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2016-09-09isnan must be preceeded by std::vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1486 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94adb015da0957f3b4ce3f5742f9cb0cf57b6284
2016-09-09Add a comment for assert that explains null_key mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1484 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 12246383db2c71ce36d03e5702180605459e6fe3
2016-09-09Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1483 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1eafe2e93f1fc3a2780d9452aae1981481786f95
2016-09-09merge make_user_version branchvrouvrea
Commit of new doxygen header with "They are talking about us" section. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1482 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 44a65247177c6f2c72bbbebd88042aa036c26bb2
2016-09-08Add doxygen target for user and developper version.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/make_user_version@1481 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b76661a6d3e91508ffa21f1e183a5e822f6a92bf
2016-09-08Make directory fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/make_user_version@1480 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8515623b6556f183d849ea1ec6e667d23afeff2
2016-09-07Add GUDHI user_version target to replace generate_version.shvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/make_user_version@1479 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b41a86ec3bed234b8fa1988b48de058ab501c392
2016-08-25Add a comment on MiniSTOption Simplex_key type definition about the maximum ↵vrouvrea
to be reached git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1456 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 476838c17d5f6e8745661ee0a67295ce65828f43
2016-08-25Modify the comment about uint_8 -> max is 255vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1455 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6ca626c7d0f4a690587946bf7b9e4d31c8effc23
2016-08-25Modify SimpleyKey, SimplexTreeOptions concept and SimplexTree documentation ↵vrouvrea
about Simplex_key type (can be signed or unsigned). git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1454 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 562aadf6d7491ea7f7144a3394dc78bdabc9e9f1
2016-08-22Clarify installation documentation by separating in a section optional cotsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1446 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5c5a0544148248f16f03c888b2e8598bc2076a9e
2016-08-05bad tag termination for doxygenvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1421 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7665d06c502a1ed93d87d0393e630083e34bc846
2016-08-05Fix the 3 billions of simplices limitvrouvrea
Add some comment and documentation about the new limit (4 billions) Rephrase third party library installation documentation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1420 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95b20677e455b61578da74aabbd3764b4a27816d
2016-08-05With the good include cstdvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1419 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 864b9995ec8675e1578bccf81126959a4a5a22c4
2016-08-05Modify plain_homology to show a Simplex_key type modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1418 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9d9c99b8d8acd8a6fdbfe09601ffe6826ca04857
2016-08-04Make GUDHI Cmake less verbose on CGAL package findingvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1415 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2eebce43b0f75ab1cef3a2fe6f2c1bd0b38672a9
2016-07-01Eigen3 find_package factorizationvrouvrea
CGAL find package in root CMakeLists.txt for Witness complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/eigen3_cmake_factorization@1377 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32137f7687837c63ecfab3a2d11114b27873a1f2
2016-07-01Merge of fix_naming branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1373 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cdd9722e1d58fca13de0f9a9cf0404eb3a22d98d
2016-06-24Bug fix in Gudhi 1.3.0 documentation - Alpha_complex_from_off.cpp and ↵vrouvrea
Alpha_complex_from_points.cpp requires CGAL >= 4.7 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1346 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e6f0966710d6b07f629490d4b6068d087777488f
2016-06-16Merge FindTBB patch for cmake.vrouvrea
GMP and GMPXX are required only for multi field persistence. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1307 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 56a66e166a07b9eb22ec0d8d05ec66bb5162da5b
2016-06-16Try with 1307 points on a torevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1306 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 82c15cf0810c287c1d8728c13e7fcc1e75f98af6
2016-06-16Make a simplier test for Contraction as it is too long under Windowsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1305 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8269c97d1be121be164afe0c8720863541b5799e
2016-06-16Remove GMP and GMPXX required for all persistence examples. Only for ↵vrouvrea
Multi-field. Update doc. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1303 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5ade88a9525f04ac45e2ddd65881da1771954ef6
2016-06-16gmpxx is required only for Multi-field persistence examplesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1302 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 567bf69e3efba23f065d296c2b3d69578c377be3
2016-06-16Fix find TBB package for msvc 2015vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1301 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a76105ff52729d8170eb88f5a5cbbce06b65b0ad
2016-06-16Fix after code reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1299 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2c58cbcd94f72930f8516121f47cace95a84511c
2016-06-14data points generator to follow convention namingvrouvrea
Alpha_complex instead of Alpha_shape git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1278 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 680d599dce4b87a570083ac16c6574166d7af47d
2016-06-10Rename namespaces according to conventioncjamin
+ Missing Boost_THREAD_LIBRARY + Useless typename + Use TBB_LIBRARIES git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1274 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5c02ec481b62ef52b40d849e76e3d333e2ca4e7c
2016-06-10Useless typenamecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1271 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dcc10421c0e2ce26abbfa93176c62d6c834bb5d3
2016-06-10Use TBB_LIBRARIES instead of TBB_RELEASE_LIBRARY + missing boost dependencycjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1269 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d39ecf562678c53f960467e7cb14eeaff4b938c4
2016-06-08periodic_alpha_complex_3d_persistence modification for is_cuboid_3 to be ↵vrouvrea
customized through a file. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1261 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9862a35dcdfc0dbf0eff01375ea716f094833127
2016-06-07Rename projects in CMakeLists.txtcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1257 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a51e43d795b0c246d0949c7566aa57d3e15925c7
2016-05-30Missing documentation for parameters.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1220 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 190cfccdca4d4fd15066ad04885d5dc19428d59c
2016-05-30cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1219 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 81a6208f769c5237d4f81bc97fc1f3d581e733be
2016-05-26Add doc, examples and unitary testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1213 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dc7980ef3f1baef17f2e42770da146d6c961e672
2016-05-26Betti number fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1207 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5dacf1565eee2fe83781b0bdfb05898ffa36fe66
2016-05-24get_persistence and Betti numbersvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1190 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6da18e680111a9a1ad7753779a94a1e8ce49702c
2016-05-19Seperate doc from code in Persistent_cohomology module.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1184 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 90b406b11cfa6356243bb4e881c8c7db06f14d6e
2016-05-10Clock.h requires Boost.Date_timecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1159 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 536869c84e7ced010376bc7c8a7d9608764e7247
2016-05-10Missing "include(${TBB_USE_FILE})"cjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1158 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 61e131f64d4abcf238c24da563fe58703e450346
2016-04-16Less CRLF line endings.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1135 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 83328005a983668b00961f069672e97493e42a34
2016-04-16Minor tweaks to alpha-complexglisse
* use the dimension of the kernel for the TDS * recycle a vector git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1134 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 590f625287629dd041afd5ce479c99b48a476b64
2016-04-15rename parallel_rips_persistence in rips_persistence_via_boundary_matrixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1129 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5c8b71aeb701a181381bf8d628ed65f1d7e214df
2016-04-15Merge of periodic_alpha_complex_3d_persistence fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1128 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 90dabd086a0c5be05ac4eea9b4b58729288b1315
2016-04-15Filtration values are alpha square values for periodic_alpha_complex_3dvrouvrea
Mention it in README git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_alpha_complex_3d@1127 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6085fc3e79db765c041a06d6d05dd3d28685f7bd
2016-04-15periodic_alpha_complex_3d_persistence.cpp bug fixvrouvrea
README values in consequence git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1126 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ce435789e89e1cefe1023a6d73b8606989fca3ba
2016-04-15Periodic bug fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_alpha_complex_3d@1125 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2540ab0edd3f26219bbc3cbd7068e7f5a043f7c2
2016-04-15example result file forgottenvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1124 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0633f46fc110ac757d3eeaeb4979d67f4726a642
2016-04-15example result forgottenvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_alpha_complex_3d@1123 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0678c13104b203e2a329c44aa6db04e9283f4580
2016-04-15Doc bug fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1122 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc0c6e2065540b300e012a4e39b33b5eda4e5318
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