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2016-06-20Add testcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1316 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a597203ec80289750b8faa2d6e5293211125dd3c
2016-06-20Renamed the two landmarking functionsskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1314 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5025e0aff02306d61fa809eac10b7db27947b120
2016-06-17Fix return typecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1311 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 33798172ecb1d19bcb080cd6b6a38102ac975304
2016-06-17Merge latest trunk changescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1310 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5fd5cd61cce1cec90a81bbbe98e8f6e3324ea029
2016-06-16Merge FindTBB patch for cmake.vrouvrea
GMP and GMPXX are required only for multi field persistence. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1307 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 56a66e166a07b9eb22ec0d8d05ec66bb5162da5b
2016-06-16Try with 1307 points on a torevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1306 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 82c15cf0810c287c1d8728c13e7fcc1e75f98af6
2016-06-16Make a simplier test for Contraction as it is too long under Windowsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1305 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8269c97d1be121be164afe0c8720863541b5799e
2016-06-16Remove GMP and GMPXX required for all persistence examples. Only for ↵vrouvrea
Multi-field. Update doc. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1303 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5ade88a9525f04ac45e2ddd65881da1771954ef6
2016-06-16gmpxx is required only for Multi-field persistence examplesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1302 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 567bf69e3efba23f065d296c2b3d69578c377be3
2016-06-16Fix find TBB package for msvc 2015vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1301 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a76105ff52729d8170eb88f5a5cbbce06b65b0ad
2016-06-16Fix after code reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1299 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2c58cbcd94f72930f8516121f47cace95a84511c
2016-06-15Added the forgotten Construct_closest_landmark_table.hskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1280 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9ec56f3a9da0fc63a96fb9f7075bc533bfd18393
2016-06-10Useless typenamecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1271 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dcc10421c0e2ce26abbfa93176c62d6c834bb5d3
2016-06-10Use TBB_LIBRARIES instead of TBB_RELEASE_LIBRARY + missing boost dependencycjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1269 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d39ecf562678c53f960467e7cb14eeaff4b938c4
2016-06-08periodic_alpha_complex_3d_persistence modification for is_cuboid_3 to be ↵vrouvrea
customized through a file. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1261 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9862a35dcdfc0dbf0eff01375ea716f094833127
2016-06-02Changed the examples in witness complex packageskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1239 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1ab3b8e4b99d52e749fe5ec67d41283be4258e81
2016-06-02Deleted Landmark choices from witness complex, modified the testskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1238 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f3072037b5e931a4e8fcfeadaae3499074377f01
2016-06-01Clean-upcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1237 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6d60dce225c8705c8f441ec454c425f663a899d8
2016-05-31Farthest points (from Siargey)cjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1230 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3093bfd41948fecf5f6ccb2d1d77546c12e628f4
2016-05-31Fix identationcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1229 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 90afa5dc86416baa5716cdbd7157f96149165dc0
2016-05-30Missing documentation for parameters.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1220 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 190cfccdca4d4fd15066ad04885d5dc19428d59c
2016-05-30cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1219 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 81a6208f769c5237d4f81bc97fc1f3d581e733be
2016-05-26Add doc, examples and unitary testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1213 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dc7980ef3f1baef17f2e42770da146d6c961e672
2016-05-26Betti number fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1207 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5dacf1565eee2fe83781b0bdfb05898ffa36fe66
2016-05-24get_persistence and Betti numbersvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1190 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6da18e680111a9a1ad7753779a94a1e8ce49702c
2016-05-19Seperate doc from code in Persistent_cohomology module.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/get_persistence@1184 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 90b406b11cfa6356243bb4e881c8c7db06f14d6e
2016-05-13Add sparsify_point_setcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1176 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 21e3b8d9ef41a750436fff3b8b077399cfd3e48b
2016-05-11Fix constructors namecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1170 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9f427883eab193b0f03f2bf63d0663a9c52f295e
2016-05-11Add Spatial_tree_data_structurecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1168 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8849698237c375d68d37dbe36f97b7b5252f5ff8
2016-05-11Create 2 new packages: Subsampling & Spatial_searchingcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1167 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e7053d379e936bb6c3f82bd323837285decba5d2
2016-05-10Clock.h requires Boost.Date_timecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1159 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 536869c84e7ced010376bc7c8a7d9608764e7247
2016-05-10Missing "include(${TBB_USE_FILE})"cjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1158 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 61e131f64d4abcf238c24da563fe58703e450346
2016-04-16Less CRLF line endings.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1135 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 83328005a983668b00961f069672e97493e42a34
2016-04-16Minor tweaks to alpha-complexglisse
* use the dimension of the kernel for the TDS * recycle a vector git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1134 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 590f625287629dd041afd5ce479c99b48a476b64
2016-04-15rename parallel_rips_persistence in rips_persistence_via_boundary_matrixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1129 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5c8b71aeb701a181381bf8d628ed65f1d7e214df
2016-04-15Merge of periodic_alpha_complex_3d_persistence fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1128 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 90dabd086a0c5be05ac4eea9b4b58729288b1315
2016-04-15Filtration values are alpha square values for periodic_alpha_complex_3dvrouvrea
Mention it in README git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_alpha_complex_3d@1127 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6085fc3e79db765c041a06d6d05dd3d28685f7bd
2016-04-15periodic_alpha_complex_3d_persistence.cpp bug fixvrouvrea
README values in consequence git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1126 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ce435789e89e1cefe1023a6d73b8606989fca3ba
2016-04-15Periodic bug fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_alpha_complex_3d@1125 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2540ab0edd3f26219bbc3cbd7068e7f5a043f7c2
2016-04-15example result file forgottenvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1124 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0633f46fc110ac757d3eeaeb4979d67f4726a642
2016-04-15example result forgottenvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_alpha_complex_3d@1123 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0678c13104b203e2a329c44aa6db04e9283f4580
2016-04-15Doc bug fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1122 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc0c6e2065540b300e012a4e39b33b5eda4e5318
2016-04-15Doc bug fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_alpha_complex_3d@1121 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 48bb0bb605dfdb9c20bcf5d8de049aef6caf15a5
2016-04-15Add of debian package constructorvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1120 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 21a3e45155cf66e8e585d4fd61f2f29ca18e67cd
2016-04-15Merge of periodic_alpha_complex_3d_persistence featurevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1119 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2a77050d737aa008a1bd0c71a4e4c8eb21c7fef6
2016-04-14fix example test runvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_alpha_complex_3d@1118 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ee8dbd1e8e0dcc902076a80c7c42dc0327adb95e
2016-04-14Fix example tests issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_alpha_complex_3d@1117 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 36c8755fdc317d788118af3871d1073f8a22c8a1
2016-04-14Add of src/common/include/gudhi/Points_3D_off_io.h to read specific 3D OFF ↵vrouvrea
Files for CGAL Point_3 Add an example to read 3D OFF Files for CGAL Point_3 Modify alpha_complex_3d_persistence.cpp to read OFF files Add periodic_alpha_complex_3d_persistence.cpp in Persistent_cohomology examples Add info about new examples in README git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_alpha_complex_3d@1116 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6b423b598869a0f4f9c62d93c93b69efd93c0161
2016-04-14Remove debug traces for TBB fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1115 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ec74747e3c30dfccf67e0e39e82aa407f3287d7
2016-04-08Merge from trunk.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/debian@1112 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 82a43e89115f09449d4f31ebfd9ff56170d8771f
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