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"""This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
Author(s): Vincent Rouvreau
Copyright (C) 2019 Inria
Modification(s):
- YYYY/MM Author: Description of the modification
"""
from setuptools import setup, Extension, find_packages
from Cython.Build import cythonize
from numpy import get_include as numpy_get_include
import sys
import pybind11
__author__ = "Vincent Rouvreau"
__copyright__ = "Copyright (C) 2016 Inria"
__license__ = "MIT"
cython_modules = [@GUDHI_CYTHON_MODULES@]
pybind11_modules = [@GUDHI_PYBIND11_MODULES@]
source_dir='@CMAKE_CURRENT_SOURCE_DIR@/gudhi/'
extra_compile_args=[@GUDHI_PYTHON_EXTRA_COMPILE_ARGS@]
extra_link_args=[@GUDHI_PYTHON_EXTRA_LINK_ARGS@]
libraries=[@GUDHI_PYTHON_LIBRARIES@]
library_dirs=[@GUDHI_PYTHON_LIBRARY_DIRS@]
include_dirs = [numpy_get_include(), '@CMAKE_CURRENT_SOURCE_DIR@/gudhi/', @GUDHI_PYTHON_INCLUDE_DIRS@]
runtime_library_dirs=[@GUDHI_PYTHON_RUNTIME_LIBRARY_DIRS@]
# Create ext_modules list from module list
ext_modules = []
for module in cython_modules:
ext_modules.append(Extension(
'gudhi.' + module,
sources = [source_dir + module + '.pyx',],
language = 'c++',
extra_compile_args=extra_compile_args,
extra_link_args=extra_link_args,
libraries=libraries,
library_dirs=library_dirs,
include_dirs=include_dirs,
runtime_library_dirs=runtime_library_dirs,
cython_directives = {'language_level': str(sys.version_info[0])},))
ext_modules = cythonize(ext_modules)
for module in pybind11_modules:
my_include_dirs = include_dirs + [pybind11.get_include(False), pybind11.get_include(True)]
if module == 'hera/wasserstein':
my_include_dirs = ['@HERA_WASSERSTEIN_INCLUDE_DIR@'] + my_include_dirs
elif module == 'hera/bottleneck':
my_include_dirs = ['@HERA_BOTTLENECK_INCLUDE_DIR@'] + my_include_dirs
ext_modules.append(Extension(
'gudhi.' + module.replace('/', '.'),
sources = [source_dir + module + '.cc'],
language = 'c++',
include_dirs = my_include_dirs,
extra_compile_args=extra_compile_args + [@GUDHI_PYBIND11_EXTRA_COMPILE_ARGS@],
extra_link_args=extra_link_args,
libraries=libraries,
library_dirs=library_dirs,
runtime_library_dirs=runtime_library_dirs,
))
# read the contents of introduction.rst
with open("@CMAKE_CURRENT_BINARY_DIR@/introduction.rst", "r") as fh:
long_description = fh.read()
setup(
name = 'gudhi',
packages=find_packages(), # find_namespace_packages(include=["gudhi*"])
author='GUDHI Editorial Board',
author_email='gudhi-contact@lists.gforge.inria.fr',
version='@GUDHI_VERSION@',
url='https://gudhi.inria.fr/',
project_urls={
'Bug Tracker': 'https://github.com/GUDHI/gudhi-devel/issues',
'Documentation': 'https://gudhi.inria.fr/python/latest/',
'Source Code': 'https://github.com/GUDHI/gudhi-devel',
'License': 'https://gudhi.inria.fr/licensing/'
},
description='The Gudhi library is an open source library for ' \
'Computational Topology and Topological Data Analysis (TDA).',
long_description_content_type='text/x-rst',
long_description=long_description,
ext_modules = ext_modules,
install_requires = ['numpy >= 1.9',],
setup_requires = ['cython','numpy >= 1.9','pybind11',],
package_data={"": ["*.dll"], },
)
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