From 5f6a9c1c7bf860d3e4baf29b625f71bdb30507a0 Mon Sep 17 00:00:00 2001 From: Ulrich Bauer Date: Sun, 1 Sep 2019 11:31:29 +0200 Subject: removed benchmark files --- benchmarks/Dockerfile | 321 --------------------- benchmarks/output/clifford_torus_50000.ripser.txt | 23 -- benchmarks/output/dragon-2.ripser-no-emergent.txt | 23 -- benchmarks/output/dragon-2.ripser.txt | 23 -- benchmarks/output/fractal-r.ripser.txt | 23 -- benchmarks/output/o3_1024.dipha-multicore.txt | 23 -- benchmarks/output/o3_1024.dipha.txt | 23 -- benchmarks/output/o3_1024.gudhi.txt | 23 -- benchmarks/output/o3_1024.ripser-no-emergent.txt | 23 -- benchmarks/output/o3_1024.ripser-store-reduced.txt | 23 -- benchmarks/output/o3_1024.ripser-use-reduced.txt | 23 -- benchmarks/output/o3_1024.ripser.txt | 23 -- benchmarks/output/o3_4096.gudhi.txt | 23 -- benchmarks/output/o3_4096.ripser-no-emergent.txt | 23 -- benchmarks/output/o3_4096.ripser.txt | 23 -- benchmarks/output/random.ripser-no-emergent.txt | 23 -- benchmarks/output/random.ripser-store-reduced.txt | 23 -- benchmarks/output/random.ripser-use-reduced.txt | 23 -- benchmarks/output/random.ripser.txt | 23 -- .../output/sphere_3_192.ripser-no-emergent.txt | 23 -- .../output/sphere_3_192.ripser-store-reduced.txt | 23 -- .../output/sphere_3_192.ripser-use-reduced.txt | 23 -- benchmarks/output/sphere_3_192.ripser.txt | 23 -- 23 files changed, 827 deletions(-) delete mode 100644 benchmarks/Dockerfile delete mode 100644 benchmarks/output/clifford_torus_50000.ripser.txt delete mode 100644 benchmarks/output/dragon-2.ripser-no-emergent.txt delete mode 100644 benchmarks/output/dragon-2.ripser.txt delete mode 100644 benchmarks/output/fractal-r.ripser.txt delete mode 100644 benchmarks/output/o3_1024.dipha-multicore.txt delete mode 100644 benchmarks/output/o3_1024.dipha.txt delete mode 100644 benchmarks/output/o3_1024.gudhi.txt delete mode 100644 benchmarks/output/o3_1024.ripser-no-emergent.txt delete mode 100644 benchmarks/output/o3_1024.ripser-store-reduced.txt delete mode 100644 benchmarks/output/o3_1024.ripser-use-reduced.txt delete mode 100644 benchmarks/output/o3_1024.ripser.txt delete mode 100644 benchmarks/output/o3_4096.gudhi.txt delete mode 100644 benchmarks/output/o3_4096.ripser-no-emergent.txt delete mode 100644 benchmarks/output/o3_4096.ripser.txt delete mode 100644 benchmarks/output/random.ripser-no-emergent.txt delete mode 100644 benchmarks/output/random.ripser-store-reduced.txt delete mode 100644 benchmarks/output/random.ripser-use-reduced.txt delete mode 100644 benchmarks/output/random.ripser.txt delete mode 100644 benchmarks/output/sphere_3_192.ripser-no-emergent.txt delete mode 100644 benchmarks/output/sphere_3_192.ripser-store-reduced.txt delete mode 100644 benchmarks/output/sphere_3_192.ripser-use-reduced.txt delete mode 100644 benchmarks/output/sphere_3_192.ripser.txt diff --git a/benchmarks/Dockerfile b/benchmarks/Dockerfile deleted file mode 100644 index e349648..0000000 --- a/benchmarks/Dockerfile +++ /dev/null @@ -1,321 +0,0 @@ -# FROM ubuntu:latest - -#FROM ubuntu:18.10 as benchmark-setup -# RUN echo "deb http://archive.ubuntu.com/ubuntu/ cosmic main restricted universe" > /etc/apt/sources.list - -FROM ubuntu:19.04 as benchmark-setup - -RUN apt-get update && \ - apt-get install -y \ - apt-utils \ - cmake \ - curl \ - g++ \ - git \ - gudhi-utils \ - hdf5-tools \ - libcgal-dev \ - libboost-dev \ - libboost-filesystem-dev \ - libboost-test-dev \ - libgmp3-dev \ - libmpfr-dev \ - libtbb-dev \ - libopenmpi-dev \ - make \ - python-minimal \ - python-pip \ - time \ - unzip \ - && rm -rf /var/lib/apt/lists/* - -WORKDIR /external - -RUN curl -LO https://julialang-s3.julialang.org/bin/linux/x64/1.1/julia-1.1.0-linux-x86_64.tar.gz \ - && tar xf julia-1.1.0-linux-x86_64.tar.gz -ENV PATH="${PATH}:/external/julia-1.1.0/bin" - -RUN julia --eval 'using Pkg; Pkg.add("Plotly"); Pkg.add("Eirene"); using Eirene;' - - -WORKDIR /benchmark -COPY sphere_3_192_points.dat . -COPY sphere_3_192.complex . -COPY o3_1024.txt . -COPY o3_1024_1.8.dipha . -COPY o3_4096.txt . -# COPY o3_4096_1.4.dipha . -COPY clifford_torus_50000.points.txt . -# COPY dragon_2000.dipha . - - - -RUN curl -LO https://github.com/n-otter/PH-roadmap/raw/master/data_sets/roadmap_datasets_distmat/fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt \ -&& curl -LO https://github.com/n-otter/PH-roadmap/raw/master/data_sets/roadmap_datasets_distmat/dipha/fractal_9_5_2_random.bin \ -\ -&& curl -LO https://github.com/n-otter/PH-roadmap/raw/master/data_sets/roadmap_datasets_point_cloud/dragon_vrip.ply.txt_2000_.txt \ -\ -# && curl -LO https://github.com/n-otter/PH-roadmap/raw/master/data_sets/roadmap_datasets_distmat/human_gene_distmat.txt \ -\ -&& curl -LO https://github.com/n-otter/PH-roadmap/raw/master/data_sets/roadmap_datasets_point_cloud/random_point_cloud_50_16_.txt \ -&& curl -LO https://github.com/n-otter/PH-roadmap/raw/master/data_sets/roadmap_datasets_distmat/dipha/random_50_16.bin - -RUN (echo "OFF\n2000 0 0" && cat dragon_vrip.ply.txt_2000_.txt) >dragon_vrip.ply.txt_2000_.off \ -&& (echo "OFF\n50 0 0" && cat random_point_cloud_50_16_.txt) >random_point_cloud_50_16_.off \ -&& (echo "OFF\n1024 0 0" && cat sphere_3_192_points.dat) > sphere_3_192.off \ -&& (echo "OFF\n1024 0 0" && cat o3_1024.txt) >o3_1024.off \ -&& (echo "OFF\n4096 0 0" && cat o3_4096.txt) >o3_4096.off \ -&& (echo "nOFF\n4 50000 0 0" && cat clifford_torus_50000.points.txt) >clifford_torus_50000.points.off - - -FROM benchmark-setup as benchmark-ripser - -WORKDIR /ripser -RUN git clone https://github.com/Ripser/ripser.git \ -&& cd ripser \ -&& git checkout dev \ -&& make - -ENV PATH="${PATH}:/ripser/ripser" - -WORKDIR /benchmark -RUN time -v -o sphere_3_192.ripser.txt ripser sphere_3_192_points.dat --format point-cloud --dim 2 -RUN time -v -o o3_1024.ripser.txt ripser o3_1024.txt --format point-cloud --dim 3 --threshold 1.8 --ratio 2 -RUN time -v -o o3_4096.ripser.txt ripser o3_4096.txt --format point-cloud --dim 3 --threshold 1.4 --ratio 2 -RUN time -v -o clifford_torus_50000.ripser.txt ripser clifford_torus_50000.points.txt --format point-cloud --dim 2 --threshold .15 --ratio 2 - -RUN time -v -o random.ripser.txt ripser random_point_cloud_50_16_.txt --format point-cloud --dim 7 -RUN time -v -o fractal-r.ripser.txt ripser fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt --dim 2 -RUN time -v -o dragon-2.ripser.txt ripser dragon_vrip.ply.txt_2000_.txt --format point-cloud --dim 1 -# RUN time -v -o genome.ripser.txt ripser human_gene_distmat.txt --dim 1 - - -FROM benchmark-ripser as benchmark-ripser-no-emergent - -WORKDIR /ripser/ripser -RUN git pull && git checkout benchmarks/disable-emergent-pairs \ -&& make - -WORKDIR /benchmark -RUN time -v -o sphere_3_192.ripser-no-emergent.txt ripser sphere_3_192_points.dat --format point-cloud --dim 2 -RUN time -v -o random.ripser-no-emergent.txt ripser random_point_cloud_50_16_.txt --format point-cloud --dim 7 -RUN time -v -o fractal-r.ripser-no-emergent.txt ripser fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt --dim 2 -RUN time -v -o dragon-2.ripser-no-emergent.txt ripser dragon_vrip.ply.txt_2000_.txt --format point-cloud --dim 1 -# RUN time -v -o genome.ripser-no-emergent.txt ripser human_gene_distmat.txt --dim 1 -RUN time -v -o o3_1024.ripser-no-emergent.txt ripser o3_1024.txt --format point-cloud --dim 3 --threshold 1.8 --ratio 2 -RUN time -v -o o3_4096.ripser-no-emergent.txt ripser o3_4096.txt --format point-cloud --dim 3 --threshold 1.4 --ratio 2 -RUN time -v -o clifford_torus_50000.ripser-no-emergent.txt ripser clifford_torus_50000.points.txt --format point-cloud --dim 2 --threshold .15 --ratio 2 - - -FROM benchmark-ripser as benchmark-ripser-store-reduced - -WORKDIR /ripser/ripser -RUN git pull && git checkout benchmarks/store-reduced-matrix \ -&& make - -WORKDIR /benchmark -RUN time -v -o sphere_3_192.ripser-store-reduced.txt ripser sphere_3_192_points.dat --format point-cloud --dim 2 -RUN time -v -o random.ripser-store-reduced.txt ripser random_point_cloud_50_16_.txt --format point-cloud --dim 7 -# RUN time -v -o fractal-r.ripser-store-reduced.txt ripser fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt --dim 2 -# RUN time -v -o dragon-2.ripser-store-reduced.txt ripser dragon_vrip.ply.txt_2000_.txt --format point-cloud --dim 1 -# RUN time -v -o genome.ripser-store-reduced.txt ripser human_gene_distmat.txt --dim 1 -RUN time -v -o o3_1024.ripser-store-reduced.txt ripser o3_1024.txt --format point-cloud --dim 3 --threshold 1.8 --ratio 2 -# RUN time -v -o o3_4096.ripser-store-reduced.txt ripser o3_4096.txt --format point-cloud --dim 3 --threshold 1.4 --ratio 2 -# RUN time -v -o clifford_torus_50000.ripser-store-reduced.txt ripser clifford_torus_50000.points.txt --format point-cloud --dim 2 --threshold .15 --ratio 2 - - -FROM benchmark-ripser as benchmark-ripser-use-reduced - -WORKDIR /ripser/ripser -RUN git pull && git checkout benchmarks/use-reduced-matrix \ -&& make - -WORKDIR /benchmark -RUN time -v -o sphere_3_192.ripser-use-reduced.txt ripser sphere_3_192_points.dat --format point-cloud --dim 2 -RUN time -v -o random.ripser-use-reduced.txt ripser random_point_cloud_50_16_.txt --format point-cloud --dim 7 -# RUN time -v -o fractal-r.ripser-use-reduced.txt ripser fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt --dim 2 -# RUN time -v -o dragon-2.ripser-use-reduced.txt ripser dragon_vrip.ply.txt_2000_.txt --format point-cloud --dim 1 -# RUN time -v -o genome.ripser-use-reduced.txt ripser human_gene_distmat.txt --dim 1 -RUN time -v -o o3_1024.ripser-use-reduced.txt ripser o3_1024.txt --format point-cloud --dim 3 --threshold 1.8 --ratio 2 -# RUN time -v -o o3_4096.ripser-use-reduced.txt ripser o3_4096.txt --format point-cloud --dim 3 --threshold 1.4 --ratio 2 -# RUN time -v -o clifford_torus_50000.ripser-use-reduced.txt ripser clifford_torus_50000.points.txt --format point-cloud --dim 2 --threshold .15 --ratio 2 - - -FROM benchmark-setup as benchmark-gudhi - -# WORKDIR /gudhi -# -# RUN curl -LO "https://gforge.inria.fr/frs/download.php/file/37696/2018-09-04-14-25-00_GUDHI_2.3.0.tar.gz" \ -# && tar xf 2018-09-04-14-25-00_GUDHI_2.3.0.tar.gz \ -# && cd 2018-09-04-14-25-00_GUDHI_2.3.0 \ -# && mkdir build \ -# && cd build \ -# && cmake -DCMAKE_BUILD_TYPE="Release" .. \ -# && make rips_distance_matrix_persistence -# -# ENV PATH="${PATH}:/gudhi/2018-09-04-14-25-00_GUDHI_2.3.0/build/utilities/Rips_complex" -# -# WORKDIR /benchmark -# RUN time -v -o sphere_3_192.gudhi.txt rips_distance_matrix_persistence -d3 -p2 sphere_3_192.distance_matrix - -WORKDIR /benchmark -RUN time -v -o sphere_3_192.gudhi.txt gudhi-rips-persistence -d3 -p2 sphere_3_192.off >sphere_3_192.gudhi.out.txt -# RUN time -v -o fractal-r.gudhi.txt gudhi-rips-distance-matrix-persistence -d3 -p2 fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt >fractal-r.gudhi.out.txt -RUN time -v -o o3_1024.gudhi.txt gudhi-rips-persistence -d4 -p2 -r 1.8 o3_1024.off >o3_1024.gudhi.out.txt -RUN time -v -o o3_4096.gudhi.txt gudhi-rips-persistence -d4 -p2 -r 1.4 o3_4096.off >o3_4096.gudhi.out.txt -RUN time -v -o clifford_torus_50000.gudhi.txt gudhi-rips-persistence -d3 -p2 -r 0.15 clifford_torus_50000.points.off >clifford_torus_50000.gudhi.out.txt - - -FROM benchmark-setup as benchmark-dipha - -WORKDIR /dipha - -RUN git clone https://github.com/DIPHA/dipha.git \ -&& cd dipha \ -&& mkdir build \ -&& cd build \ -&& cmake .. \ -&& make - -ENV PATH="${PATH}:/dipha/dipha/build" - -WORKDIR /benchmark -RUN time -v -o sphere_3_192.dipha.txt dipha --dual --benchmark --upper_dim 3 sphere_3_192.complex sphere_3_192.dipha.diagram -RUN time -v -o o3_1024.dipha.txt dipha --dual --benchmark --upper_dim 4 o3_1024_1.8.dipha o3_1024_1.8.dipha.diagram -# RUN time -v -o o3_4096.dipha.txt dipha --dual --benchmark --upper_dim 4 o3_4096_1.4.dipha o3_4096_1.4.dipha.diagram -# RUN time -v -o dragon-2.dipha.txt dipha --dual --benchmark --upper_dim 2 dragon_2000.dipha dragon_2000.dipha.diagram - - - -# FROM benchmark-dipha as benchmark-dipha-multicore - -RUN time -v -o sphere_3_192.dipha-multicore.txt mpiexec --allow-run-as-root --mca btl_vader_single_copy_mechanism none \ -dipha --dual --benchmark --upper_dim 3 sphere_3_192.complex sphere_3_192.dipha-multicore.diagram - -RUN time -v -o o3_1024.dipha-multicore.txt mpiexec --allow-run-as-root --mca btl_vader_single_copy_mechanism none \ -dipha --dual --benchmark --upper_dim 4 o3_1024_1.8.dipha o3_1024_1.8.dipha-multicore.diagram - - -### FROM benchmark-setup as benchmark-eirene037 -### -### WORKDIR /eirene -### -### RUN curl -LO https://julialang-s3.julialang.org/bin/linux/x64/0.6/julia-0.6.4-linux-x86_64.tar.gz \ -### && tar xf julia-0.6.4-linux-x86_64.tar.gz -### -### RUN curl -LO "http://gregoryhenselman.org/eirene/ewExternalFiles/Eirene0_3_7.zip" \ -### && unzip Eirene0_3_7.zip \ -### && cd Eirene0_3_7 -### -### # ENV PATH="${PATH}:/eirene/julia-9d11f62bcb/bin" -### -### # RUN julia --eval 'Pkg.clone("https://github.com/Eetion/Eirene.jl.git"); using Eirene' -### # RUN julia --eval ' \ -### # Pkg.clone("https://github.com/bnels/PlotlyJS.jl.git"); \ -### # Pkg.checkout("PlotlyJS","fix-jsstring"); \ -### # Pkg.add("Eirene");' -### RUN /eirene/julia-9d11f62bcb/bin/julia --eval ' \ -### Pkg.clone("https://github.com/bnels/PlotlyJS.jl.git"); \ -### Pkg.checkout("PlotlyJS","fix-jsstring");' -### RUN /eirene/julia-9d11f62bcb/bin/julia --eval 'Pkg.add("Distances"); Pkg.add("JLD"); Pkg.add("Blink"); Pkg.add("Plotly"); Pkg.add("MultivariateStats");' -### RUN /eirene/julia-9d11f62bcb/bin/julia --load /eirene/Eirene0_3_7/Eirene0_3_7_mutable.jl --eval 'eirene([0 1; 1 0]);' -### -### WORKDIR /benchmark -### RUN time -v -o sphere_3_192.eirene037.txt \ -### /eirene/julia-9d11f62bcb/bin/julia --load /eirene/Eirene0_3_7/Eirene0_3_7_mutable.jl --eval 'eirene([0 1; 1 0]); p = readdlm("sphere_3_192.distance_matrix"); \ -### tic(); eirene(p, record="none", bettimax=2); toc();' >sphere_3_192.eirene037.out.txt -### -### RUN time -v -o dragon-2.eirene037.txt \ -### /eirene/julia-9d11f62bcb/bin/julia --load /eirene/Eirene0_3_7/Eirene0_3_7_mutable.jl --eval 'eirene([0 1; 1 0]); p = readdlm("dragon_vrip.ply.txt_2000_.txt"); \ -### tic(); eirene(p, rowsare="points", record="none", bettimax=1); toc();' >dragon-2.eirene037.out.txt -### RUN time -v -o fractal-r.eirene037.txt \ -### /eirene/julia-9d11f62bcb/bin/julia --load /eirene/Eirene0_3_7/Eirene0_3_7_mutable.jl --eval 'eirene([0 1; 1 0]); p = readdlm("fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt"); \ -### tic(); eirene(p, record="none", bettimax=2); toc();' >fractal-r.eirene037.out.txt -### RUN time -v -o random.eirene037.txt \ -### /eirene/julia-9d11f62bcb/bin/julia --load /eirene/Eirene0_3_7/Eirene0_3_7_mutable.jl --eval 'eirene([0 1; 1 0]); p = readdlm("random_point_cloud_50_16_.txt"); \ -### tic(); eirene(p, rowsare="points", record="none", bettimax=7); toc();' >random.eirene037.out.txt - - - -FROM benchmark-setup as benchmark-eirene - -WORKDIR /eirene - -#RUN curl -LO https://julialang-s3.julialang.org/bin/linux/x64/1.1/julia-1.1.0-linux-x86_64.tar.gz \ -#&& tar xf julia-1.1.0-linux-x86_64.tar.gz -#ENV PATH="${PATH}:/eirene/julia-1.1.0/bin" - -#RUN julia --eval 'using Pkg; Pkg.add("Plotly"); Pkg.add("Eirene"); using Eirene' - -WORKDIR /benchmark - -RUN time -v -o sphere_3_192.eirene.txt \ - julia --eval 'maxdim = 2; using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed (d = transpose(readdlm("sphere_3_192_points.dat")); result = eirene(d, model="pc", record="none", maxdim=maxdim))); for i in 0:maxdim print("dim $(i): "); show(stdout, "text/plain", (barcode(result , dim = i))); println(); end' >sphere_3_192.eirene.out.txt - -RUN time -v -o o3_1024.eirene.txt \ - julia --eval 'maxdim = 3; maxrad = 1.8; using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed (d = transpose(readdlm("o3_1024.txt")); result = eirene(d, model="pc", record="none", maxdim=maxdim, maxrad=maxrad))); for i in 0:maxdim print("dim $(i): "); show(stdout, "text/plain", (barcode(result , dim = i))); println(); end' > o3_1024.eirene.out.txt - -RUN time -v -o o3_4096.eirene.txt \ - julia --eval 'maxdim = 3; maxrad = 1.4; using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed (d = transpose(readdlm("o3_4096.txt")); result = eirene(d, model="pc", record="none", maxdim=maxdim, maxrad=maxrad))); for i in 0:maxdim print("dim $(i): "); show(stdout, "text/plain", (barcode(result , dim = i))); println(); end' > o3_4096.eirene.out.txt - -# RUN time -v -o clifford_torus_50000.points.eirene.txt \ -# julia --eval 'maxdim = 2; maxrad = .15; using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed (d = transpose(readdlm("clifford_torus_50000.points.txt")); result = eirene(d, model="pc", record="none", maxdim=maxdim, maxrad=maxrad))); for i in 0:maxdim print("dim $(i): "); show(stdout, "text/plain", (barcode(result , dim = i))); println(); end' > clifford_torus_50000.eirene.out.txt - -RUN time -v -o dragon-2.eirene.txt \ - julia --eval 'maxdim = 1; using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed (d = transpose(readdlm("dragon_vrip.ply.txt_2000_.txt")); result = eirene(d, model="pc", record="none", maxdim=maxdim))); for i in 0:maxdim print("dim $(i): "); show(stdout, "text/plain", (barcode(result , dim = i))); println(); end' >dragon-2.eirene.out.txt - -RUN time -v -o fractal-r.eirene.txt \ - julia --eval 'maxdim = 2; using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed (d = (m->(m+transpose(m))/2)(readdlm("fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt")); result = eirene(d, record="none", maxdim=maxdim))); for i in 0:maxdim print("dim $(i): "); show(stdout, "text/plain", (barcode(result , dim = i))); println(); end' >fractal-r.eirene.out.txt - -RUN time -v -o random.eirene.txt \ - julia --eval 'maxdim = 7; maxrad = 1.7753855751520569; using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed (d = transpose(readdlm("random_point_cloud_50_16_.txt")); result = eirene(d, model="pc", record="none", maxdim=maxdim, maxrad=maxrad))); for i in 0:maxdim print("dim $(i): "); show(stdout, "text/plain", (barcode(result , dim = i))); println(); end' >random.eirene.out.txt - -# -# using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed result=eirene(transpose(readdlm("/Users/uli/Bitbucket/ripser/examples/o3_1024.txt")), model="pc", record="none", maxdim=3, maxrad=1.8)) -# using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed result=eirene(transpose(readdlm("/Users/uli/Bitbucket/ripser/examples/o3_2048.txt")), model="pc", record="none", maxdim=3, maxrad=1.6)) -# using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed result=eirene(transpose(readdlm("/Users/uli/Bitbucket/ripser/examples/o3_4096.txt")), model="pc", record="none", maxdim=3, maxrad=1.4)) -# - -FROM benchmark-setup as benchmark-dionysus2 - -WORKDIR /dionysus2 - -RUN pip install numpy scipy dionysus - -# RUN git clone https://github.com/mrzv/dionysus.git \ -# && cd dionysus \ -# && mkdir build \ -# && cd build \ -# && cmake .. \ -# && make rips-pairwise -# -# ENV PATH="${PATH}:/dionysus2/dionysus/build/examples/rips" - -WORKDIR /benchmark -# RUN time -v -o sphere_3_192.dionysus-cpp.txt rips-pairwise sphere_3_192_points.dat -s3 - -#RUN time -v -o sphere.dionysus-py.txt python -c 'import dionysus as d; from numpy import loadtxt, inf; import math; from scipy.spatial.distance import squareform; \ -# d.cohomology_persistence(d.fill_rips(squareform(loadtxt("sphere_3_192.distance_matrix")), 3, inf));' - -#RUN time -v -o dragon-2.dionysus-py.txt python -c 'import dionysus as d; from numpy import loadtxt, inf; import math; from scipy.spatial.distance import squareform; \ -# d.cohomology_persistence(d.fill_rips(loadtxt("dragon_vrip.ply.txt_2000_.txt"), 2, inf));' - -#RUN time -v -o fractal.dionysus-py.txt python -c 'import dionysus as d; from numpy import loadtxt, inf; import math; from scipy.spatial.distance import squareform; \ -# d.cohomology_persistence(d.fill_rips(squareform(loadtxt("fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt")), 3, inf));' - - -FROM benchmark-setup as benchmark-output - -COPY --from=benchmark-ripser /benchmark /benchmark -COPY --from=benchmark-gudhi /benchmark /benchmark -COPY --from=benchmark-dipha /benchmark /benchmark -COPY --from=benchmark-eirene /benchmark /benchmark -# COPY --from=benchmark-eirene037 /benchmark /benchmark -COPY --from=benchmark-dionysus2 /benchmark /benchmark - -COPY --from=benchmark-ripser-no-emergent /benchmark /benchmark -COPY --from=benchmark-ripser-store-reduced /benchmark /benchmark -COPY --from=benchmark-ripser-use-reduced /benchmark /benchmark - -RUN ls -l /benchmark - diff --git a/benchmarks/output/clifford_torus_50000.ripser.txt b/benchmarks/output/clifford_torus_50000.ripser.txt deleted file mode 100644 index 756f7ae..0000000 --- a/benchmarks/output/clifford_torus_50000.ripser.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "ripser clifford_torus_50000.points.txt --format point-cloud --dim 2 --threshold .15 --ratio 2" - User time (seconds): 129.19 - System time (seconds): 12.06 - Percent of CPU this job got: 99% - Elapsed (wall clock) time (h:mm:ss or m:ss): 2:21.35 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 8593448 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 4911670 - Voluntary context switches: 7 - Involuntary context switches: 1506 - Swaps: 0 - File system inputs: 0 - File system outputs: 0 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/dragon-2.ripser-no-emergent.txt b/benchmarks/output/dragon-2.ripser-no-emergent.txt deleted file mode 100644 index 2693a67..0000000 --- a/benchmarks/output/dragon-2.ripser-no-emergent.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "ripser dragon_vrip.ply.txt_2000_.txt --format point-cloud --dim 1" - User time (seconds): 40.30 - System time (seconds): 0.32 - Percent of CPU this job got: 99% - Elapsed (wall clock) time (h:mm:ss or m:ss): 0:40.66 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 257872 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 150721 - Voluntary context switches: 1 - Involuntary context switches: 462 - Swaps: 0 - File system inputs: 0 - File system outputs: 0 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/dragon-2.ripser.txt b/benchmarks/output/dragon-2.ripser.txt deleted file mode 100644 index 2319b97..0000000 --- a/benchmarks/output/dragon-2.ripser.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "ripser dragon_vrip.ply.txt_2000_.txt --format point-cloud --dim 1" - User time (seconds): 1.78 - System time (seconds): 0.19 - Percent of CPU this job got: 91% - Elapsed (wall clock) time (h:mm:ss or m:ss): 0:02.14 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 257864 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 150721 - Voluntary context switches: 2 - Involuntary context switches: 337 - Swaps: 0 - File system inputs: 0 - File system outputs: 0 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/fractal-r.ripser.txt b/benchmarks/output/fractal-r.ripser.txt deleted file mode 100644 index f245ae3..0000000 --- a/benchmarks/output/fractal-r.ripser.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "ripser fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt --dim 2" - User time (seconds): 13.98 - System time (seconds): 1.01 - Percent of CPU this job got: 98% - Elapsed (wall clock) time (h:mm:ss or m:ss): 0:15.16 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 1803484 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 768895 - Voluntary context switches: 1 - Involuntary context switches: 1041 - Swaps: 0 - File system inputs: 0 - File system outputs: 0 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/o3_1024.dipha-multicore.txt b/benchmarks/output/o3_1024.dipha-multicore.txt deleted file mode 100644 index 9f29568..0000000 --- a/benchmarks/output/o3_1024.dipha-multicore.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "mpiexec --allow-run-as-root --mca btl_vader_single_copy_mechanism none dipha --dual --benchmark --upper_dim 4 o3_1024_1.8.dipha o3_1024_1.8.dipha-multicore.diagram" - User time (seconds): 315.48 - System time (seconds): 2.79 - Percent of CPU this job got: 787% - Elapsed (wall clock) time (h:mm:ss or m:ss): 0:40.42 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 288828 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 6 - Minor (reclaiming a frame) page faults: 947004 - Voluntary context switches: 6113 - Involuntary context switches: 7400 - Swaps: 0 - File system inputs: 0 - File system outputs: 16560 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/o3_1024.dipha.txt b/benchmarks/output/o3_1024.dipha.txt deleted file mode 100644 index 59f810a..0000000 --- a/benchmarks/output/o3_1024.dipha.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "dipha --dual --benchmark --upper_dim 4 o3_1024_1.8.dipha o3_1024_1.8.dipha.diagram" - User time (seconds): 45.89 - System time (seconds): 1.32 - Percent of CPU this job got: 99% - Elapsed (wall clock) time (h:mm:ss or m:ss): 0:47.53 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 1412520 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 1413259 - Voluntary context switches: 742 - Involuntary context switches: 393 - Swaps: 0 - File system inputs: 0 - File system outputs: 128 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/o3_1024.gudhi.txt b/benchmarks/output/o3_1024.gudhi.txt deleted file mode 100644 index 27f1c3e..0000000 --- a/benchmarks/output/o3_1024.gudhi.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "gudhi-rips-persistence -d4 -p2 -r 1.8 o3_1024.off" - User time (seconds): 13.51 - System time (seconds): 0.17 - Percent of CPU this job got: 179% - Elapsed (wall clock) time (h:mm:ss or m:ss): 0:07.63 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 624828 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 1 - Minor (reclaiming a frame) page faults: 155463 - Voluntary context switches: 116 - Involuntary context switches: 1252 - Swaps: 0 - File system inputs: 232 - File system outputs: 72 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/o3_1024.ripser-no-emergent.txt b/benchmarks/output/o3_1024.ripser-no-emergent.txt deleted file mode 100644 index 2c2f69a..0000000 --- a/benchmarks/output/o3_1024.ripser-no-emergent.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "ripser o3_1024.txt --format point-cloud --dim 3 --threshold 1.8 --ratio 2" - User time (seconds): 5.24 - System time (seconds): 0.10 - Percent of CPU this job got: 100% - Elapsed (wall clock) time (h:mm:ss or m:ss): 0:05.32 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 178804 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 60265 - Voluntary context switches: 1 - Involuntary context switches: 48 - Swaps: 0 - File system inputs: 0 - File system outputs: 0 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/o3_1024.ripser-store-reduced.txt b/benchmarks/output/o3_1024.ripser-store-reduced.txt deleted file mode 100644 index 4fc65cf..0000000 --- a/benchmarks/output/o3_1024.ripser-store-reduced.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "ripser o3_1024.txt --format point-cloud --dim 3 --threshold 1.8 --ratio 2" - User time (seconds): 6.50 - System time (seconds): 0.64 - Percent of CPU this job got: 98% - Elapsed (wall clock) time (h:mm:ss or m:ss): 0:07.23 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 1239792 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 514672 - Voluntary context switches: 1 - Involuntary context switches: 100 - Swaps: 0 - File system inputs: 0 - File system outputs: 0 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/o3_1024.ripser-use-reduced.txt b/benchmarks/output/o3_1024.ripser-use-reduced.txt deleted file mode 100644 index c93a2c0..0000000 --- a/benchmarks/output/o3_1024.ripser-use-reduced.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "ripser o3_1024.txt --format point-cloud --dim 3 --threshold 1.8 --ratio 2" - User time (seconds): 6.37 - System time (seconds): 0.56 - Percent of CPU this job got: 99% - Elapsed (wall clock) time (h:mm:ss or m:ss): 0:06.94 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 1239568 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 514607 - Voluntary context switches: 1 - Involuntary context switches: 111 - Swaps: 0 - File system inputs: 0 - File system outputs: 0 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/o3_1024.ripser.txt b/benchmarks/output/o3_1024.ripser.txt deleted file mode 100644 index 1d2f195..0000000 --- a/benchmarks/output/o3_1024.ripser.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "ripser o3_1024.txt --format point-cloud --dim 3 --threshold 1.8 --ratio 2" - User time (seconds): 2.07 - System time (seconds): 0.11 - Percent of CPU this job got: 96% - Elapsed (wall clock) time (h:mm:ss or m:ss): 0:02.26 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 178776 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 60267 - Voluntary context switches: 1 - Involuntary context switches: 81 - Swaps: 0 - File system inputs: 0 - File system outputs: 0 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/o3_4096.gudhi.txt b/benchmarks/output/o3_4096.gudhi.txt deleted file mode 100644 index 876507a..0000000 --- a/benchmarks/output/o3_4096.gudhi.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "gudhi-rips-persistence -d4 -p2 -r 1.4 o3_4096.off" - User time (seconds): 675.55 - System time (seconds): 25.12 - Percent of CPU this job got: 198% - Elapsed (wall clock) time (h:mm:ss or m:ss): 5:52.73 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 18652260 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 4663080 - Voluntary context switches: 42 - Involuntary context switches: 12700 - Swaps: 0 - File system inputs: 0 - File system outputs: 296 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/o3_4096.ripser-no-emergent.txt b/benchmarks/output/o3_4096.ripser-no-emergent.txt deleted file mode 100644 index 4b1ff37..0000000 --- a/benchmarks/output/o3_4096.ripser-no-emergent.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "ripser o3_4096.txt --format point-cloud --dim 3 --threshold 1.4 --ratio 2" - User time (seconds): 174.88 - System time (seconds): 2.05 - Percent of CPU this job got: 100% - Elapsed (wall clock) time (h:mm:ss or m:ss): 2:56.88 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 3861344 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 1672013 - Voluntary context switches: 1 - Involuntary context switches: 594 - Swaps: 0 - File system inputs: 0 - File system outputs: 0 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/o3_4096.ripser.txt b/benchmarks/output/o3_4096.ripser.txt deleted file mode 100644 index 2a5d61e..0000000 --- a/benchmarks/output/o3_4096.ripser.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "ripser o3_4096.txt --format point-cloud --dim 3 --threshold 1.4 --ratio 2" - User time (seconds): 60.51 - System time (seconds): 2.02 - Percent of CPU this job got: 99% - Elapsed (wall clock) time (h:mm:ss or m:ss): 1:02.54 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 3861300 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 1672012 - Voluntary context switches: 2 - Involuntary context switches: 434 - Swaps: 0 - File system inputs: 0 - File system outputs: 0 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/random.ripser-no-emergent.txt b/benchmarks/output/random.ripser-no-emergent.txt deleted file mode 100644 index cfdb8fc..0000000 --- a/benchmarks/output/random.ripser-no-emergent.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "ripser random_point_cloud_50_16_.txt --format point-cloud --dim 7" - User time (seconds): 13.82 - System time (seconds): 0.22 - Percent of CPU this job got: 100% - Elapsed (wall clock) time (h:mm:ss or m:ss): 0:14.02 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 339084 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 150128 - Voluntary context switches: 2 - Involuntary context switches: 102 - Swaps: 0 - File system inputs: 0 - File system outputs: 0 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/random.ripser-store-reduced.txt b/benchmarks/output/random.ripser-store-reduced.txt deleted file mode 100644 index efeb5b5..0000000 --- a/benchmarks/output/random.ripser-store-reduced.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "ripser random_point_cloud_50_16_.txt --format point-cloud --dim 7" - User time (seconds): 15.99 - System time (seconds): 0.92 - Percent of CPU this job got: 99% - Elapsed (wall clock) time (h:mm:ss or m:ss): 0:16.92 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 1366796 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 961778 - Voluntary context switches: 1 - Involuntary context switches: 242 - Swaps: 0 - File system inputs: 0 - File system outputs: 0 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/random.ripser-use-reduced.txt b/benchmarks/output/random.ripser-use-reduced.txt deleted file mode 100644 index d767db9..0000000 --- a/benchmarks/output/random.ripser-use-reduced.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "ripser random_point_cloud_50_16_.txt --format point-cloud --dim 7" - User time (seconds): 16.15 - System time (seconds): 1.03 - Percent of CPU this job got: 99% - Elapsed (wall clock) time (h:mm:ss or m:ss): 0:17.26 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 1366620 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 964013 - Voluntary context switches: 1 - Involuntary context switches: 118 - Swaps: 0 - File system inputs: 0 - File system outputs: 0 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/random.ripser.txt b/benchmarks/output/random.ripser.txt deleted file mode 100644 index ac9822c..0000000 --- a/benchmarks/output/random.ripser.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "ripser random_point_cloud_50_16_.txt --format point-cloud --dim 7" - User time (seconds): 6.25 - System time (seconds): 0.18 - Percent of CPU this job got: 99% - Elapsed (wall clock) time (h:mm:ss or m:ss): 0:06.43 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 339084 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 150127 - Voluntary context switches: 1 - Involuntary context switches: 62 - Swaps: 0 - File system inputs: 0 - File system outputs: 0 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/sphere_3_192.ripser-no-emergent.txt b/benchmarks/output/sphere_3_192.ripser-no-emergent.txt deleted file mode 100644 index 37134ce..0000000 --- a/benchmarks/output/sphere_3_192.ripser-no-emergent.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "ripser sphere_3_192_points.dat --format point-cloud --dim 2" - User time (seconds): 5.49 - System time (seconds): 0.06 - Percent of CPU this job got: 99% - Elapsed (wall clock) time (h:mm:ss or m:ss): 0:05.56 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 201136 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 66913 - Voluntary context switches: 1 - Involuntary context switches: 62 - Swaps: 0 - File system inputs: 0 - File system outputs: 0 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/sphere_3_192.ripser-store-reduced.txt b/benchmarks/output/sphere_3_192.ripser-store-reduced.txt deleted file mode 100644 index 22e6702..0000000 --- a/benchmarks/output/sphere_3_192.ripser-store-reduced.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "ripser sphere_3_192_points.dat --format point-cloud --dim 2" - User time (seconds): 13.80 - System time (seconds): 1.77 - Percent of CPU this job got: 99% - Elapsed (wall clock) time (h:mm:ss or m:ss): 0:15.57 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 4288268 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 1860885 - Voluntary context switches: 1 - Involuntary context switches: 240 - Swaps: 0 - File system inputs: 0 - File system outputs: 0 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/sphere_3_192.ripser-use-reduced.txt b/benchmarks/output/sphere_3_192.ripser-use-reduced.txt deleted file mode 100644 index 66d80ac..0000000 --- a/benchmarks/output/sphere_3_192.ripser-use-reduced.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "ripser sphere_3_192_points.dat --format point-cloud --dim 2" - User time (seconds): 13.58 - System time (seconds): 1.76 - Percent of CPU this job got: 99% - Elapsed (wall clock) time (h:mm:ss or m:ss): 0:15.34 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 4288276 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 1865102 - Voluntary context switches: 1 - Involuntary context switches: 193 - Swaps: 0 - File system inputs: 0 - File system outputs: 0 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 diff --git a/benchmarks/output/sphere_3_192.ripser.txt b/benchmarks/output/sphere_3_192.ripser.txt deleted file mode 100644 index d6f9446..0000000 --- a/benchmarks/output/sphere_3_192.ripser.txt +++ /dev/null @@ -1,23 +0,0 @@ - Command being timed: "ripser sphere_3_192_points.dat --format point-cloud --dim 2" - User time (seconds): 1.04 - System time (seconds): 0.04 - Percent of CPU this job got: 99% - Elapsed (wall clock) time (h:mm:ss or m:ss): 0:01.08 - Average shared text size (kbytes): 0 - Average unshared data size (kbytes): 0 - Average stack size (kbytes): 0 - Average total size (kbytes): 0 - Maximum resident set size (kbytes): 201136 - Average resident set size (kbytes): 0 - Major (requiring I/O) page faults: 0 - Minor (reclaiming a frame) page faults: 66924 - Voluntary context switches: 1 - Involuntary context switches: 57 - Swaps: 0 - File system inputs: 0 - File system outputs: 0 - Socket messages sent: 0 - Socket messages received: 0 - Signals delivered: 0 - Page size (bytes): 4096 - Exit status: 0 -- cgit v1.2.3