Age | Commit message (Collapse) | Author | |
---|---|---|---|
2021-02-28 | Behave in line with scikit-learn guidelines | Gard Spreemann | |
According to [1], we should in particular not do any validation in the constructor, and fit/fit_transform should always update underscored attributes (self.grid_ in this case). We still want to allow for a user-defined, data-independent grid, so we make this a separate parameter predefined_grid. [1] https://scikit-learn.org/stable/developers/develop.html | |||
2021-02-28 | Move documentation string to class | Gard Spreemann | |
2020-12-20 | Add tests for BettiCurve2. | Gard Spreemann | |
2020-12-20 | More flexible Betti curve computations. | Gard Spreemann | |
Introduce a new BettiCurve2 class that can compute Betti curves on any grid (not just np.linspace ones), and can compute the grid needed to capture all values of the Betti curves. Based on feedback from PR #427. | |||
2020-12-19 | Docstring improvements in RipsComplex | Umberto Lupo | |
- create_simplex_tree method referred to the Delaunay triangulation instead of the flag complex - "rips" was not capitalized - "double" was used in the docs but only "float" (which has double precision) is a Python type | |||
2020-12-14 | Fix sphinx error on Azure and Appveyor | ROUVREAU Vincent | |
2020-12-14 | Fix sphinx warning and doc identation | ROUVREAU Vincent | |
2020-12-12 | Merge pull request #436 from VincentRouvreau/ci_without_cgal | Vincent Rouvreau | |
Add build and tests wo cgal and eigen and wo cgal | |||
2020-12-11 | code review: else branch | ROUVREAU Vincent | |
2020-12-11 | code review: throw an eception if collapse_edges when no Eigen3 | ROUVREAU Vincent | |
2020-12-11 | code review: GUDHI_USE_EIGEN3 generated by CMake in __init__.py as suggested ↵ | ROUVREAU Vincent | |
and roll back the other solution | |||
2020-12-10 | Merge pull request #409 from mglisse/fardist | Marc Glisse | |
Pass a distance function instead of a kernel to choose_n_farthest_points | |||
2020-12-10 | Merge pull request #408 from mglisse/subsample | Marc Glisse | |
Clean-ups in subsampling | |||
2020-12-10 | Fix memory leak | ROUVREAU Vincent | |
2020-12-09 | Fix #388 | ROUVREAU Vincent | |
2020-12-08 | Fix #388 for the tests to pass | ROUVREAU Vincent | |
2020-12-08 | do not launch test_representation when no pot | ROUVREAU Vincent | |
2020-12-08 | rollback test_representation and a CGAL condition to launch it | ROUVREAU Vincent | |
2020-12-08 | Make representations tests work if CGAL and/or POT is not there | ROUVREAU Vincent | |
2020-11-30 | Fix pykeops 1.4.2 where version is very verbose on 2 lines | ROUVREAU Vincent | |
2020-11-26 | handle old boost | Marc Glisse | |
2020-11-22 | Handle squared radius | Marc Glisse | |
Make it work without a breaking change, we can always make a change later in a separate PR. | |||
2020-11-18 | merge master and resolve conflicts | ROUVREAU Vincent | |
2020-11-13 | Merge pull request #405 from mglisse/botneg | Marc Glisse | |
Bottleneck distance for one point or negative coordinates | |||
2020-11-13 | Test with negative coordinates | Marc Glisse | |
2020-11-10 | Revert change to the example | Marc Glisse | |
It would require updating the figure. | |||
2020-11-09 | Don't test the equality case in sparsify_point_set. sqrt. | Marc Glisse | |
2020-11-09 | Merge remote-tracking branch 'origin/master' into fardist | Marc Glisse | |
and remove example installation | |||
2020-11-09 | static_assert message | Marc Glisse | |
2020-11-08 | Test BettiCurve with infinite value | Marc Glisse | |
+ black reformatting | |||
2020-11-07 | Swap clip with int conversion | Marc Glisse | |
This allows correct handling of infinite values. | |||
2020-11-05 | More numpy in BettiCurve | Marc Glisse | |
suggested by @raphaeltinarrage | |||
2020-11-04 | Merge branch 'master' into weighted_alpha_complex_dD | ROUVREAU Vincent | |
2020-11-04 | Merge pull request #421 from mglisse/pythonfirst | Vincent Rouvreau | |
Build python first | |||
2020-11-04 | import matplotlib only when necessary in examples, in function of args. ↵ | ROUVREAU Vincent | |
Tests are without matplotlib, so no need to test if present | |||
2020-11-04 | Merge pull request #418 from VincentRouvreau/do_not_install_compiled_examples | Vincent Rouvreau | |
Do not install compiled examples | |||
2020-11-04 | Revert "Fix #416 by adding full path to introduction.rst - maybe strange ↵ | ROUVREAU Vincent | |
with conda or pip installation" This reverts commit 2d4c69d698df7e40709ec0e38463b4cf30ee388d. | |||
2020-11-04 | Build python first | Marc Glisse | |
This subdirectory is built sequentially and takes a very long time. Starting it first, in a parallel build, it is still the last to end, but since it started earlier it also ends earlier. Usually I build the plugin directly with python3 setup.py build_ext --inplace -j20 But I don't think there is a natural way to do that from the makefile (except for the unlimited -j), since I doubt setuptools knows how to cooperate with make, ninja, etc to share a pool of workers. | |||
2020-11-03 | Fix #415 by removing all install cmake targets from examples | ROUVREAU Vincent | |
2020-11-03 | Fix #416 by adding full path to introduction.rst - maybe strange with conda ↵ | ROUVREAU Vincent | |
or pip installation | |||
2020-11-03 | Merge branch 'master' into weighted_alpha_complex_dD | ROUVREAU Vincent | |
2020-11-03 | code review: use Marc's trick to test relative error | ROUVREAU Vincent | |
2020-11-03 | code review: use relative error | ROUVREAU Vincent | |
2020-11-03 | doc review: explain briefly test aims | ROUVREAU Vincent | |
2020-11-03 | Add comment in code for get_boundaries if not interested in filtration values | ROUVREAU Vincent | |
2020-11-02 | Merge master and resolve conflicts | ROUVREAU Vincent | |
2020-11-01 | The example does not need CGAL/eigen anymore. | Marc Glisse | |
I had done a search and replace without checking. I don't understand why there are "install" directives for examples... | |||
2020-11-01 | Doc tweaks. | Marc Glisse | |
2020-11-01 | Document that only double is supported. | Marc Glisse | |
2020-10-31 | long line | Marc Glisse | |