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2017-08-24Not compilig code with the problem of conversion betwen python and C++ ↵pdlotko
objects I mentioned about. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2625 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4caf296dc6191ea54d42e997f582539726283f4f
2017-08-24modification of the style according to Vincent's comment.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2624 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5d035eb44fe056115217965d1cbc61308ed3a6ef
2017-08-24A comit just to make sure that I have the right version in the repo. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2623 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6f3bca84a3538a7231dce134b6a944f7a11b18cd
2017-08-23Adding documentation.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2622 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dc133bf6fcfe3c7f46aacaf3ad5702232ea5874a
2017-08-23Modification that should finalize persistence representation diagrams sython ↵pdlotko
interface. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2621 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a4efe5b06b30c7765e16ba13f98aca39925fafe7
2017-08-23Ading the interface files. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2620 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7f495bb2f41e18481661d1b73865a42c2cdcb5d0
2017-08-22First almost working version. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2619 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6f677549e1889ffe29125d2550b2a4a57099b3f5
2017-08-22cleaning up the mess with names.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2617 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cd558be592a050f598fc5a22e012a31b7690c5c6
2017-08-22First version of persistence diagrams cytonization that compiles (and create ↵pdlotko
strange behavior) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2615 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0a2a8ea77c654968e3be476c118f9cd3db0e9570
2017-08-14Adding a code that use Clement's procedure to read files. Correcting some ↵pdlotko
samll errors. Now the code is ready. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2610 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b2947d1c484d661eca6c32fe5386461e741b76f9
2017-08-08Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2602 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 09efbfb4db1c3bab606b63b3365ca5451ab3d029
2017-08-08Fix bug in read_persistence_intervals_in_dimension for only_this_dimvrouvrea
Add unitary tests for read_persistence Add .clang-format to clang format new files git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2601 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 28e870973f9ebd686d503246202fa6d6a549e9e3
2017-07-10simplex / complex confusionglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2596 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 77c093029d3e2518260ce59705110df3fbfe11e3
2017-07-10Cubical: use +inf instead of UINT_MAX as filtration value for non-simplices.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2595 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c578be16d9559b6d271cdb63be3a58a015735ab7
2017-07-03Rename cythonize_gudhi.py in setup.py to be conform with Python convention ↵vrouvrea
(for easy_install and pip) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2578 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c514a7c5096293380254339e7e60782194040823
2017-06-28Add a commentvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2566 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 64cd59ca30ff82a1c116df20c4cee38a795dc518
2017-06-28Merge of branch boost_system_no_deprecated_test in order to :vrouvrea
- remove boost_system library dependency - repair conda package compilation issues found - Use Gudhi::Clock instead of boost::date_time library git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2565 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d68764ab186bd44f2b2253ba21ad1c0e09584455
2017-06-28Merge of the branch read_persistence_from_filevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2564 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b534b8866e25cf86db1483d141ac217c82b36384
2017-06-20Missing typedefcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Spatial_searching-Add_radius_search@2556 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3354bb63d0839ae8377e9c11ef2a1168cce7dd20
2017-06-20Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Spatial_searching-Add_radius_search@2555 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3d0a3b2988bbbd0baa19fc09ba77e4e58e330a89
2017-06-16Merge last modifications from read_persistence_from_file branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2551 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7b90e15bc5128dc9be94c6fa21028e1deb20647a
2017-06-16Fix auto lambda (requires C++14) compilation issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2550 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: df64cfdde77500b06f00432a1d1532518cd4dd37
2017-06-16Fix CUSTOMBUILD : error : don't know how to set runtime library search path ↵vrouvrea
for MSVC git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2549 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94c7625b3bc8e943e3856e0e65dc65bb5d8cd0f7
2017-06-16Add warning about boost_thread link for the Mac GUDHI python modulevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2548 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4a9f6c43f4868bd4f303579c22fdc7a54728e68c
2017-06-16Fix Python module version numervrouvrea
Fix link with external libraries git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2547 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e2f47e860ea4608a4d298fa4772d750ac540be5a
2017-06-14Remove birth<=death check (should be done by the caller if necessary)cjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2544 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ce50159f4bf779a2a42d357cf1c2aa290feaf9b9
2017-06-14Fix try vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2543 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: da6eb0ef7b79c0d21d8e98d17d78459d1768a5db
2017-06-14Add traces for debugvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2542 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a9e8098443114a4fe6e9c19e6410169580c134c6
2017-06-13Try to fix Windows compilation for Condavrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2541 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: afa1b10e300aafbc92a85b3519f4b39add2ae6e4
2017-06-13This should never have been commented outcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2540 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5e5fc971986908e5b9383130704536686e1b66ea
2017-06-13Merge read_persistence_from_file into persistence_representation_integrationcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2539 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2bfc0f855b4814946c5cad892d6314d147db1caf
2017-06-13Add header and namespace + remove unnecessary includecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2537 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc2da43c18649c606ac4760a923684f9eef0c95e
2017-06-09Rewrite Contraction and Skeleton blocker time display using Gudhi::Clockvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2535 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e2b5c1e152fd7bdca9d07db0390944409942ba53
2017-06-09Create a new page for file formatscjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2534 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dc0d836b9df68a3f339dcbc6b8ff51577faf3d7b
2017-06-09Throw exceptions if file not foundcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2533 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b412f432aeac6aef07ac2d9d65d50dc8f508c2e6
2017-06-09Missing "return"cjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2532 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8905e0d3406cbe26615b83ab7056e7fd5bd8ed0e
2017-06-09Change names and adapt examplecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2531 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 833a51dd03ddccca38c6011834bb58667d63ccbf
2017-06-09Homogenize DEFINE profiling name for subsamplingvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2530 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 99176a6381a5c81298d94a781b996904ff2e1acc
2017-06-09Remove boost date_time dependenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2529 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: daa13fc0046ffdd72577bb1b399fcbdc8ef5033c
2017-06-09Remove boost timer and chrono dependenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2528 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5bfb8bd5a6e49dbea9fbfbdc1d748423fc930913
2017-06-09No more need of find_the_lib cmake macro to find Windows boost lib namevrouvrea
Fix cmake warning on if with quotes git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2527 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a352820ab0a596961b9851d4a30c40196a70ff98
2017-06-09Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2526 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 307d82b1c9be8629bdcb89d88e4e6d9deb1ade29
2017-06-09Tangential complex test must link with boost date time libraryvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2525 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2f62d58f2915eead697ba5fbb02e69719f6e471a
2017-06-09Add BOOST_SYSTEM_NO_DEPRECATED definitionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2524 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4718264666a9289a46f282cfcf3200481966c0db
2017-06-08Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2518 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 151fc33b9b13d43f331de0a3745375f9688684f1
2017-06-08Add modules as CMake options in order to be able to activate/desactivate ↵vrouvrea
compilation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2515 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 53d5e669ad310c9d8d17c7f95f1e07c3bf658d77
2017-06-06Fix typosvrouvrea
remove LateX documentation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2514 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 221bb6c675a47aca0f7867dde37b9db556f21e60
2017-06-06Make build out of sourcevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2513 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7b6b18858d5e71613c4c15c4c262b4c4b5a6ac8e
2017-06-02Fix install issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2510 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c081183c9876761dace595a09ec04fe220846ed6
2017-06-02Get rid of Boost_system library linkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2509 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 52deba0f2212767b99b801810d356e55417225db
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