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2018-05-15Seems to be fixed.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_v3_vincent@3446 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 01f10ae61484982dc99fd67573d9ca61ffbbec0a
2018-05-15CMake minimal version is now 3.1vrouvrea
Compilation flags are now externalized in cmake/modules Add NO_POLICY_SCOPE for GUDHI_third_parties to fix warnings Try to fix CGAL 4.12 that is no more setting CGAL_LIBRARIES git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_v3_vincent@3445 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0ac7613f016e28cc634606f76e85ecaf5bacb2d4
2018-05-14Fix CGAL 4.12 build errors - include missingvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3435 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 59e1e78f26032154a8b81146b0f4d5b4ecead992
2018-05-02Add Python Simplex_tree make_filtration_non_decreasing interface and its testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3409 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6a3af66b3d90c6114886e54c5c34287a13f4b863
2018-04-27Remove show_palette_valuesvrouvrea
Add legend flag to display the legend Set rips threshold to 0.3 for users not to be surprised when playing with threshold git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3406 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 03999711eafb81748a82b5725482a9f0d4307861
2018-04-27persistence_graphical_tools documentation clarificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3405 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5b38ba745e20585c35263e2880b8511299e11129
2018-04-27Code and doc review with IFPEN :vrouvrea
plot_*: c'est quoi ce paramètre alpha ? band_boot: Renommer en 'band', sans référence au bootstrap. Ne pas l'utiliser dans la majorité des exemples / tutos. max_plots: mettre une valeur par défaut, pour éviter qu'on se retrouve trop facilement coincé à attendre 1h qu'il affiche des points. Éventuellement afficher un message indiquant que certains points n'ont pas été affichés et comment changer ça. barcode: trier les barres par date de naissance (le faire tout le temps ou avoir une option et le faire par défaut). git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3404 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cfa775e425fbf12da1758d601ccbd80a2c7d3bc9
2018-04-27Merge Copyright clarificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3402 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c24c2226a76df7a6a95d2531e98850c7c19580e1
2018-04-26Fix Copyrightsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/copyright_clarification_vincent@3400 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff348beedf92656c6913c2a1df983b5804b33988
2018-04-25Doc review: Fix identation problems in cover complex reference manualvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3394 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 09d2f6371a73ebb0a93f03a33bc1103f254b0bcf
2018-04-25persistence_pairs Python versionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3393 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5ee633545ca5754b605cdd789ca9720f5936998a
2018-04-24Fix Python tangential complex versionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3392 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f0d9e008229a6cd7868f4afd11eaf3c566e81adf
2018-04-12Add a CMake option in order to use TBB or not. Default is ONvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3375 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fbe41ee9e7771095e34b6c12adbacddf9484f1b1
2018-04-10Doc review : Gudhi::Proximity_graph and Gudhi::Radius_distance must be links ↵vrouvrea
in the doc git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3370 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc57faf137316ae07e06491482e0756fbacaf479
2018-04-10Doc review : Add explanation when to use Alpha or Cech.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3369 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4b6cf58478a7dbe1825491681507d4304d8f3584
2018-04-10Change tparam doc from Chech_complex_blockervrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3367 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 717baf604d7c639eabed28f4ad5639c4eac15dc1
2018-04-10Code review : Cech_blocker was hardcoding doublevrouvrea
replace point_iterator function in a get_point const function that returns a Point InputPointRange description Cech blocker is now templated with Cech complex, which is no more included. Deep copy of the point cloud on Cech complex ctor git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3365 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 93e3cf3fe61290b88a0714b9e55ad80e01a34f36
2018-04-10Doc review : Separate global definition and a new section algorithm.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3360 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 88289d011e416c3b3d66faffbcaa3e07b910314c
2018-04-09Code review : Rename ForwardPointIterator with InputPointRangevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3358 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6f90e228c4c546b28b9fe610e5f59bbab047cd27
2018-04-09Add an algorithm sectionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3357 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 17324da3ced1ff07a46b1c0d2abe782b5e706279
2018-04-09Doc review : Fix links to Gudhi::Minimal_enclosing_ball_radiusvrouvrea
Improve the doc git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3356 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 886022b4addfe0b0993fbe2675adb527a0f57700
2018-04-09Doc review: Fix main page cech complex explainationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3354 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0871ae5a851c40e880625a08f470277f93476864
2018-04-09Add Miniball file changes for Gudhi requirements inside Miniball.READMEvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3353 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 099bc9ed544e5a81a5dc3a8dea3ce93afbfef82b
2018-04-09Fix deprecated CGAL random functionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3352 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dcd5eadc420575b1de91acd80328c6026bef7e0a
2018-04-05Merge last modifications of Nerve_GIC branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3342 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 268968d6b446db88bdaab48bbdb5c91882d4a820
2018-04-04No need to repeat title, automatically done by the websitevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3338 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 51d295377d2b3235e9316f199bf95d3c5aeaeab3
2018-04-04Fix max issue on MacOS clangvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3337 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 89cd68f9abd58a43553d9ca2d54e776374557f26
2018-04-04Merge sparse rips branch in trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3336 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 01dcab006197637ccba9c29f8990375fe05ad7b4
2018-04-03Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-glisse@3335 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 41b78dbadb13e3eca889479c1112814b2b58f679
2018-04-03Modify the correct signature to operator== and !=vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3333 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 936c6abcb75e16cc569368e45e87feaa409e0890
2018-04-03Try to fix operator< for std::sort on CentOSvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3332 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: caaeb02c38a8adc8c09321e534f9b73181450acf
2018-04-03Add explicit operator< to fix sort bugvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3331 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d1a70cdbae311f1376e24d61568471d81b7f0df1
2018-04-03Merge rips_complex_from_correlation_matrix branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3328 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a0d98d884fc06a6528e3362d6ed627cd964f527a
2018-04-03Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@3327 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 85b28237989b93fb4b5f8629a7f28bdb51b9a1b1
2018-04-03Add warnings for rips persistence from correlation matrix (points under the ↵vrouvrea
diagonal). Use range instead of vector in write_persistence_intervals_to_stream git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@3326 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ea0fdc32c91f1927c5a9f2a3864360895ce8128a
2018-03-29Use add_edge_without_blockers in GudhUI.glisse
When the meaning of add_edge changed, GudhUI was not updated. The old functionality is available as add_edge_without_blockers. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3318 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 58b10f79177736cc99e35fb526e4c987d615ae4c
2018-03-29Use CGAL::NT_converter to convert filtration values.glisse
Alpha_complex may produce something different from what the Simplex_tree expects, convert it explicitly. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3317 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d6c7492bbf48401a9f63f6462c7704e380eff6e1
2018-03-28Merge last Nerve_GIC development from eponym branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3311 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c57e5f6f364b6162f607edd07f3a31577e640fcb
2018-03-28Fix header that was not pointing on the correct web site. Cpp documentation ↵vrouvrea
header was not good git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3310 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 520635bb2f09419b4b70f71c0838d45ae15354b3
2018-03-27No more deep copy of the simplicial complex in the Cech Blocker, just use ↵vrouvrea
the pointer git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3307 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 026cd5491d8e3030fce63beabd6e77bddebb05cc
2018-03-22code review : no more ForwardPointRange copy. Use of a vector instead.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3306 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f848c18595303bfb802998746ee6fe2a308c68df
2018-03-22code review : use std::begin, std::end and boost::sizevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3305 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e59699bc13ae66476001ef5f648759fef68ee76a
2018-03-22code review : Rename Radius_distance Minimal_enclosing_ball_radiusvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3304 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 204aa7a7098773b2d290e35a12a1c92449743d7d
2018-03-22Move Miniball in gudhivrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3302 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 736e5c33a9593e4dfb5b19ddc745ab9852d71b40
2018-03-22Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3301 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 148bef8bb2b7183e9535135b25a6ad369a42f79b
2018-03-20Add python unitary tests for cover complexvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3300 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4152cbeaa7dda37e8bb2dd2fc9f115f3976695bb
2018-03-20Finish the documentation and examplesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3299 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d60f4db274962c1c6aaef3c4ab6787bda8c0640f
2018-03-19Add nerve_gic voronoi partvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3298 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c1cada23c1c492692df8e6764ed5371b494ccea8
2018-03-19Documentation for Nerve_gicvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3297 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3e80b2592386707ac760d0f7cd4bce9d2e9fd7e6
2018-03-18last interfaces header filevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3296 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32e0925e59d3d00e195567aaf5d3696107ce4cdd
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