From f0224ea1c97c7dcb32debeda176139ba10bd21e7 Mon Sep 17 00:00:00 2001 From: Marc Glisse Date: Sat, 4 Apr 2020 05:39:19 +0200 Subject: Local bibliographies in sphinx --- src/python/doc/tangential_complex_user.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'src/python/doc/tangential_complex_user.rst') diff --git a/src/python/doc/tangential_complex_user.rst b/src/python/doc/tangential_complex_user.rst index 852cf5b6..0bcbc848 100644 --- a/src/python/doc/tangential_complex_user.rst +++ b/src/python/doc/tangential_complex_user.rst @@ -200,5 +200,5 @@ Bibliography ============ .. bibliography:: ../../biblio/bibliography.bib - :filter: docnames + :filter: docname in docnames :style: unsrt -- cgit v1.2.3 From d9e6b4f51bc8517453653be2904ab6db9aaab85e Mon Sep 17 00:00:00 2001 From: Marc Glisse Date: Sat, 4 Apr 2020 06:01:59 +0200 Subject: sphinx label warnings --- src/python/doc/alpha_complex_user.rst | 1 + src/python/doc/bottleneck_distance_user.rst | 1 + src/python/doc/cubical_complex_user.rst | 1 + src/python/doc/index.rst | 1 + src/python/doc/nerve_gic_complex_user.rst | 1 + src/python/doc/persistent_cohomology_user.rst | 1 + src/python/doc/rips_complex_user.rst | 1 + src/python/doc/simplex_tree_user.rst | 1 + src/python/doc/tangential_complex_user.rst | 1 + src/python/doc/wasserstein_distance_user.rst | 1 + src/python/doc/witness_complex_user.rst | 1 + 11 files changed, 11 insertions(+) (limited to 'src/python/doc/tangential_complex_user.rst') diff --git a/src/python/doc/alpha_complex_user.rst b/src/python/doc/alpha_complex_user.rst index 6e926fc8..e1903688 100644 --- a/src/python/doc/alpha_complex_user.rst +++ b/src/python/doc/alpha_complex_user.rst @@ -209,3 +209,4 @@ CGAL citations .. bibliography:: ../../biblio/how_to_cite_cgal.bib :filter: docname in docnames :style: unsrt + :labelprefix: A diff --git a/src/python/doc/bottleneck_distance_user.rst b/src/python/doc/bottleneck_distance_user.rst index 95c4e575..23a87c19 100644 --- a/src/python/doc/bottleneck_distance_user.rst +++ b/src/python/doc/bottleneck_distance_user.rst @@ -72,3 +72,4 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt + :labelprefix: B diff --git a/src/python/doc/cubical_complex_user.rst b/src/python/doc/cubical_complex_user.rst index 94f59954..cdc5b5dc 100644 --- a/src/python/doc/cubical_complex_user.rst +++ b/src/python/doc/cubical_complex_user.rst @@ -165,3 +165,4 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt + :labelprefix: CC diff --git a/src/python/doc/index.rst b/src/python/doc/index.rst index df1dff68..089efe23 100644 --- a/src/python/doc/index.rst +++ b/src/python/doc/index.rst @@ -92,3 +92,4 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt + :labelprefix: I diff --git a/src/python/doc/nerve_gic_complex_user.rst b/src/python/doc/nerve_gic_complex_user.rst index 208031fb..b022dca7 100644 --- a/src/python/doc/nerve_gic_complex_user.rst +++ b/src/python/doc/nerve_gic_complex_user.rst @@ -320,3 +320,4 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt + :labelprefix: N diff --git a/src/python/doc/persistent_cohomology_user.rst b/src/python/doc/persistent_cohomology_user.rst index 0a5be3a9..f97fc759 100644 --- a/src/python/doc/persistent_cohomology_user.rst +++ b/src/python/doc/persistent_cohomology_user.rst @@ -118,3 +118,4 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt + :labelprefix: PC diff --git a/src/python/doc/rips_complex_user.rst b/src/python/doc/rips_complex_user.rst index 325added..fb6e4b1b 100644 --- a/src/python/doc/rips_complex_user.rst +++ b/src/python/doc/rips_complex_user.rst @@ -354,3 +354,4 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt + :labelprefix: R diff --git a/src/python/doc/simplex_tree_user.rst b/src/python/doc/simplex_tree_user.rst index b0b7153e..5a97b3d7 100644 --- a/src/python/doc/simplex_tree_user.rst +++ b/src/python/doc/simplex_tree_user.rst @@ -73,3 +73,4 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt + :labelprefix: ST diff --git a/src/python/doc/tangential_complex_user.rst b/src/python/doc/tangential_complex_user.rst index 0bcbc848..6cdd6125 100644 --- a/src/python/doc/tangential_complex_user.rst +++ b/src/python/doc/tangential_complex_user.rst @@ -202,3 +202,4 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt + :labelprefix: TA diff --git a/src/python/doc/wasserstein_distance_user.rst b/src/python/doc/wasserstein_distance_user.rst index 9b94573e..817e6981 100644 --- a/src/python/doc/wasserstein_distance_user.rst +++ b/src/python/doc/wasserstein_distance_user.rst @@ -91,3 +91,4 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt + :labelprefix: WA diff --git a/src/python/doc/witness_complex_user.rst b/src/python/doc/witness_complex_user.rst index b932ed0d..c258ad38 100644 --- a/src/python/doc/witness_complex_user.rst +++ b/src/python/doc/witness_complex_user.rst @@ -133,3 +133,4 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt + :labelprefix: WI -- cgit v1.2.3 From dc80ab48359521dac415292f4d2b1f496f326263 Mon Sep 17 00:00:00 2001 From: Marc Glisse Date: Sat, 4 Apr 2020 06:05:57 +0200 Subject: Revert "sphinx label warnings" This reverts commit d9e6b4f51bc8517453653be2904ab6db9aaab85e. It was able to remove the warnings about duplicate labels, but then it shows [WA1] instead of [1] in the generated doc. And for things cited on multiple pages, it uses the same everywhere, so on a single page, you can have a mix of [I1], [WI2], etc. Not very pretty. --- src/python/doc/alpha_complex_user.rst | 1 - src/python/doc/bottleneck_distance_user.rst | 1 - src/python/doc/cubical_complex_user.rst | 1 - src/python/doc/index.rst | 1 - src/python/doc/nerve_gic_complex_user.rst | 1 - src/python/doc/persistent_cohomology_user.rst | 1 - src/python/doc/rips_complex_user.rst | 1 - src/python/doc/simplex_tree_user.rst | 1 - src/python/doc/tangential_complex_user.rst | 1 - src/python/doc/wasserstein_distance_user.rst | 1 - src/python/doc/witness_complex_user.rst | 1 - 11 files changed, 11 deletions(-) (limited to 'src/python/doc/tangential_complex_user.rst') diff --git a/src/python/doc/alpha_complex_user.rst b/src/python/doc/alpha_complex_user.rst index e1903688..6e926fc8 100644 --- a/src/python/doc/alpha_complex_user.rst +++ b/src/python/doc/alpha_complex_user.rst @@ -209,4 +209,3 @@ CGAL citations .. bibliography:: ../../biblio/how_to_cite_cgal.bib :filter: docname in docnames :style: unsrt - :labelprefix: A diff --git a/src/python/doc/bottleneck_distance_user.rst b/src/python/doc/bottleneck_distance_user.rst index 23a87c19..95c4e575 100644 --- a/src/python/doc/bottleneck_distance_user.rst +++ b/src/python/doc/bottleneck_distance_user.rst @@ -72,4 +72,3 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt - :labelprefix: B diff --git a/src/python/doc/cubical_complex_user.rst b/src/python/doc/cubical_complex_user.rst index cdc5b5dc..94f59954 100644 --- a/src/python/doc/cubical_complex_user.rst +++ b/src/python/doc/cubical_complex_user.rst @@ -165,4 +165,3 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt - :labelprefix: CC diff --git a/src/python/doc/index.rst b/src/python/doc/index.rst index 089efe23..df1dff68 100644 --- a/src/python/doc/index.rst +++ b/src/python/doc/index.rst @@ -92,4 +92,3 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt - :labelprefix: I diff --git a/src/python/doc/nerve_gic_complex_user.rst b/src/python/doc/nerve_gic_complex_user.rst index b022dca7..208031fb 100644 --- a/src/python/doc/nerve_gic_complex_user.rst +++ b/src/python/doc/nerve_gic_complex_user.rst @@ -320,4 +320,3 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt - :labelprefix: N diff --git a/src/python/doc/persistent_cohomology_user.rst b/src/python/doc/persistent_cohomology_user.rst index f97fc759..0a5be3a9 100644 --- a/src/python/doc/persistent_cohomology_user.rst +++ b/src/python/doc/persistent_cohomology_user.rst @@ -118,4 +118,3 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt - :labelprefix: PC diff --git a/src/python/doc/rips_complex_user.rst b/src/python/doc/rips_complex_user.rst index fb6e4b1b..325added 100644 --- a/src/python/doc/rips_complex_user.rst +++ b/src/python/doc/rips_complex_user.rst @@ -354,4 +354,3 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt - :labelprefix: R diff --git a/src/python/doc/simplex_tree_user.rst b/src/python/doc/simplex_tree_user.rst index 5a97b3d7..b0b7153e 100644 --- a/src/python/doc/simplex_tree_user.rst +++ b/src/python/doc/simplex_tree_user.rst @@ -73,4 +73,3 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt - :labelprefix: ST diff --git a/src/python/doc/tangential_complex_user.rst b/src/python/doc/tangential_complex_user.rst index 6cdd6125..0bcbc848 100644 --- a/src/python/doc/tangential_complex_user.rst +++ b/src/python/doc/tangential_complex_user.rst @@ -202,4 +202,3 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt - :labelprefix: TA diff --git a/src/python/doc/wasserstein_distance_user.rst b/src/python/doc/wasserstein_distance_user.rst index 817e6981..9b94573e 100644 --- a/src/python/doc/wasserstein_distance_user.rst +++ b/src/python/doc/wasserstein_distance_user.rst @@ -91,4 +91,3 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt - :labelprefix: WA diff --git a/src/python/doc/witness_complex_user.rst b/src/python/doc/witness_complex_user.rst index c258ad38..b932ed0d 100644 --- a/src/python/doc/witness_complex_user.rst +++ b/src/python/doc/witness_complex_user.rst @@ -133,4 +133,3 @@ Bibliography .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames :style: unsrt - :labelprefix: WI -- cgit v1.2.3 From da3b4a79ca40d08ae5597341f4db2418f20fe3d2 Mon Sep 17 00:00:00 2001 From: Marc Glisse Date: Sat, 4 Apr 2020 12:52:52 +0200 Subject: Missing biblio in one file, change title level --- src/python/doc/alpha_complex_user.rst | 2 +- src/python/doc/bottleneck_distance_user.rst | 2 +- src/python/doc/cubical_complex_user.rst | 2 +- src/python/doc/nerve_gic_complex_ref.rst | 7 +++++++ src/python/doc/nerve_gic_complex_user.rst | 2 +- src/python/doc/persistent_cohomology_user.rst | 2 +- src/python/doc/rips_complex_user.rst | 2 +- src/python/doc/simplex_tree_user.rst | 2 +- src/python/doc/tangential_complex_user.rst | 2 +- src/python/doc/wasserstein_distance_user.rst | 2 +- src/python/doc/witness_complex_user.rst | 2 +- 11 files changed, 17 insertions(+), 10 deletions(-) (limited to 'src/python/doc/tangential_complex_user.rst') diff --git a/src/python/doc/alpha_complex_user.rst b/src/python/doc/alpha_complex_user.rst index 6e926fc8..265a82d2 100644 --- a/src/python/doc/alpha_complex_user.rst +++ b/src/python/doc/alpha_complex_user.rst @@ -204,7 +204,7 @@ the program output is: [3, 6] -> 30.25 CGAL citations -============== +-------------- .. bibliography:: ../../biblio/how_to_cite_cgal.bib :filter: docname in docnames diff --git a/src/python/doc/bottleneck_distance_user.rst b/src/python/doc/bottleneck_distance_user.rst index 95c4e575..206fcb63 100644 --- a/src/python/doc/bottleneck_distance_user.rst +++ b/src/python/doc/bottleneck_distance_user.rst @@ -67,7 +67,7 @@ The output is: Bottleneck distance value = 0.75 Bibliography -============ +------------ .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames diff --git a/src/python/doc/cubical_complex_user.rst b/src/python/doc/cubical_complex_user.rst index 94f59954..e8c94bf6 100644 --- a/src/python/doc/cubical_complex_user.rst +++ b/src/python/doc/cubical_complex_user.rst @@ -160,7 +160,7 @@ Examples. End user programs are available in python/example/ folder. Bibliography -============ +------------ .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames diff --git a/src/python/doc/nerve_gic_complex_ref.rst b/src/python/doc/nerve_gic_complex_ref.rst index abde2e8c..6a81b7af 100644 --- a/src/python/doc/nerve_gic_complex_ref.rst +++ b/src/python/doc/nerve_gic_complex_ref.rst @@ -12,3 +12,10 @@ Cover complexes reference manual :show-inheritance: .. automethod:: gudhi.CoverComplex.__init__ + +Bibliography +------------ + +.. bibliography:: ../../biblio/bibliography.bib + :filter: docname in docnames + :style: unsrt diff --git a/src/python/doc/nerve_gic_complex_user.rst b/src/python/doc/nerve_gic_complex_user.rst index 208031fb..f709ce91 100644 --- a/src/python/doc/nerve_gic_complex_user.rst +++ b/src/python/doc/nerve_gic_complex_user.rst @@ -315,7 +315,7 @@ the program outputs again SC.dot which gives the following visualization after u Visualization with neato Bibliography -============ +------------ .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames diff --git a/src/python/doc/persistent_cohomology_user.rst b/src/python/doc/persistent_cohomology_user.rst index 0a5be3a9..506fa3a7 100644 --- a/src/python/doc/persistent_cohomology_user.rst +++ b/src/python/doc/persistent_cohomology_user.rst @@ -113,7 +113,7 @@ We provide several example files: run these examples with -h for details on thei * :download:`tangential_complex_plain_homology_from_off_file_example.py <../example/tangential_complex_plain_homology_from_off_file_example.py>` Bibliography -============ +------------ .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames diff --git a/src/python/doc/rips_complex_user.rst b/src/python/doc/rips_complex_user.rst index 325added..c4bbcfb6 100644 --- a/src/python/doc/rips_complex_user.rst +++ b/src/python/doc/rips_complex_user.rst @@ -349,7 +349,7 @@ until dimension 1 - one skeleton graph in other words), the output is: this is a known issue. Bibliography -============ +------------ .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames diff --git a/src/python/doc/simplex_tree_user.rst b/src/python/doc/simplex_tree_user.rst index b0b7153e..1b272c35 100644 --- a/src/python/doc/simplex_tree_user.rst +++ b/src/python/doc/simplex_tree_user.rst @@ -68,7 +68,7 @@ The output is: ([2], 4.0) Bibliography -============ +------------ .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames diff --git a/src/python/doc/tangential_complex_user.rst b/src/python/doc/tangential_complex_user.rst index 0bcbc848..cf8199cc 100644 --- a/src/python/doc/tangential_complex_user.rst +++ b/src/python/doc/tangential_complex_user.rst @@ -197,7 +197,7 @@ The output is: Bibliography -============ +------------ .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames diff --git a/src/python/doc/wasserstein_distance_user.rst b/src/python/doc/wasserstein_distance_user.rst index 9b94573e..2ae72351 100644 --- a/src/python/doc/wasserstein_distance_user.rst +++ b/src/python/doc/wasserstein_distance_user.rst @@ -86,7 +86,7 @@ The output is: point 1 in dgm2 is matched to the diagonal Bibliography -============ +------------ .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames diff --git a/src/python/doc/witness_complex_user.rst b/src/python/doc/witness_complex_user.rst index b932ed0d..799f5444 100644 --- a/src/python/doc/witness_complex_user.rst +++ b/src/python/doc/witness_complex_user.rst @@ -128,7 +128,7 @@ Here is an example of constructing a strong witness complex filtration and compu * :download:`euclidean_strong_witness_complex_diagram_persistence_from_off_file_example.py <../example/euclidean_strong_witness_complex_diagram_persistence_from_off_file_example.py>` Bibliography -============ +------------ .. bibliography:: ../../biblio/bibliography.bib :filter: docname in docnames -- cgit v1.2.3