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2016-09-27ajout image botlleneck distancefgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_integration@1571 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dc043ad1f4dc213dd893277eb4f5b43c79acbae0
2016-09-27more details on bottleneck distancefgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_integration@1570 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b784a4721fca70c5a556ef0251241ad153a2b301
2016-09-27Fix naming conventions and cpplintvrouvrea
Add Bottleneck_distance to GUDHI_MODULES in GUDHI_user_version_target.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_integration@1569 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b96a2be25477ddf227e43d9941989f93a0f626bb
2016-09-27Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_integration@1568 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 14c192615a0b9b79121a8395e721978b72272536
2016-09-26tentative ajout documentation bottleneckfgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_integration@1567 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5177eb3197263cfe272f981439317cdb4e8909c3
2016-09-23Fix doxygen warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1551 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 309e1612aa82a9aac11e160be6f89abbd751fd1c
2016-09-23Fix doxygen warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1550 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 39ef2513b5d84cb392677ba10718f5e47734884c
2016-09-22Fix a bug on gcc 4.2.1vrouvrea
reference to non-static member function must be called git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1544 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c5fdb03806241da2d7b0a92b73deb36791f74320
2016-09-21Modify test that is not working under Windowsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1525 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0f9eca7c8a11b7578fe9cb5acf3097e704288c2d
2016-09-19Merge of warning_fix branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1512 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8fd75ab3cb6a02013df18f6d5048755d39524b70
2016-09-19use of std::vector for unitary test instead of CGAL points typevrouvrea
rename unitary test as stands in convention git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1511 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b768b5a6bb0fe823abe6cbbea28d49c7ecb39a9d
2016-09-19Rename off file reader as stands in convention.vrouvrea
Add an example with a vector of double for point type. Fix SO3 OFF files accordingly to OFF file standard. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1510 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff61bed1f1895bc5bf1af4ae946e2a84a692c390
2016-09-19Don't know why this test fails on win64 : assertion failed vector iterator ↵vrouvrea
not incrementable Workaround git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1509 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4e29928ca7198b9c98aee8d961900910d51cd5f3
2016-09-16No more need of Test.hvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1508 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a0436136ab366116b61d0630a3da2b6407291db9
2016-09-16Rename tests according to conventions.vrouvrea
Add xml UT generation for the Boost tests git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1507 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 17a39f49058182586307f13511f78201ef2615dd
2016-09-16Rewrite tests wit BOOST testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1506 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5afe034e18381c4921987457fd75f15c21b3aed1
2016-09-15remove concept dir for Contraction (empty)vrouvrea
remove unused using namespace git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1505 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32785bb7a8062d828069f22b0d410afa3e57f702
2016-09-15fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1504 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b0036e77dafec3301dd9f130265e1513a82cddf4
2016-09-15Fix cpplint warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1503 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b4e1ec1b6cc95a6a7207e68fb31e064c0e3bd065
2016-09-15Fix cpplint and warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1502 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: afc7d137b66225954ebfe37a823f1f0b6bcfe7a5
2016-09-14Fix Bottleneck_distance module to compile with official CGAL releasesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_integration@1495 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 91047e5d99edbb66fe8ad06d1b930a0c83b47cf2
2016-09-14-Wsign-compare is included into -Wallvrouvrea
-pedantic is recognized by icpc (and also gcc and clang) unlike -Wpedantic git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1494 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6ad63e46a4e077bc4e16852eb0cb443db7c5197d
2016-09-13Merge branch bottleneckDistance on a up-to-date branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_integration@1492 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bccdeaf8456b7b88ad2da71205dbb4c5d08a53ee
2016-09-12Gudhi 1.3.1 in Doxyfilevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1490 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f5a84ac81c1bac977c8bbf4551e0ab626b64fece
2016-09-12Intro_simplex_tree.h for filtered complexes module documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1488 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b9dfa3d056b4216efe02c8cb0323bdd8805b2756
2016-09-12Modify filtered complexes sections and examples.vrouvrea
Modify persistence sections and examples git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1487 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6b0bdc7199f7229ac152175c4cbc6ebd79c9bc67
2016-09-09isnan must be preceeded by std::vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1486 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94adb015da0957f3b4ce3f5742f9cb0cf57b6284
2016-09-09Add a comment for assert that explains null_key mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1484 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 12246383db2c71ce36d03e5702180605459e6fe3
2016-09-09Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1483 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1eafe2e93f1fc3a2780d9452aae1981481786f95
2016-09-09merge make_user_version branchvrouvrea
Commit of new doxygen header with "They are talking about us" section. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1482 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 44a65247177c6f2c72bbbebd88042aa036c26bb2
2016-09-08Add doxygen target for user and developper version.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/make_user_version@1481 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b76661a6d3e91508ffa21f1e183a5e822f6a92bf
2016-09-08Make directory fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/make_user_version@1480 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8515623b6556f183d849ea1ec6e667d23afeff2
2016-09-07Add GUDHI user_version target to replace generate_version.shvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/make_user_version@1479 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b41a86ec3bed234b8fa1988b48de058ab501c392
2016-08-25Add a comment on MiniSTOption Simplex_key type definition about the maximum ↵vrouvrea
to be reached git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1456 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 476838c17d5f6e8745661ee0a67295ce65828f43
2016-08-25Modify the comment about uint_8 -> max is 255vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1455 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6ca626c7d0f4a690587946bf7b9e4d31c8effc23
2016-08-25Modify SimpleyKey, SimplexTreeOptions concept and SimplexTree documentation ↵vrouvrea
about Simplex_key type (can be signed or unsigned). git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1454 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 562aadf6d7491ea7f7144a3394dc78bdabc9e9f1
2016-08-22Clarify installation documentation by separating in a section optional cotsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1446 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5c5a0544148248f16f03c888b2e8598bc2076a9e
2016-08-05bad tag termination for doxygenvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1421 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7665d06c502a1ed93d87d0393e630083e34bc846
2016-08-05Fix the 3 billions of simplices limitvrouvrea
Add some comment and documentation about the new limit (4 billions) Rephrase third party library installation documentation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1420 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95b20677e455b61578da74aabbd3764b4a27816d
2016-08-05With the good include cstdvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1419 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 864b9995ec8675e1578bccf81126959a4a5a22c4
2016-08-05Modify plain_homology to show a Simplex_key type modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1418 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9d9c99b8d8acd8a6fdbfe09601ffe6826ca04857
2016-08-04Make GUDHI Cmake less verbose on CGAL package findingvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1415 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2eebce43b0f75ab1cef3a2fe6f2c1bd0b38672a9
2016-07-23read filesfgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneckDistance@1393 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d7f1b1166b65f7d7abc007abb47d86f8d4ba4157
2016-07-01Eigen3 find_package factorizationvrouvrea
CGAL find package in root CMakeLists.txt for Witness complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/eigen3_cmake_factorization@1377 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32137f7687837c63ecfab3a2d11114b27873a1f2
2016-07-01Merge of fix_naming branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1373 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cdd9722e1d58fca13de0f9a9cf0404eb3a22d98d
2016-06-24Bug fix in Gudhi 1.3.0 documentation - Alpha_complex_from_off.cpp and ↵vrouvrea
Alpha_complex_from_points.cpp requires CGAL >= 4.7 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1346 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e6f0966710d6b07f629490d4b6068d087777488f
2016-06-16Merge FindTBB patch for cmake.vrouvrea
GMP and GMPXX are required only for multi field persistence. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1307 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 56a66e166a07b9eb22ec0d8d05ec66bb5162da5b
2016-06-16Try with 1307 points on a torevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1306 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 82c15cf0810c287c1d8728c13e7fcc1e75f98af6
2016-06-16Make a simplier test for Contraction as it is too long under Windowsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1305 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8269c97d1be121be164afe0c8720863541b5799e
2016-06-16Remove GMP and GMPXX required for all persistence examples. Only for ↵vrouvrea
Multi-field. Update doc. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1303 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5ade88a9525f04ac45e2ddd65881da1771954ef6
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