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2018-11-21Code review : Use # error instead of static_assert(false, ...) for CGAL ↵vrouvrea
version detection Doc review : Better document CGAL types (FT, Weighted_point_3, Point_3, ...) Weighted alpha complex 3d example simplification git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@4009 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 187d7a08468c96192b3cb82c93a2df5b425290f9
2018-11-19Fix compilation issue in debug modevrouvrea
to_double(*it) is also available if *it is a double Bad comment in Value_from_iterator between Epeck and Epick git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@4005 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cba42be09eeee39a12a6f0adf8ff72f9147f5d1a
2018-11-19Merge last trunk modifications and remove the note about create_complex ↵vrouvrea
max_alpha_square git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@4004 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 64548e4d0674fb5dd07645eee5c63785b099a168
2018-11-19Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@4003 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94bbb0a5588ceee1ecf73d0503892e2f6c78274f
2018-11-19Fix cpplint and no more need of incr_dim in propagate_alpha_filtrationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@4002 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7e4a3924d93b8bbb235376bf074811ec827f4e9d
2018-11-17Make it clearer that create_complex can/should be called without a second ↵glisse
argument. Move the test restricting propagation to dim>1 earlier. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/AC-glisse@4000 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 108a3ce1b96e097d5218f9154c7f17c13203cfa1
2018-11-17Simplify example.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/AC-glisse@3999 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ec94f4c900994fea36d76663a352bf9a5cf232c9
2018-11-17Repeated "if" in the doc.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/AC-glisse@3998 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 39df24b52cd76333ffcdadfb7d9102ff8c29c3c8
2018-11-16Code review : Simplex_tree is a complex not a simplexvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3996 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5b361b52c6fa4b977e807946f48bb490de5d9d87
2018-11-16Doc review : Add a note to explain setting max_alpha_square value won't ↵vrouvrea
speed up the complex creation, on the contrary. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3995 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 293e99e3946641f042f862c267baf548b08e53ca
2018-11-16Code review : Factorize some templatesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3994 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fe719a7bae84c6378bc9dc583de97414e6f8cf74
2018-11-16Doc review : "shall be of complexity ***type***"vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3992 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8ab7645755e3aa0211d39935db6edeb059c05b43
2018-11-16Code review : Boost minimal version is now 1.56. No more need to test if < 1.53.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3991 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a38b391f763d9aa0aff7746f3a82ee305386b28e
2018-11-16Doc review : User version bad description for Alpha complex 3dvrouvrea
Add a comment for alpha complex 3d example creation for templates Code review : SAFE is now the default version git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3990 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a283cc630ac78634d6700aefb981d130c9464024
2018-11-14Fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3981 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6ce28c75070b0f5d962472f5452e4b03fccbd94f
2018-11-14Merge last trunk modifications and resolve conflict on ↵vrouvrea
src/Alpha_complex/utilities/alphacomplex.md git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3979 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2a63709432810154d7939e9bdd74f9d55d0aee43
2018-11-14Fix https://github.com/CGAL/cgal/issues/3153vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3978 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 41b598d277452a2ebcf9eedc3a7e144d96e46b1d
2018-11-14Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/simplex_tree_fix_vincent@3976 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b246c9007b06ed57d59dc1d18b02262d9c765fb9
2018-10-31Make dependency with boost 1.56 instead of 1.48vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_1.56_vincent@3967 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a5941b8c4f65ec8e6f62117aceb5f22e0142f255
2018-10-24True interleaving distance for the sparse Rips.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3964 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6c342750c0ea2e7d48e8c3fc9cc2a4d04f8b379b
2018-10-18Add persistence_dim_max argument in simplex tree persistence documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3963 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ef8f3b0c2b0e3cdbda73687f1e65877213918830
2018-10-17Alpha complex 3d test was not checking CGAL is 4.11vrouvrea
Rewrite CMakeLists.txt to detect CGAL 4.11 for Alpha complex 3d git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3962 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ccddf06201760ef4fddc4432a3b208b8b0213f7
2018-10-17Merge branch sparserips-pythonvrouvrea
Fix doxygen bad link on sparsify point set function Fix some lines too long git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3961 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94946e2dd7853bd65d6790546ad2ef8a35d298c1
2018-10-17Some indentation fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3960 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6dce53b98bc0b299a3621602f385b3b44e16d489
2018-10-10Make RipsComplex a clickable linkglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3942 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 642ae449f85cf8516fc632716ea14b22f74ec517
2018-10-10add myself as coauthorglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3941 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 61cf8acdce3bc5cb0c8261166e195eccc3f8bb54
2018-10-10add example to the list of examplesglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3940 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fe3c41785e3bb72766f7a817851583f82b9f7d15
2018-10-10epsilon + code blockglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3939 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6a88d96a67d9d02f95e63fd627c295abebb49ce8
2018-10-10Use math instead of unicode for epsilonglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3938 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8cccce774b7406d90a55d0e2827fad6dc3855b39
2018-10-10Example text and copyright yearglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3937 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6d5bf6a2c55f7c4fd4f3f5159651b3ffa057ffdd
2018-10-06Doc tweaks.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3936 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3c75c674876bcb38d0a87de41d406832baf61b55
2018-10-06merge from trunkglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3935 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 81f81cb6b39ece77718c8b03d408a90789946c0f
2018-10-05Message to debug Mac issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3934 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 24e8a83ab317c5d94140638c76f91e68c1b3ce0f
2018-10-05pastoglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3933 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3fc8b696f0c457256e0c8bf74ffffa580dbb69d4
2018-10-04Documentation change for github websitevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3932 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7044071afd3a3e629ea66ed3647c00d023f60692
2018-10-04Merge branch windows_warning_removal_vincent to fix warning level at 3 for ↵vrouvrea
Windows (level 4 is too verbose) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3929 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fff76c74c6ccea48e3bba55fe929e58557c09b3e
2018-10-04Merge of branch plot_persistence_density_vincentvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3927 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a996b8e1ddcdb53f9ea6dff341ae5f1bad26639c
2018-10-03Modify "-pedantic" compiler option management in order to be tracedvrouvrea
Modify windows warning level git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/windows_warning_removal_vincent@3926 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1c6e61fb968b6b4072b86a520e2edf78aedf1ffa
2018-10-02Code review : Factorize copy_from and move_from for copy/move assignment/ctorvrouvrea
Make rec_copy private Factorize root members recursive deletion In move, test that (map_el.second.children() != &(complex_source.root_)) instead of (map_el.second.children()->oncles == &(complex_source.root_)) => more efficient Support self copy assignment detection No more use of std::swap in move assignment git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/simplex_tree_fix_vincent@3924 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3aa3727294e54b4ffbc48c3cdb901facf3cd59d7
2018-10-02Merge of last modifications on Nerve_GIC branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3923 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 785b87581429e8973b9660db0940b9dfb5d37827
2018-10-02Catch exception by const&glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3922 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1b0cea99516d6b42e5ab3b0fdb21468b321e6d6c
2018-10-02More doc changes for python sparse ripsglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3921 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f9a33e3c4a6fc6d68a81b753a88ff9d39bdcfb9f
2018-10-02Doc review : Explain that plot persistence density function doesn't handle ↵vrouvrea
degenerate data git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3920 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7794f7959b98b0245e26077d2f2639f33655d5c9
2018-10-02Code review : remove executable propertyvrouvrea
Doc review : Rephrase inf_delta explanation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3919 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b45697b675a20cdca7bb42fa7a555df6c35fe0fd
2018-10-02Doc review : "Selected points are" -> "Selected intervals are"vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3918 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 79857a4609428fc623f8f4656762261ea664cf12
2018-10-02Doc review: max_intervals documentation in plot_persistence_densityvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3917 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 90cfd77ad4aad4cdb0937f43dd4f802688f98295
2018-09-28Fix typo in installationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3915 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b7f7c3344fef9915a48ee29764063a91f3d860a4
2018-09-28Python Nerve and Graph Induced Complex was introduced in GUDHI 2.3.0 (not 2.1.0)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3914 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8e34cf876daf73288caed371c7ce9c51f07fbf7f
2018-09-28https://gitlab.inria.fr/GUDHI/gudhi-devel/issues/32 - [Cmake - Qt5] CMake ↵vrouvrea
outputs an error when Qt5 is not installed Modify/add cmake messages for missing modules git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_missing_modules_clarification_vincent@3912 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 37e1035f7c27ce994e05386801d72959696de7d4
2018-09-25merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3908 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ab0fe69130ba3cbb329e0e975053809180edba5d