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fcafbe39665a69c6645f8b9d73fc67b98709540e
2018-09-25Code review : use std::unordered_map instead of std::mapvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3903 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 73dd93e44ea8c4029bffd5e6fb5bcbcb634bb525
2018-09-25Fix unitary testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3902 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c14d5a04ef4abc2367d3a1707a1fcfafb07a9598
2018-09-20fixed small bug on persistence diagramsmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3901 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cbeecd2f928b4c4df13acf5a7a2083882fdc98d2
2018-09-18git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3897 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f5fe42a6f42443ca7217c69f8a18780cdb85669e
2018-09-18Add results.csv file creationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3895 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9a0dc73e2d394042a3edc7e83c49d1fc656079d4
2018-09-17Add benchmarkvrouvrea
Safe version for Alpha complex 3d (missing part if not weighted and not periodic) Need to fix Alpha_complex_3d_unit_test git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3893 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 304c9f89826008eab67a72f3742caa8d6d80f36b
2018-09-11Code review : rephrase a commentvrouvrea
Make tests successfull. Still need to investigate why it fails git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3882 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5649bbe00e6aa39d6f8e7f494d0c3071883bf500
2018-09-10Code review : More explicit message when import fails in plot persistence ↵vrouvrea
graphical tools git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3881 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 96f9e3da3bd68d6cba65242b9890c4beb463c863
2018-09-10sparse rips exampleglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3880 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8dfc1b3218d3ac3e97a04bf25e59e2d48fc8db1d
2018-09-10Add minimal testing for sparse rips in pythonglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3879 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 14cde17f1ef634539937b215e82bcfe3c8c784f0
2018-09-10Doc review : Add a link to scipy.stats.gaussian_kde official documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3878 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dd6e1a4131be1ed0306a48f9b095e0d09ddee848
2018-09-10Code review : Fix alpha_complex_3d_persistence utility with new ↵vrouvrea
alpha_complex_3d design git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3877 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 59c028ed6d5a3c85efeb99398a6d2e34c3af096a
2018-09-07Code review : Only one create_complex function with a default argument valuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3876 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 36c2f8ebf6f60d85613c3bad6fa95433780e13bc
2018-09-07Code review : rearrange documentation and examples according to making ↵vrouvrea
choices more orthogonal Rename Alpha_complex_3d_options.h Alpha_complex_options.h as it can be used by Alpha complex dD git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3875 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6c5b105248e4766a44438a187bb130a3722b310f
2018-09-04Use debug or release version to link with python packagevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3871 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: afbd5c833ddc3a525d7091ab186714825109eb87
2018-09-03Code review : Fix remarks for move and copy assignmentvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/simplex_tree_fix_vincent@3868 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 069e920ab3ca9504b5e1c49ab23afe1693f4e6f8
2018-08-31Fix weighted periodic compilation issuevrouvrea
Test is commented, to be investigated. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3865 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e334d3f27e648cfc23f2d46fb2e2199a4b1922ff
2018-08-31Link with release third parties library version, even in debug modevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3863 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e33e15081b3029d9dfd4edc464d91b0db47e1754
2018-08-31Works fine in debug and release modevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/windows_cgal_non_header_only_compilation_issue@3857 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2cc11e2a6e7f8eed6c234c17cad7ff04efdbc659
2018-08-31Try with boost release and debug lib versionsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/windows_cgal_non_header_only_compilation_issue@3856 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 130a4319577ef0ec8c10a87c98b7ffcf6f16d808
2018-08-31Pass parameters to cmake function through double quote for unset variables casevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/windows_cgal_non_header_only_compilation_issue@3855 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 57ff4e884e6575cc7938da3937a7a0090567ad74
2018-08-31Add CGAL_LIBRARIESvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/windows_cgal_non_header_only_compilation_issue@3854 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0b8ee8cf61dca1b74481d556615e55caa39246ae
2018-08-31Add debug tracesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/windows_cgal_non_header_only_compilation_issue@3853 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e8792fc3427cb4f4e92f3297aa3f4aea57c54e60
2018-08-31Add debug tracesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/windows_cgal_non_header_only_compilation_issue@3852 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1a99305e1bfab4d86f5a10371dbad3438f3b0580
2018-08-31Add debug tracesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/windows_cgal_non_header_only_compilation_issue@3851 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 00f56b397048aca87422e6da9385b2622acf1094
2018-08-30A thread_local was missingvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3845 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 739268e9feab840a1d8a405dad696ca95330623a
2018-08-29weighted/non-weighted and periodic/non-periodic with fast/exact are working ↵vrouvrea
well (test suites and examples) Still utilities to rewrite Modify GUDHI_TEST_FLOAT_EQUALITY_CHECK as one test was reaching exactly std::numeric_limits<FloatingType>::epsilon() git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3842 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bbd17f90644b4b8444d480ca95da0909e8fe5048
2018-08-28added function to read point cloud from array in memory + changed a little ↵mcarrier
bit the API git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3841 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f31a3a60b2438d7b767a1ee310d859477330a743
2018-08-28Make fast/safe/exact, weighted/non-weighted, periodic/non-periodic more ↵vrouvrea
orthogonal choices Only examples work for the moment. Periodic to be tested. Add Alpha_complex_3d_from_points.cpp example. Maybe to be removed. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3840 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f5621df603bdb149c52400a6095271ea0f54b84c
2018-08-28Update children on movevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/simplex_tree_fix_vincent@3835 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c9596c534477e6fe098c406307dc8930f71e3a30
2018-08-24Fix move constructor and assignment for the Simplex treevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/simplex_tree_fix_vincent@3831 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff520472b6a1b9f00d0688fbe7dc467af50e16fe
2018-08-21Move assignment and its associated testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/simplex_tree_fix_vincent@3819 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6fd6793b177e0a6b803adf5a710f63d8647a9288
2018-08-21Add DEBUG_TRACES for the testvrouvrea
Add move constructor test git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/simplex_tree_fix_vincent@3818 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4e9baaedcbcb6fdfc7b5ee0ac42bc75559b67bd1
2018-08-21Bad copy assignment testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/simplex_tree_fix_vincent@3815 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c5c9cd3c0553b3367452489e7fd5e874f5093742
2018-08-21Copy assignment for Simplex_tree and its tests (rules of 5)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/simplex_tree_fix_vincent@3814 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4ac0e87aaef3bf29369f25b8eb0c766a6f1b395b
2018-08-17Makes clearer dependencies for each function of persistence graphical toolsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3804 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7572f54368ff235f5e78df74121bf6b1ee107177
2018-08-17Code review : rename max_plots and max_barcodes as max_intervals for ↵vrouvrea
peristence_graphical_tools git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3803 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ad73f7e6cc6d72c3ba24b5ac947265c78a29f387
2018-08-17Code review : Rename max_plots with max_intervals for persistence densityvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3801 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8d20ee2f721b856bba69bc5bc10db26032649129
2018-08-17Doc review : inf_delta explanation improvementvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3800 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 01fff74d79228431d77a46b713ac656ab7e84dc0
2018-08-17Code review : Add a bw_method parameter to plot_persistence_density for the ↵vrouvrea
standard deviation of the Gaussian git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3799 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3bbc988434951bb429acd44b1f31f8310bb9ba9c
2018-08-17doc review : modification of persistence barcode example to make it more ↵vrouvrea
relevant git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3796 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 17acc09cdf7d09b13c177334efb1e309c4fd8d9c
2018-08-17Doc review : rephrase max_plots explanationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3795 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f6059d3a242eed53dfdddb76ffed33f99892f4bc
2018-08-17Code review : add a parameter to select dimension for ↵vrouvrea
plot_persistence_density. Default is None and mix all dimensions git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3794 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 493f5ecfad2bcf0ee4a40ec7b315863c471d088f
2018-08-16Bug fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3788 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d8b898ca963d8d956307bb1dfd8abea1acbe6c96
2018-08-16Code review : Try to import module. Functions are unavailable if not available.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3785 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 53c89a30f7992aa8d20e8330628c03291cea6473
2018-08-13Clarify installation, utilities and examples generationvrouvrea
Add a link to the Hello GUDHI World project git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3776 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bb4dea879baac0280b38ee7ab9f466e0c090a38c
2018-08-13Modify GUDHIConfig.cmake in order to have :vrouvrea
Order is : 1. user defined GUDHI_INCLUDE_DIRS 2. ${CMAKE_SOURCE_DIR}/include => Where the 'cmake' has been done 3. ${CMAKE_INSTALL_PREFIX}/include => Where the 'make install' has been performed git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3775 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 506357257ce261cb2778e357ca902401da4838e7
2018-08-09GUDHI_CAN_USE_CXX11_THREAD_LOCAL was missing in ↵vrouvrea
Persistent_cohomology::annotation_of_the_boundary git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3764 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d53de701470203e48f76896e2859d1df670564c
generated by cgit v1.2.3 (git 2.39.1) at 2024-07-03 11:00:56 +0000