From f9b5b9b3306f3f00f5bfa2724cbfa087d5161fcb Mon Sep 17 00:00:00 2001
From: vrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb>
Date: Fri, 11 Dec 2015 15:41:39 +0000
Subject: Commit code and doc review Still issue and lot of logs in
 simplex_tree::prune_above_filtration

git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@945 636b058d-ea47-450e-bf9e-a15bfbe3eedb

Former-commit-id: cd4f60ddcacb0444e0eb3b9323d8042eb49b132e
---
 src/Alpha_complex/doc/Intro_alpha_complex.h        |   8 +-
 src/Alpha_complex/doc/alpha_complex_doc.ipe        |  24 +++---
 src/Alpha_complex/doc/alpha_complex_doc.png        | Bin 46746 -> 49973 bytes
 src/Alpha_complex/doc/alpha_complex_doc_135.ipe    |  88 ++++++++++-----------
 src/Alpha_complex/doc/alpha_complex_doc_135.png    | Bin 127130 -> 80794 bytes
 .../doc/alpha_complex_representation.png           | Bin 0 -> 16737 bytes
 6 files changed, 60 insertions(+), 60 deletions(-)
 create mode 100644 src/Alpha_complex/doc/alpha_complex_representation.png

(limited to 'src/Alpha_complex/doc')

diff --git a/src/Alpha_complex/doc/Intro_alpha_complex.h b/src/Alpha_complex/doc/Intro_alpha_complex.h
index 685a4c2f..12d62ac0 100644
--- a/src/Alpha_complex/doc/Intro_alpha_complex.h
+++ b/src/Alpha_complex/doc/Intro_alpha_complex.h
@@ -37,10 +37,10 @@ namespace alphacomplex {
  * \section definition Definition
  * 
  * Alpha_complex is a <a target="_blank" href="https://en.wikipedia.org/wiki/Simplicial_complex">simplicial complex</a>
- * constructed from each finite cell of a Delaunay Triangulation.
+ * constructed from the finite cells of a Delaunay Triangulation.
  * 
- * The filtration value of each simplex is computed from the alpha square value of the simplex if it is Gabriel or
- * from the alpha value of the simplex coface that makes the simplex not Gabriel.
+ * The filtration value of each simplex is computed from the circumradius of the simplex if it is Gabriel or
+ * from the alpha value of the simplex cofaces that make it not Gabriel.
  * 
  * All simplices that have a filtration value strictly greater than a given alpha square value are not inserted into
  * the simplex.
@@ -78,7 +78,7 @@ namespace alphacomplex {
  * 
  * \subsection datastructure Data structure
  * 
- * In order to build the alpha complex, first, a Simplex tree is build from the cells of a Delaunay Triangulation.
+ * In order to build the alpha complex, first, a Simplex tree is built from the cells of a Delaunay Triangulation.
  * (The filtration value is set to NaN, which stands for unknown value):
  * \image html "alpha_complex_doc.png" "Simplex tree structure construction example"
  *
diff --git a/src/Alpha_complex/doc/alpha_complex_doc.ipe b/src/Alpha_complex/doc/alpha_complex_doc.ipe
index b5601143..e74f9bc4 100644
--- a/src/Alpha_complex/doc/alpha_complex_doc.ipe
+++ b/src/Alpha_complex/doc/alpha_complex_doc.ipe
@@ -1,7 +1,7 @@
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@@ -232,14 +232,7 @@ h
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@@ -434,5 +427,12 @@ h
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diff --git a/src/Alpha_complex/doc/alpha_complex_doc.png b/src/Alpha_complex/doc/alpha_complex_doc.png
index 601ac051..c9eab275 100644
Binary files a/src/Alpha_complex/doc/alpha_complex_doc.png and b/src/Alpha_complex/doc/alpha_complex_doc.png differ
diff --git a/src/Alpha_complex/doc/alpha_complex_doc_135.ipe b/src/Alpha_complex/doc/alpha_complex_doc_135.ipe
index 28b893b8..5d1d29d4 100644
--- a/src/Alpha_complex/doc/alpha_complex_doc_135.ipe
+++ b/src/Alpha_complex/doc/alpha_complex_doc_135.ipe
@@ -1,7 +1,7 @@
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 243.428 591.569 m
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 <text matrix="1 0 0 1 0 80" transformations="translations" pos="212.724 627.389" stroke="darkcyan" type="label" width="18.785" height="4.294" depth="1.49" valign="baseline">$\alpha_{420}$</text>
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@@ -325,7 +310,6 @@ h
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 <text matrix="1 0 0 1 -199.21 -189.117" transformations="translations" pos="380 530" stroke="darkred" type="label" width="168.308" height="8.965" depth="2.99" valign="baseline" size="large">[0,4] is not Gabriel $\rightarrow$ $\alpha_{40} = \alpha_{420}$</text>
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@@ -420,16 +393,6 @@ modified (NaN)
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diff --git a/src/Alpha_complex/doc/alpha_complex_representation.png b/src/Alpha_complex/doc/alpha_complex_representation.png
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