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2017-04-13Add radius searchcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Spatial_searching-Add_radius_search@2341 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c30c32b27b8c3c1c8dd65e45d2bdd49738794062
2017-04-12Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2334 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9461830172c72a205520ae197656c480b1cfcaaf
2017-04-11Fix line length cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2333 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 23035b47dd95c008feb546d7ffb17b96cd7edcfa
2017-04-11Fix some #include ""vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2332 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2c15320d156c2b928e9eb664a2afed8fa9809e7e
2017-04-11Move Euclidean_distance in Gudhi namespacevrouvrea
Fix cpplints git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2331 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bc5609c2df490db50e82b56a5e6d899dc6370182
2017-04-10Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2329 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ba0fbf37ea8108d8c3ca21162d7cb815a92336f7
2017-04-10Fix and rename test farthestvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2328 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f1761bf66bcf6d45f72a051fa9a62c4699e3999d
2017-04-10Typo fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2326 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7c88a0635bdeffc643127106574501ce72645546
2017-04-10mac osx version is 10.12 and not 10.9 (cf. mail Bertrand Michel)vrouvrea
Add text for Windows Python 3.X installation and forinstallation with several Python installed on the system. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2324 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 939d5d4a94c2430de11b3dcbc29a65aad4bfd885
2017-04-07Clarify doc about Squared_distance_d in Subsampling.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2315 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5559e1c426569fba1dd4cd350a8697ab7e3260f1
2017-04-05Use an unordered_set for unmatched_in_u instead of an open-coded flat_set.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2312 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 37137a43f781e4646c4149d9528a6a95e1c642be
2017-04-05In Kd_tree::remove, test the point index instead of the coordinates.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2311 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e8d50867d77eea455c34dc5a89ed9e0f45fbeeb7
2017-04-01remove bad named *_tree() functionsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2300 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 512403fe0838fb2691e0af94c55772bff942b740
2017-03-31Bad choose of exact / approx computationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2293 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ba263cefcc0a76d223e4fba7f21ed96a525d16e
2017-03-31PR : Typo in installation docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2292 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9b048844ac0bd0a7e4485b24b06d7a11ce9f9274
2017-03-31Typo with Perseus-style filevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2291 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d76201ecfd7a1f236a04243fe86ca4eb0c21d8b1
2017-03-31Typo in docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2290 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f71b21674190c3b4c6e472f49680de2ca211cf7c
2017-03-31Fix examples testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2289 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9d386b82c89601da233f7c61254a023ddffc9abc
2017-03-30Move example tests in a new CMakeLists.txtvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2288 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8b2bce4c8be8a34b8fba9c664d2f0b3b60a50c20
2017-03-29Small modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2286 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 34dc48a00ed8270967952b8763006b17f96a13e7
2017-03-29Small modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2285 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4bf077b4d3b729c4d133e242d57d08ed9a04ae76
2017-03-29Declare the Kd_tree directly.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2282 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c017cc9368a167fe99b5004636bcbe8734266d3a
2017-03-28Add commentvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2277 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2df390d8a87130a01fd3cae151e5a057ab85e049
2017-03-28Use only insert (simplex and subfaces)vrouvrea
Remove useless initialize_filtration git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2276 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: eed1a67e2f83e3a1945cc24b11454ed1ef024ba6
2017-03-28Missing a testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2274 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 30330428b0071967367d1708338de0c7d40d8a67
2017-03-28Missing a test for cythonvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2272 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 223961ca5575e07d0db2c93ee0326864166980d8
2017-03-28Longer commentsglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2270 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa5f87490ae2b94cbe6b4789001b0075f8a4726a
2017-03-28Make Python interface compile, test and doc for Python2 and Python3vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2267 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f7397ecc5aba27ad4ecc794f4fbf5ca857847113
2017-03-28Different strategies to remove points from unmatched_in_u.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2266 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5ff3d02d50ed3f1be537070d2c840f7ba4c6b433
2017-03-28Replace list with vector, save 30% of the running time...glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2265 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 92ba2895af0715166924abdc1600f20665c76af4
2017-03-28Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2263 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9b430e79ecc94bee975d748eb3e2106c7dbab3ce
2017-03-28Replace some lists with vectors.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2261 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 05dc215157f2a91c0d2150def3392e54af58ad21
2017-03-27Avoid copying Persistence_graph at the same time as Graph_matching.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2255 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c3e494295aabd3647bf37e69f18c8537c5f04910
2017-03-27Use any neighbor near enough, not necessarily the closest.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2254 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2b6776b10bbf565799a16472da4c35c72e63bb9c
2017-03-27Rename random_first_landmark to random_starting_point.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2250 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 953403f208094ca4145d837f736bfc939efa9223
2017-03-26Remove overload of choose_n_farthest_points.glisse
Use a named constant instead of -1 to denote a random value. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2245 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 166dff85c74ab2c13bfd788f226d1d8a15d1d1b9
2017-03-26merge from trunkglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2244 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d261d59dae839dd5de8f6a03c5a167d015f7d85
2017-03-24Merge cgal_4.8_issue branch into the trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2242 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 094b70b4141e7456651263b1619240aff6a5d562
2017-03-24Workaround for CGAL version 4.8 compilation issuevrouvrea
New target CGAL_WITH_EIGEN3_VERSION set with CGAL_VERSION when CGAL and Eigen3 found to ease CMakeLists.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.8_issue@2241 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2fbf1f9397aa1549ba05aa26ac6852b882dce147
2017-03-24Factorize third party management and extract them from CMakeLists.txtvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.8_issue@2239 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6ed246b649418a623919b8b337ce366f5cc1d27f
2017-03-24cpplint fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2238 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 79b012972d91ce734cb3b11300ecf2e97eb2ea66
2017-03-24cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2237 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e320827b0f22160d6645f9ac89d7d7790964cf00
2017-03-24cpplint fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2236 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d3680e5085b858b2d5930179ca345f708688cbae
2017-03-24cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2233 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e82750380435d5f3e2972a65c5322ce268e4b559
2017-03-24cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2232 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ac02d5dd3b2aedd4795f775c228fe5ef7e1b3320
2017-03-24Merge rollback of bad warning fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2231 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6911213e51f96f4ae2319e8bec9b15140ba707ef
2017-03-24Fix cpplint on cython interfacesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2229 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 41a958b1be51ac938b45b384cde7940a85e9dea0
2017-03-23Rollback modifvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bad_warning_removal_rollback@2227 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5bd3fda973c28dfb5567abbd9cf23d9d4dc653b5
2017-03-23Merge ST_cythonize branch into the trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2225 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 013d700aaa4b255cc91ff79020b40b7e6c4e7d05
2017-03-22Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2224 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 822ae367f4384a181f96498dfb4f354c433337ca
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