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-rw-r--r--examples/almostlinear4.lower_distance_matrix3
-rw-r--r--examples/almostlinear4a.lower_distance_matrix3
-rw-r--r--examples/almostlinear4b.lower_distance_matrix3
-rw-r--r--examples/almostlinear4c.lower_distance_matrix3
-rw-r--r--examples/linear5.lower_distance_matrix4
-rw-r--r--examples/test.lower_distance_matrix4
-rw-r--r--examples/test.upper_distance_matrix5
-rw-r--r--examples/test2.lower_distance_matrix5
-rw-r--r--examples/test2.upper_distance_matrix5
-rw-r--r--prettyprint.hpp445
-rw-r--r--ripser.xcodeproj/project.pbxproj276
11 files changed, 0 insertions, 756 deletions
diff --git a/examples/almostlinear4.lower_distance_matrix b/examples/almostlinear4.lower_distance_matrix
deleted file mode 100644
index 0992677..0000000
--- a/examples/almostlinear4.lower_distance_matrix
+++ /dev/null
@@ -1,3 +0,0 @@
-1,
-2,1,
-1,1.9,1
diff --git a/examples/almostlinear4a.lower_distance_matrix b/examples/almostlinear4a.lower_distance_matrix
deleted file mode 100644
index c0e94e6..0000000
--- a/examples/almostlinear4a.lower_distance_matrix
+++ /dev/null
@@ -1,3 +0,0 @@
-1,
-2,1,
-3,4,5
diff --git a/examples/almostlinear4b.lower_distance_matrix b/examples/almostlinear4b.lower_distance_matrix
deleted file mode 100644
index c990b9b..0000000
--- a/examples/almostlinear4b.lower_distance_matrix
+++ /dev/null
@@ -1,3 +0,0 @@
-1,
-2,1,
-3,5,4
diff --git a/examples/almostlinear4c.lower_distance_matrix b/examples/almostlinear4c.lower_distance_matrix
deleted file mode 100644
index da2bb0f..0000000
--- a/examples/almostlinear4c.lower_distance_matrix
+++ /dev/null
@@ -1,3 +0,0 @@
-1,
-2,1,
-4,3,5
diff --git a/examples/linear5.lower_distance_matrix b/examples/linear5.lower_distance_matrix
deleted file mode 100644
index 9a6f670..0000000
--- a/examples/linear5.lower_distance_matrix
+++ /dev/null
@@ -1,4 +0,0 @@
-1,
-2,1,
-3,4,5,
-
diff --git a/examples/test.lower_distance_matrix b/examples/test.lower_distance_matrix
deleted file mode 100644
index e1aac02..0000000
--- a/examples/test.lower_distance_matrix
+++ /dev/null
@@ -1,4 +0,0 @@
-1,
-2,3,
-4,5,6,
-7,8,9,10
diff --git a/examples/test.upper_distance_matrix b/examples/test.upper_distance_matrix
deleted file mode 100644
index 274f252..0000000
--- a/examples/test.upper_distance_matrix
+++ /dev/null
@@ -1,5 +0,0 @@
-1,
-3,4
-4,3,1,
-3,4,3,1
-1,3,4,3,1
diff --git a/examples/test2.lower_distance_matrix b/examples/test2.lower_distance_matrix
deleted file mode 100644
index 4bb81a4..0000000
--- a/examples/test2.lower_distance_matrix
+++ /dev/null
@@ -1,5 +0,0 @@
-1,
-3,1,
-4,3,1,
-3,4,3,1,
-1,3,4,3,1
diff --git a/examples/test2.upper_distance_matrix b/examples/test2.upper_distance_matrix
deleted file mode 100644
index 9d4e39e..0000000
--- a/examples/test2.upper_distance_matrix
+++ /dev/null
@@ -1,5 +0,0 @@
-1,3,4,3,1,
- 1,3,4,3,
- 1,3,4,
- 1,3,
- 1
diff --git a/prettyprint.hpp b/prettyprint.hpp
deleted file mode 100644
index 6bf2543..0000000
--- a/prettyprint.hpp
+++ /dev/null
@@ -1,445 +0,0 @@
-// Copyright Louis Delacroix 2010 - 2014.
-// Distributed under the Boost Software License, Version 1.0.
-// (See accompanying file LICENSE_1_0.txt or copy at
-// http://www.boost.org/LICENSE_1_0.txt)
-//
-// A pretty printing library for C++
-//
-// Usage:
-// Include this header, and operator<< will "just work".
-
-#ifndef H_PRETTY_PRINT
-#define H_PRETTY_PRINT
-
-#include <cstddef>
-#include <iterator>
-#include <memory>
-#include <ostream>
-#include <set>
-#include <tuple>
-#include <type_traits>
-#include <unordered_set>
-#include <utility>
-#include <valarray>
-
-namespace pretty_print
-{
- namespace detail
- {
- // SFINAE type trait to detect whether T::const_iterator exists.
-
- struct sfinae_base
- {
- using yes = char;
- using no = yes[2];
- };
-
- template <typename T>
- struct has_const_iterator : private sfinae_base
- {
- private:
- template <typename C> static yes & test(typename C::const_iterator*);
- template <typename C> static no & test(...);
- public:
- static const bool value = sizeof(test<T>(nullptr)) == sizeof(yes);
- using type = T;
- };
-
- template <typename T>
- struct has_begin_end : private sfinae_base
- {
- private:
- template <typename C>
- static yes & f(typename std::enable_if<
- std::is_same<decltype(static_cast<typename C::const_iterator(C::*)() const>(&C::begin)),
- typename C::const_iterator(C::*)() const>::value>::type *);
-
- template <typename C> static no & f(...);
-
- template <typename C>
- static yes & g(typename std::enable_if<
- std::is_same<decltype(static_cast<typename C::const_iterator(C::*)() const>(&C::end)),
- typename C::const_iterator(C::*)() const>::value, void>::type*);
-
- template <typename C> static no & g(...);
-
- public:
- static bool const beg_value = sizeof(f<T>(nullptr)) == sizeof(yes);
- static bool const end_value = sizeof(g<T>(nullptr)) == sizeof(yes);
- };
-
- } // namespace detail
-
-
- // Holds the delimiter values for a specific character type
-
- template <typename TChar>
- struct delimiters_values
- {
- using char_type = TChar;
- const char_type * prefix;
- const char_type * delimiter;
- const char_type * postfix;
- };
-
-
- // Defines the delimiter values for a specific container and character type
-
- template <typename T, typename TChar>
- struct delimiters
- {
- using type = delimiters_values<TChar>;
- static const type values;
- };
-
-
- // Functor to print containers. You can use this directly if you want
- // to specificy a non-default delimiters type. The printing logic can
- // be customized by specializing the nested template.
-
- template <typename T,
- typename TChar = char,
- typename TCharTraits = ::std::char_traits<TChar>,
- typename TDelimiters = delimiters<T, TChar>>
- struct print_container_helper
- {
- using delimiters_type = TDelimiters;
- using ostream_type = std::basic_ostream<TChar, TCharTraits>;
-
- template <typename U>
- struct printer
- {
- static void print_body(const U & c, ostream_type & stream)
- {
- using std::begin;
- using std::end;
-
- auto it = begin(c);
- const auto the_end = end(c);
-
- if (it != the_end)
- {
- for ( ; ; )
- {
- stream << *it;
-
- if (++it == the_end) break;
-
- if (delimiters_type::values.delimiter != NULL)
- stream << delimiters_type::values.delimiter;
- }
- }
- }
- };
-
- print_container_helper(const T & container)
- : container_(container)
- { }
-
- inline void operator()(ostream_type & stream) const
- {
- if (delimiters_type::values.prefix != NULL)
- stream << delimiters_type::values.prefix;
-
- printer<T>::print_body(container_, stream);
-
- if (delimiters_type::values.postfix != NULL)
- stream << delimiters_type::values.postfix;
- }
-
- private:
- const T & container_;
- };
-
- // Specialization for pairs
-
- template <typename T, typename TChar, typename TCharTraits, typename TDelimiters>
- template <typename T1, typename T2>
- struct print_container_helper<T, TChar, TCharTraits, TDelimiters>::printer<std::pair<T1, T2>>
- {
- using ostream_type = print_container_helper<T, TChar, TCharTraits, TDelimiters>::ostream_type;
-
- static void print_body(const std::pair<T1, T2> & c, ostream_type & stream)
- {
- stream << c.first;
- if (print_container_helper<T, TChar, TCharTraits, TDelimiters>::delimiters_type::values.delimiter != NULL)
- stream << print_container_helper<T, TChar, TCharTraits, TDelimiters>::delimiters_type::values.delimiter;
- stream << c.second;
- }
- };
-
- // Specialization for tuples
-
- template <typename T, typename TChar, typename TCharTraits, typename TDelimiters>
- template <typename ...Args>
- struct print_container_helper<T, TChar, TCharTraits, TDelimiters>::printer<std::tuple<Args...>>
- {
- using ostream_type = print_container_helper<T, TChar, TCharTraits, TDelimiters>::ostream_type;
- using element_type = std::tuple<Args...>;
-
- template <std::size_t I> struct Int { };
-
- static void print_body(const element_type & c, ostream_type & stream)
- {
- tuple_print(c, stream, Int<0>());
- }
-
- static void tuple_print(const element_type &, ostream_type &, Int<sizeof...(Args)>)
- {
- }
-
- static void tuple_print(const element_type & c, ostream_type & stream,
- typename std::conditional<sizeof...(Args) != 0, Int<0>, std::nullptr_t>::type)
- {
- stream << std::get<0>(c);
- tuple_print(c, stream, Int<1>());
- }
-
- template <std::size_t N>
- static void tuple_print(const element_type & c, ostream_type & stream, Int<N>)
- {
- if (print_container_helper<T, TChar, TCharTraits, TDelimiters>::delimiters_type::values.delimiter != NULL)
- stream << print_container_helper<T, TChar, TCharTraits, TDelimiters>::delimiters_type::values.delimiter;
-
- stream << std::get<N>(c);
-
- tuple_print(c, stream, Int<N + 1>());
- }
- };
-
- // Prints a print_container_helper to the specified stream.
-
- template<typename T, typename TChar, typename TCharTraits, typename TDelimiters>
- inline std::basic_ostream<TChar, TCharTraits> & operator<<(
- std::basic_ostream<TChar, TCharTraits> & stream,
- const print_container_helper<T, TChar, TCharTraits, TDelimiters> & helper)
- {
- helper(stream);
- return stream;
- }
-
-
- // Basic is_container template; specialize to derive from std::true_type for all desired container types
-
- template <typename T>
- struct is_container : public std::integral_constant<bool,
- detail::has_const_iterator<T>::value &&
- detail::has_begin_end<T>::beg_value &&
- detail::has_begin_end<T>::end_value> { };
-
- template <typename T, std::size_t N>
- struct is_container<T[N]> : std::true_type { };
-
- template <std::size_t N>
- struct is_container<char[N]> : std::false_type { };
-
- template <typename T>
- struct is_container<std::valarray<T>> : std::true_type { };
-
- template <typename T1, typename T2>
- struct is_container<std::pair<T1, T2>> : std::true_type { };
-
- template <typename ...Args>
- struct is_container<std::tuple<Args...>> : std::true_type { };
-
-
- // Default delimiters
-
- template <typename T> struct delimiters<T, char> { static const delimiters_values<char> values; };
- template <typename T> const delimiters_values<char> delimiters<T, char>::values = { "[", ", ", "]" };
- template <typename T> struct delimiters<T, wchar_t> { static const delimiters_values<wchar_t> values; };
- template <typename T> const delimiters_values<wchar_t> delimiters<T, wchar_t>::values = { L"[", L", ", L"]" };
-
-
- // Delimiters for (multi)set and unordered_(multi)set
-
- template <typename T, typename TComp, typename TAllocator>
- struct delimiters< ::std::set<T, TComp, TAllocator>, char> { static const delimiters_values<char> values; };
-
- template <typename T, typename TComp, typename TAllocator>
- const delimiters_values<char> delimiters< ::std::set<T, TComp, TAllocator>, char>::values = { "{", ", ", "}" };
-
- template <typename T, typename TComp, typename TAllocator>
- struct delimiters< ::std::set<T, TComp, TAllocator>, wchar_t> { static const delimiters_values<wchar_t> values; };
-
- template <typename T, typename TComp, typename TAllocator>
- const delimiters_values<wchar_t> delimiters< ::std::set<T, TComp, TAllocator>, wchar_t>::values = { L"{", L", ", L"}" };
-
- template <typename T, typename TComp, typename TAllocator>
- struct delimiters< ::std::multiset<T, TComp, TAllocator>, char> { static const delimiters_values<char> values; };
-
- template <typename T, typename TComp, typename TAllocator>
- const delimiters_values<char> delimiters< ::std::multiset<T, TComp, TAllocator>, char>::values = { "{", ", ", "}" };
-
- template <typename T, typename TComp, typename TAllocator>
- struct delimiters< ::std::multiset<T, TComp, TAllocator>, wchar_t> { static const delimiters_values<wchar_t> values; };
-
- template <typename T, typename TComp, typename TAllocator>
- const delimiters_values<wchar_t> delimiters< ::std::multiset<T, TComp, TAllocator>, wchar_t>::values = { L"{", L", ", L"}" };
-
- template <typename T, typename THash, typename TEqual, typename TAllocator>
- struct delimiters< ::std::unordered_set<T, THash, TEqual, TAllocator>, char> { static const delimiters_values<char> values; };
-
- template <typename T, typename THash, typename TEqual, typename TAllocator>
- const delimiters_values<char> delimiters< ::std::unordered_set<T, THash, TEqual, TAllocator>, char>::values = { "{", ", ", "}" };
-
- template <typename T, typename THash, typename TEqual, typename TAllocator>
- struct delimiters< ::std::unordered_set<T, THash, TEqual, TAllocator>, wchar_t> { static const delimiters_values<wchar_t> values; };
-
- template <typename T, typename THash, typename TEqual, typename TAllocator>
- const delimiters_values<wchar_t> delimiters< ::std::unordered_set<T, THash, TEqual, TAllocator>, wchar_t>::values = { L"{", L", ", L"}" };
-
- template <typename T, typename THash, typename TEqual, typename TAllocator>
- struct delimiters< ::std::unordered_multiset<T, THash, TEqual, TAllocator>, char> { static const delimiters_values<char> values; };
-
- template <typename T, typename THash, typename TEqual, typename TAllocator>
- const delimiters_values<char> delimiters< ::std::unordered_multiset<T, THash, TEqual, TAllocator>, char>::values = { "{", ", ", "}" };
-
- template <typename T, typename THash, typename TEqual, typename TAllocator>
- struct delimiters< ::std::unordered_multiset<T, THash, TEqual, TAllocator>, wchar_t> { static const delimiters_values<wchar_t> values; };
-
- template <typename T, typename THash, typename TEqual, typename TAllocator>
- const delimiters_values<wchar_t> delimiters< ::std::unordered_multiset<T, THash, TEqual, TAllocator>, wchar_t>::values = { L"{", L", ", L"}" };
-
-
- // Delimiters for pair and tuple
-
- template <typename T1, typename T2> struct delimiters<std::pair<T1, T2>, char> { static const delimiters_values<char> values; };
- template <typename T1, typename T2> const delimiters_values<char> delimiters<std::pair<T1, T2>, char>::values = { "(", ", ", ")" };
- template <typename T1, typename T2> struct delimiters< ::std::pair<T1, T2>, wchar_t> { static const delimiters_values<wchar_t> values; };
- template <typename T1, typename T2> const delimiters_values<wchar_t> delimiters< ::std::pair<T1, T2>, wchar_t>::values = { L"(", L", ", L")" };
-
- template <typename ...Args> struct delimiters<std::tuple<Args...>, char> { static const delimiters_values<char> values; };
- template <typename ...Args> const delimiters_values<char> delimiters<std::tuple<Args...>, char>::values = { "(", ", ", ")" };
- template <typename ...Args> struct delimiters< ::std::tuple<Args...>, wchar_t> { static const delimiters_values<wchar_t> values; };
- template <typename ...Args> const delimiters_values<wchar_t> delimiters< ::std::tuple<Args...>, wchar_t>::values = { L"(", L", ", L")" };
-
-
- // Type-erasing helper class for easy use of custom delimiters.
- // Requires TCharTraits = std::char_traits<TChar> and TChar = char or wchar_t, and MyDelims needs to be defined for TChar.
- // Usage: "cout << pretty_print::custom_delims<MyDelims>(x)".
-
- struct custom_delims_base
- {
- virtual ~custom_delims_base() { }
- virtual std::ostream & stream(::std::ostream &) = 0;
- virtual std::wostream & stream(::std::wostream &) = 0;
- };
-
- template <typename T, typename Delims>
- struct custom_delims_wrapper : custom_delims_base
- {
- custom_delims_wrapper(const T & t_) : t(t_) { }
-
- std::ostream & stream(std::ostream & s)
- {
- return s << print_container_helper<T, char, std::char_traits<char>, Delims>(t);
- }
-
- std::wostream & stream(std::wostream & s)
- {
- return s << print_container_helper<T, wchar_t, std::char_traits<wchar_t>, Delims>(t);
- }
-
- private:
- const T & t;
- };
-
- template <typename Delims>
- struct custom_delims
- {
- template <typename Container>
- custom_delims(const Container & c) : base(new custom_delims_wrapper<Container, Delims>(c)) { }
-
- std::unique_ptr<custom_delims_base> base;
- };
-
- template <typename TChar, typename TCharTraits, typename Delims>
- inline std::basic_ostream<TChar, TCharTraits> & operator<<(std::basic_ostream<TChar, TCharTraits> & s, const custom_delims<Delims> & p)
- {
- return p.base->stream(s);
- }
-
-
- // A wrapper for a C-style array given as pointer-plus-size.
- // Usage: std::cout << pretty_print_array(arr, n) << std::endl;
-
- template<typename T>
- struct array_wrapper_n
- {
- typedef const T * const_iterator;
- typedef T value_type;
-
- array_wrapper_n(const T * const a, size_t n) : _array(a), _n(n) { }
- inline const_iterator begin() const { return _array; }
- inline const_iterator end() const { return _array + _n; }
-
- private:
- const T * const _array;
- size_t _n;
- };
-
-
- // A wrapper for hash-table based containers that offer local iterators to each bucket.
- // Usage: std::cout << bucket_print(m, 4) << std::endl; (Prints bucket 5 of container m.)
-
- template <typename T>
- struct bucket_print_wrapper
- {
- typedef typename T::const_local_iterator const_iterator;
- typedef typename T::size_type size_type;
-
- const_iterator begin() const
- {
- return m_map.cbegin(n);
- }
-
- const_iterator end() const
- {
- return m_map.cend(n);
- }
-
- bucket_print_wrapper(const T & m, size_type bucket) : m_map(m), n(bucket) { }
-
- private:
- const T & m_map;
- const size_type n;
- };
-
-} // namespace pretty_print
-
-
-// Global accessor functions for the convenience wrappers
-
-template<typename T>
-inline pretty_print::array_wrapper_n<T> pretty_print_array(const T * const a, size_t n)
-{
- return pretty_print::array_wrapper_n<T>(a, n);
-}
-
-template <typename T> pretty_print::bucket_print_wrapper<T>
-bucket_print(const T & m, typename T::size_type n)
-{
- return pretty_print::bucket_print_wrapper<T>(m, n);
-}
-
-
-// Main magic entry point: An overload snuck into namespace std.
-// Can we do better?
-
-namespace std
-{
- // Prints a container to the stream using default delimiters
-
- template<typename T, typename TChar, typename TCharTraits>
- inline typename enable_if< ::pretty_print::is_container<T>::value,
- basic_ostream<TChar, TCharTraits> &>::type
- operator<<(basic_ostream<TChar, TCharTraits> & stream, const T & container)
- {
- return stream << ::pretty_print::print_container_helper<T, TChar, TCharTraits>(container);
- }
-}
-
-
-
-#endif // H_PRETTY_PRINT
diff --git a/ripser.xcodeproj/project.pbxproj b/ripser.xcodeproj/project.pbxproj
deleted file mode 100644
index 316b1b2..0000000
--- a/ripser.xcodeproj/project.pbxproj
+++ /dev/null
@@ -1,276 +0,0 @@
-// !$*UTF8*$!
-{
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