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2016-10-03Rephrase the alpha complex data structurevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1604 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b9d99909027944d2a98096830646bda36b18ec9b
2016-09-30Fix compilation issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1596 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 343308ef914e6a6617890f49a55eb0bb8db15ee9
2016-09-30New name for qglviewer on Debian.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1594 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: adcfb859f07edcc68442bda54a8b26997ba1498c
2016-09-29Fix doxygenvrouvrea
Add tests git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1589 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3b03e969f43f4f41c7bca1b2de96a71688475742
2016-09-29rename filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1588 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1d94b1a511d11cdb824bc3f4fbe58f365bb772bf
2016-09-29New example and texts for docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1587 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 332335f6f101f08e246b35de6e3a84c2348fd4ee
2016-09-28Unused typedefcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1584 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1b8fa44e98da75619a411c1d6058ccebff9ac350
2016-09-28Add rips complex module and first modification stepvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1577 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc949570c6cffa4756f84a15c41fadc8c45b2af2
2016-09-23Examples shall use only off filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/off_files_only@1555 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 73833d163f3b76604a5111dc4374b635d60afade
2016-09-23Merge last trunk modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1552 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 59c20e186712d2b83c03c26f6f37077ac5f42e46
2016-09-23Fix doxygen warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1551 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 309e1612aa82a9aac11e160be6f89abbd751fd1c
2016-09-23Fix doxygen warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1550 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 39ef2513b5d84cb392677ba10718f5e47734884c
2016-09-23Fix cpplintsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1548 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b8d7d5b4bde8aeec92d6bfc79b8c146c551317c0
2016-09-23Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1547 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a28fa4cae05c17b94d3737697e39cdf1e970d03e
2016-09-23Modify the Alpha complex doc wit a concept to create a simplicial complex ↵vrouvrea
from alpha complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1546 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d8083c3b0e03e1cf0033e5c7c1ba6f95618efdc1
2016-09-22Fix a bug on gcc 4.2.1vrouvrea
reference to non-static member function must be called git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1544 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c5fdb03806241da2d7b0a92b73deb36791f74320
2016-09-22Fix typocjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1542 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b09cd3fd1ea7940d8787b0d9cd23d4d7e69d0925
2016-09-22Clean-up CMakeLists.txtcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1541 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3204fef66b8a8358820531f8d6d2494c96a7226e
2016-09-22New template function create_complex for Alpha_complex to create the ↵vrouvrea
simplicial complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1540 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 24e53dc58d158166b976dd09760ad0e2acaf8e36
2016-09-22Spatial_tree_data_structure => Kd_tree_searchcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1538 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 095b038d0e4c1c6d78e9aa9efe73447b65dab2b1
2016-09-22Require CGAL 4.8.1 (furthest neighbor is bugged before)cjamin
See https://github.com/CGAL/cgal/pull/1105 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1536 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc980f30c107b39f8a47e18deb23820b411a9201
2016-09-22Require CGAL 4.8.1 (furthest neighbor is bugged before)cjamin
See https://github.com/CGAL/cgal/pull/1105 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1535 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: da97775398bd24c7c1bd431686abd66cdf24005b
2016-09-21Modify test that is not working under Windowsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1525 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0f9eca7c8a11b7578fe9cb5acf3097e704288c2d
2016-09-21Add packages in GUDHI_MODULEScjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1522 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa1d4b4f1e0f6c437817e7bf6453d9fb1ca09df6
2016-09-21Merge from trunkcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1520 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 477d84d9b29057de29afbb77d830d9d46a8f54be
2016-09-20Fix CMakeListscjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1519 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a4a5956802d6c22370367180a2ab70aaff3d3cf9
2016-09-20Use boost::iterator_property_map instead of the pointer trickcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1518 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c1a1fc717ef32087617cff6f8bfa73836365b481
2016-09-20Changed the name of farthest point in intro docskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1517 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 83ad658d6fa02e8a1524bf0f363c8bac522c9406
2016-09-20Renamed pick_random_points -> pick_n_random_pointsskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1516 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 45cc8cca9debf56dd0d21762e537649dd92d9a4d
2016-09-20Changed the names of files as wellskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1514 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: df3b82dc1d07b5d51b1c1bed4b5abd823129d4a8
2016-09-20Changed choose_by_farthest_point -> choose_n_farthest_pointsskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1513 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 287ef6f3be6e4db4616ad92ff7369cd7722a1f2d
2016-09-19Merge of warning_fix branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1512 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8fd75ab3cb6a02013df18f6d5048755d39524b70
2016-09-19use of std::vector for unitary test instead of CGAL points typevrouvrea
rename unitary test as stands in convention git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1511 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b768b5a6bb0fe823abe6cbbea28d49c7ecb39a9d
2016-09-19Rename off file reader as stands in convention.vrouvrea
Add an example with a vector of double for point type. Fix SO3 OFF files accordingly to OFF file standard. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1510 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff61bed1f1895bc5bf1af4ae946e2a84a692c390
2016-09-19Don't know why this test fails on win64 : assertion failed vector iterator ↵vrouvrea
not incrementable Workaround git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1509 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4e29928ca7198b9c98aee8d961900910d51cd5f3
2016-09-16No more need of Test.hvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1508 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a0436136ab366116b61d0630a3da2b6407291db9
2016-09-16Rename tests according to conventions.vrouvrea
Add xml UT generation for the Boost tests git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1507 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 17a39f49058182586307f13511f78201ef2615dd
2016-09-16Rewrite tests wit BOOST testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1506 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5afe034e18381c4921987457fd75f15c21b3aed1
2016-09-15remove concept dir for Contraction (empty)vrouvrea
remove unused using namespace git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1505 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32785bb7a8062d828069f22b0d410afa3e57f702
2016-09-15fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1504 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b0036e77dafec3301dd9f130265e1513a82cddf4
2016-09-15Fix cpplint warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1503 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b4e1ec1b6cc95a6a7207e68fb31e064c0e3bd065
2016-09-15Fix cpplint and warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1502 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: afc7d137b66225954ebfe37a823f1f0b6bcfe7a5
2016-09-14Fix construction of pointscjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1496 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 19a074947a803f359af2be2026d9c4135743fb49
2016-09-14-Wsign-compare is included into -Wallvrouvrea
-pedantic is recognized by icpc (and also gcc and clang) unlike -Wpedantic git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1494 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6ad63e46a4e077bc4e16852eb0cb443db7c5197d
2016-09-12Gudhi 1.3.1 in Doxyfilevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1490 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f5a84ac81c1bac977c8bbf4551e0ab626b64fece
2016-09-12Intro_simplex_tree.h for filtered complexes module documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1488 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b9dfa3d056b4216efe02c8cb0323bdd8805b2756
2016-09-12Modify filtered complexes sections and examples.vrouvrea
Modify persistence sections and examples git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1487 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6b0bdc7199f7229ac152175c4cbc6ebd79c9bc67
2016-09-09isnan must be preceeded by std::vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1486 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94adb015da0957f3b4ce3f5742f9cb0cf57b6284
2016-09-09Add a comment for assert that explains null_key mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1484 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 12246383db2c71ce36d03e5702180605459e6fe3
2016-09-09Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1483 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1eafe2e93f1fc3a2780d9452aae1981481786f95
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