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2016-03-17Merge from trunk.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@1050 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1a32dd3528c771a78d5749ac2c04503a3d979fe4
2016-03-17cleanning up the stuff with iterators in Bitmap_cubical_complex_base.h class. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@1049 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9630d6df6a2ecdb51ab25150454a563cd928b09a
2016-03-14Answers to Marc's comments.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@1042 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 481841d609bae68df85a93527e6d3cc20f1b06e2
2016-02-15typoglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@1022 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d6068c0b757949d2e404ba99812ae7a0b8a8908d
2016-02-13removing phat relaed compontns. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@1021 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d0c9c23ca3f3a5b2131179949ba80659b13f7777
2016-02-09Finally, let CGAL set the flags, but before setting CXX_FLAGS with "-std=c++11"vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1011 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: faeca77f4eebf969e608b0c3be67893d646845a9
2016-02-09Adding documentation to the bitmap cubical complex with periodic boundary ↵pdlotko
conditions class. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@1010 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e1d9516f57be5e824203037b74998ed897741261
2016-02-09Doxygen fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@1009 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 490dcfd0ca24df97b9bf7735fa167ef844d49b71
2016-02-09adding missing partsypdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@1008 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f6de1ee4317763b50233f9a7212bdbf6587ee686
2016-02-08Adding changes suggested by Marc. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@1007 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2462c084e3269a3d44813619f44852d3c8d6e163
2016-02-05Merge of last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1005 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fd102773dade2672c47e27892782e7b29330f112
2016-02-05Over here I have linkd phat with Gudhi. So far it is done only for cubical ↵pdlotko
complexes, but since I am ONLY using Filtration_simplex_iterator, there should be no problem to have it run with any other class we have. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@1004 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ddb3e2c5fa0c2a816e7435c57d32c0644f8163d2
2016-02-04CMake strategy modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1003 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c917934525e020b54b2f4506b5c9d060a28c9d89
2016-02-04requires boost alsovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1001 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aca5ee1d5587d2e613691a539bb166ac592c137c
2016-02-04test with include CGAL_USE_FILE to fix windows issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1000 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 11a5fb78933306cfc83951174b38a03837fef58a
2016-02-03Merge of AddressSanitizer bug fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@996 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 20e4b949af8e4481c13e8a91181fe772c696f01a
2016-01-31remove creation of useless visitor for test that were just used for displaysalinasd
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_insert_with_subfaces_fix@990 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 13b3baec7f449d1d74cfaca2211571b468be1486
2016-01-19rollbackvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@978 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6aeb45f999861185cda0d0961f22b4a08b413927
2016-01-19Try different values for xUnitvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@977 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b3e39a4858a4be139236be0a87619164a35ea7c0
2016-01-14AddressSanitizer bug fixes on Simplex tree copy constructor.vrouvrea
debug_tree function git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_insert_with_subfaces_fix@967 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dd4b15dc8f2a4795d3a0b6fdcf4938aff152906b
2016-01-13Adding documentation of the class.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@963 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6eec3b7216880475ed667660275c2314bf0feb0c
2016-01-13Added tests for periodic boubnadry oconditions bitmap. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@962 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 49f059cdf9e0c8e20ff727564da13be14ebc2c04
2016-01-13First version of a code changed so that it computes persistence of cubical ↵pdlotko
complexes with or without periodic boundary conditions, but do not require duplication of code that link it to Gudhi persistence engine. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@961 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 506db0edd18818287fe110dcd04c15e369b28171
2016-01-08cpplint and cppcheck fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@956 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f54c0a2a375e8818c7162aec05249e446361834b
2016-01-08Adding a first vesion of a functionality that provide periodic boundary ↵pdlotko
codnitions. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@955 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae60d98a6b2c15c2f7152663c3b05d40f0a56e86
2016-01-08tbb branch merge. Link with Intel TBB for parallel programmation.vrouvrea
Reduce persistence UT timings. Add parallel_rips_persistence compilatino and test. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@954 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4623c6a0c31d2b9574e2bb33836261fc26a89555
2016-01-07Backmerge from trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb@953 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 06624ae4ed4031c7bae56e0b8fa305a318b934bc
2016-01-07TBB find package mechanism with definition for code purpose.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb@952 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9b4dcb962d1af208feccf831171029479d37831e
2016-01-07Cppcheck fixes after mergevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@951 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4b66d24e46b604e2066c4c2e506b147af4be7e6a
2016-01-07Backmerge of trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/contiguous_vertices@949 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b20b49bab38fdcbc6571c159200125148e9a1bd6
2015-12-27COrrestions suggested by Marc just before Chrismas. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@948 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b5391c6584d8042646fea5ca17e250fcfc3dd85f
2015-12-22Changes according to Marc's comments from 18 December. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@947 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3afdd0423f3b36d8103360ef11fbb5f1c9a348a5
2015-12-15Don't use boost::tuple.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@946 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3988b09fafda67297cac8bd68629310cdfdc607e
2015-12-11Removed pdf to use pngvrouvrea
Biblio issue git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@944 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 68e93aa53ebadcde4b44eec881b72080e6ceaa70
2015-12-11Pictures in png formatpdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@943 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 470f82a103e17ffbda2b784fa829e5b0b11458e6
2015-12-11Adding corecntions suggested by the Editorial Board to the ↵pdlotko
Bitmap_cubical_complex class. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@942 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 81338409d0c6dc3435474f08f499dd5b72812ad6
2015-12-11Clarify the semantics of FilteredComplex::simplex(key).glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@941 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a2cb908a642ef53c5de25ba5113e03bb45652b9b
2015-12-10Forgot UseTBB.cmakecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb@940 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bf6c4d9a54798895a34b89d655f7817534feb8b5
2015-12-10Add cmake script to find TBBcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb@939 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4caa2f3a1362b07219b7e7e7ca0d059cd73bdac0
2015-11-27Adding changes to the cubcial complex class according to Marc and Vincent's ↵pdlotko
comments. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@930 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cb9134a5c18fae3e2e63bbaf8329dd168d08d3b3
2015-11-20Bug on gudhi installation doc pagevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@928 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7fb83a82e11210bce9842a80779455681d6508f3
2015-11-16Backmerge of skb_simplex_insertion_merge development (Visual 2013 ↵vrouvrea
compilation fix) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@926 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 02af27259b14bb6d779567041adce67619c41dac
2015-11-16backmerge of skb_simplex_insertion_mergedevelopmentvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@925 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 923de101fab769e597e39975a89f8e59d00e2cce
2015-11-16Visual 2013 fix about typename not allowed.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/skb_simplex_insertion_merge@924 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 641ead33dd7c9a97dd84e085e2d131d05c6ce8fb
2015-11-16cpplint fixes before mergevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/skb_simplex_insertion_merge@923 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: de9fc0770d273730de876a6ed54646847362bc7d
2015-11-15Fix for older libstdc++.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@922 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d370bbf81488ef6b07a17d63ad43ba2b813e2210
2015-11-14skbl: correct typo in test and small renamingssalinasd
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/skb_simplex_insertion_merge@918 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 543ae94051051e1a79f95192db24fcd411dbea28
2015-11-13Reintegrate branch annotations_in_boundary.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@916 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4dc69dee0f4417a7fe6b0544bb5fe561466f54db
2015-11-13Unobfuscate a multiplication.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@915 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 771fd96e47209ceee8ffa05519134f0c8069b1cf
2015-11-13Using a static variable really helps.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/annotations_in_boundary@914 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 695a6f642399c2646e5a26fac20173fbd57fe160
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