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2020-04-20Merge pull request #265 from mglisse/dtmMarc Glisse
DTM
2020-04-20Explicitly pass sort_results=True on some testsMarc Glisse
2020-04-20Reintroduce _proj_on_diag, with a unit testMarc Glisse
2020-04-20Add __license__Marc Glisse
2020-04-19Drop redundant testMarc Glisse
torch.isnan(None) raises an exception anyway
2020-04-17Simplify distance-to-diagonal in WassersteinMarc Glisse
2020-04-17Merge remote-tracking branch 'origin/master' into filtrationMarc Glisse
2020-04-16Merge pull request #260 from VincentRouvreau/alpha_complex_improvementVincent Rouvreau
merge https://github.com/mglisse/gudhi-devel/tree/alpha-cache
2020-04-16Fix doc of Simplex_tree about keysMarc Glisse
2020-04-16Update the concept of the simplicial complexMarc Glisse
We use the key now. It wouldn't be hard to use an unordered_map, but since we usually have an unused field key...
2020-04-14Check that the gradient is not NaNMarc Glisse
This can easily happen with pytorch, and there is special code to avoid it.
2020-04-14Merge remote-tracking branch 'origin/master' into dtmMarc Glisse
2020-04-14Doc improvementsMarc Glisse
2020-04-14EagerPy in cmakeMarc Glisse
2020-04-14More testingMarc Glisse
2020-04-13Tweak to detect fit_transformMarc Glisse
2020-04-13Remove left-over codeMarc Glisse
eagerpy is only used with enable_autodiff
2020-04-13Generalize enable_autodiff to more implementationsMarc Glisse
Still limited to L^p
2020-04-13Fix NaN gradient with pytorchMarc Glisse
2020-04-13Small autodiff tweaksMarc Glisse
2020-04-13enable_autodiff with keopsMarc Glisse
This doesn't seem like the best way to handle it, we may want to handle it like a wrapper that gets the indices from knn (whatever backend) and then computes the distances.
2020-04-12Parallelize the "precomputed" case of knnMarc Glisse
It is supposed to be possible to compile numpy with openmp, but it looks like it isn't done in any of the usual packages. It may be possible to refactor that code so there is less redundancy.
2020-04-11Use longer namesMarc Glisse
2020-04-07Document dependencies for building the docMarc Glisse
2020-04-06Remove trailing whitespaceMarc Glisse
2020-04-06Merge remote-tracking branch 'upstream/master' into wbary-theoMarc Glisse
2020-04-04Missing biblio in one file, change title levelMarc Glisse
2020-04-04Revert "sphinx label warnings"Marc Glisse
This reverts commit d9e6b4f51bc8517453653be2904ab6db9aaab85e. It was able to remove the warnings about duplicate labels, but then it shows [WA1] instead of [1] in the generated doc. And for things cited on multiple pages, it uses the same everywhere, so on a single page, you can have a mix of [I1], [WI2], etc. Not very pretty.
2020-04-04sphinx label warningsMarc Glisse
2020-04-04Local bibliographies in sphinxMarc Glisse
2020-04-03removed the print of energy in verbose mode, added by errortlacombe
2020-04-01improved doc, adding double quot for inittlacombe
2020-04-01improved doc readabilitytlacombe
2020-04-01Split the cache per dimensionMarc Glisse
Try to reduce slightly the memory use.
2020-04-01improved doc, turns Basic examples as subsections using *tlacombe
2020-04-01code review: use operator[] instead of at()ROUVREAU Vincent
2020-03-31correction typo user.rsttlacombe
2020-03-31update CMakeLists to make things compatible with wasserstein/ repotlacombe
2020-03-31created wasserstein repotlacombe
2020-03-31changed import to import gudhi.barycenter as barycentertlacombe
2020-03-31micro modif changed a word to avoid repetitiontlacombe
2020-03-31merged mastertlacombe
2020-03-31changed into import .barycenter for local import in wasserstein, and ↵tlacombe
modified index to remove barycenter doc
2020-03-31removed unused importtlacombe
2020-03-31modified import in test to get consistent with gudhi.wasserstein.barycentertlacombe
2020-03-31added import barycenter on top of the file so that we can call for ↵tlacombe
gudhi.wasserstein.barycenter
2020-03-31removed barycenters specific doc files as those are included in wasserstein ↵tlacombe
distance now
2020-03-31merged doc from barycenters to wasserstein distancetlacombe
2020-03-30Streamline initialize_filtrationMarc Glisse
2020-03-30Merge pull request #215 from MathieuCarriere/extended_persistenceMarc Glisse
Extended persistence
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