Merge remote-tracking branch 'upstream/master'

11 files changed, 2 insertions, 42 deletions

diff --git a/src/Bitmap_cubical_complex/example/CMakeLists.txt b/src/Bitmap_cubical_complex/example/CMakeLists.txt
index dc659f2d..0ff290ef 100644
--- a/src/Bitmap_cubical_complex/example/CMakeLists.txt
+++ b/src/Bitmap_cubical_complex/example/CMakeLists.txt
@@ -6,5 +6,3 @@ if (TBB_FOUND)
 endif()
 add_test(NAME Bitmap_cubical_complex_example_random COMMAND $<TARGET_FILE:Random_bitmap_cubical_complex>
     "2" "100" "100")
-
-install(TARGETS Random_bitmap_cubical_complex DESTINATION bin)
diff --git a/src/Nerve_GIC/example/CMakeLists.txt b/src/Nerve_GIC/example/CMakeLists.txt
index 1667472f..4b0f4677 100644
--- a/src/Nerve_GIC/example/CMakeLists.txt
+++ b/src/Nerve_GIC/example/CMakeLists.txt
@@ -22,7 +22,4 @@ if (NOT CGAL_VERSION VERSION_LESS 4.11.0)
       "${CMAKE_CURRENT_BINARY_DIR}/lucky_cat.off"
       "${CMAKE_CURRENT_BINARY_DIR}/lucky_cat_PCA1")
 
-  install(TARGETS CoordGIC DESTINATION bin)
-  install(TARGETS FuncGIC DESTINATION bin)
-
 endif (NOT CGAL_VERSION VERSION_LESS 4.11.0)
diff --git a/src/Persistence_representations/example/CMakeLists.txt b/src/Persistence_representations/example/CMakeLists.txt
index a7c6ef39..997f85dc 100644
--- a/src/Persistence_representations/example/CMakeLists.txt
+++ b/src/Persistence_representations/example/CMakeLists.txt
@@ -3,30 +3,24 @@ project(Persistence_representations_example)
 add_executable ( Persistence_representations_example_landscape_on_grid persistence_landscape_on_grid.cpp )
 add_test(NAME Persistence_representations_example_landscape_on_grid
     COMMAND $<TARGET_FILE:Persistence_representations_example_landscape_on_grid>)
-install(TARGETS Persistence_representations_example_landscape_on_grid DESTINATION bin)
 
 add_executable ( Persistence_representations_example_landscape persistence_landscape.cpp )
 add_test(NAME Persistence_representations_example_landscape
     COMMAND $<TARGET_FILE:Persistence_representations_example_landscape>)
-install(TARGETS Persistence_representations_example_landscape DESTINATION bin)
 
 add_executable ( Persistence_representations_example_intervals persistence_intervals.cpp )
 add_test(NAME Persistence_representations_example_intervals
     COMMAND $<TARGET_FILE:Persistence_representations_example_intervals>
     "${CMAKE_SOURCE_DIR}/data/persistence_diagram/first.pers")
-install(TARGETS Persistence_representations_example_intervals DESTINATION bin)
 
 add_executable ( Persistence_representations_example_vectors persistence_vectors.cpp )
 add_test(NAME Persistence_representations_example_vectors
     COMMAND $<TARGET_FILE:Persistence_representations_example_vectors>)
-install(TARGETS Persistence_representations_example_vectors DESTINATION bin)
 
 add_executable ( Persistence_representations_example_heat_maps persistence_heat_maps.cpp )
 add_test(NAME Persistence_representations_example_heat_maps
     COMMAND $<TARGET_FILE:Persistence_representations_example_heat_maps>)
-install(TARGETS Persistence_representations_example_heat_maps DESTINATION bin)
 
 add_executable ( Sliced_Wasserstein sliced_wasserstein.cpp )
 add_test(NAME Sliced_Wasserstein
     COMMAND $<TARGET_FILE:Sliced_Wasserstein>)
-install(TARGETS Sliced_Wasserstein DESTINATION bin)
diff --git a/src/Persistent_cohomology/example/CMakeLists.txt b/src/Persistent_cohomology/example/CMakeLists.txt
index d6a92ed6..c68c6524 100644
--- a/src/Persistent_cohomology/example/CMakeLists.txt
+++ b/src/Persistent_cohomology/example/CMakeLists.txt
@@ -5,7 +5,6 @@ if (TBB_FOUND)
   target_link_libraries(plain_homology ${TBB_LIBRARIES})
 endif()
 add_test(NAME Persistent_cohomology_example_plain_homology COMMAND $<TARGET_FILE:plain_homology>)
-install(TARGETS plain_homology DESTINATION bin)
 
 add_executable(persistence_from_simple_simplex_tree persistence_from_simple_simplex_tree.cpp)
 if (TBB_FOUND)
@@ -13,7 +12,6 @@ if (TBB_FOUND)
 endif()
 add_test(NAME Persistent_cohomology_example_from_simple_simplex_tree COMMAND $<TARGET_FILE:persistence_from_simple_simplex_tree>
     "1" "0")
-install(TARGETS persistence_from_simple_simplex_tree DESTINATION bin)
 
 if(TARGET Boost::program_options)
   add_executable(rips_persistence_step_by_step rips_persistence_step_by_step.cpp)
@@ -23,7 +21,6 @@ if(TARGET Boost::program_options)
   endif()
   add_test(NAME Persistent_cohomology_example_from_rips_step_by_step_on_tore_3D COMMAND $<TARGET_FILE:rips_persistence_step_by_step>
       "${CMAKE_SOURCE_DIR}/data/points/tore3D_1307.off" "-r" "0.25" "-m" "0.5" "-d" "3" "-p" "3")
-  install(TARGETS rips_persistence_step_by_step DESTINATION bin)
 endif()
 
 if(TARGET Boost::program_options)
@@ -34,7 +31,6 @@ if(TARGET Boost::program_options)
   endif()
   add_test(NAME Persistent_cohomology_example_via_boundary_matrix COMMAND $<TARGET_FILE:rips_persistence_via_boundary_matrix>
       "${CMAKE_SOURCE_DIR}/data/points/Kl.off" "-r" "0.16" "-d" "3" "-p" "3" "-m" "100")
-  install(TARGETS rips_persistence_via_boundary_matrix DESTINATION bin)
 endif()
 
 if(TARGET Boost::program_options)
@@ -47,7 +43,6 @@ if(TARGET Boost::program_options)
       "${CMAKE_SOURCE_DIR}/data/filtered_simplicial_complex/bunny_5000_complex.fsc" "-p" "2" "-m" "0")
   add_test(NAME Persistent_cohomology_example_from_file_3_3_100 COMMAND $<TARGET_FILE:persistence_from_file>
       "${CMAKE_SOURCE_DIR}/data/filtered_simplicial_complex/bunny_5000_complex.fsc" "-p" "3" "-m" "100")
-  install(TARGETS persistence_from_file DESTINATION bin)
 endif()
 
 if(GMP_FOUND)
@@ -61,7 +56,6 @@ if(GMP_FOUND)
       endif(TBB_FOUND)
       add_test(NAME Persistent_cohomology_example_multifield_2_71 COMMAND $<TARGET_FILE:rips_multifield_persistence>
           "${CMAKE_SOURCE_DIR}/data/points/tore3D_1307.off" "-r" "0.25" "-m" "0.5" "-d" "3" "-p" "2" "-q" "71")
-      install(TARGETS rips_multifield_persistence DESTINATION bin)
     endif()
   endif(GMPXX_FOUND)
 endif(GMP_FOUND)
@@ -73,5 +67,4 @@ if (NOT CGAL_WITH_EIGEN3_VERSION VERSION_LESS 4.11.0)
     target_link_libraries(custom_persistence_sort ${TBB_LIBRARIES})
   endif(TBB_FOUND)
   add_test(NAME Persistent_cohomology_example_custom_persistence_sort COMMAND $<TARGET_FILE:custom_persistence_sort>)
-  install(TARGETS custom_persistence_sort DESTINATION bin)
 endif (NOT CGAL_WITH_EIGEN3_VERSION VERSION_LESS 4.11.0)
diff --git a/src/Rips_complex/example/CMakeLists.txt b/src/Rips_complex/example/CMakeLists.txt
index 244a93ec..206f4c11 100644
--- a/src/Rips_complex/example/CMakeLists.txt
+++ b/src/Rips_complex/example/CMakeLists.txt
@@ -72,8 +72,3 @@ if (DIFF_PATH)
 
 endif()
 
-install(TARGETS Rips_complex_example_from_off DESTINATION bin)
-install(TARGETS Rips_complex_example_one_skeleton_from_points DESTINATION bin)
-install(TARGETS Rips_complex_example_one_skeleton_from_distance_matrix DESTINATION bin)
-install(TARGETS Rips_complex_example_from_csv_distance_matrix DESTINATION bin)
-install(TARGETS Rips_complex_example_one_skeleton_rips_from_correlation_matrix DESTINATION bin)
diff --git a/src/Skeleton_blocker/example/CMakeLists.txt b/src/Skeleton_blocker/example/CMakeLists.txt
index 0e5d2f11..456612df 100644
--- a/src/Skeleton_blocker/example/CMakeLists.txt
+++ b/src/Skeleton_blocker/example/CMakeLists.txt
@@ -7,7 +7,3 @@ add_executable(Skeleton_blocker_example_link Skeleton_blocker_link.cpp)
 add_test(NAME Skeleton_blocker_example_from_simplices COMMAND $<TARGET_FILE:Skeleton_blocker_example_from_simplices>)
 add_test(NAME Skeleton_blocker_example_iteration COMMAND $<TARGET_FILE:Skeleton_blocker_example_iteration>)
 add_test(NAME Skeleton_blocker_example_link COMMAND $<TARGET_FILE:Skeleton_blocker_example_link>)
-
-install(TARGETS Skeleton_blocker_example_from_simplices DESTINATION bin)
-install(TARGETS Skeleton_blocker_example_iteration DESTINATION bin)
-install(TARGETS Skeleton_blocker_example_link DESTINATION bin)
diff --git a/src/Spatial_searching/example/CMakeLists.txt b/src/Spatial_searching/example/CMakeLists.txt
index eeb3e85f..308afa00 100644
--- a/src/Spatial_searching/example/CMakeLists.txt
+++ b/src/Spatial_searching/example/CMakeLists.txt
@@ -5,5 +5,4 @@ if(NOT CGAL_WITH_EIGEN3_VERSION VERSION_LESS 4.11.0)
   target_link_libraries(Spatial_searching_example_spatial_searching ${CGAL_LIBRARY})
   add_test(NAME Spatial_searching_example_spatial_searching
       COMMAND $<TARGET_FILE:Spatial_searching_example_spatial_searching>)
-  install(TARGETS Spatial_searching_example_spatial_searching DESTINATION bin)
 endif(NOT CGAL_WITH_EIGEN3_VERSION VERSION_LESS 4.11.0)
diff --git a/src/Subsampling/example/CMakeLists.txt b/src/Subsampling/example/CMakeLists.txt
index 28aab103..dfac055c 100644
--- a/src/Subsampling/example/CMakeLists.txt
+++ b/src/Subsampling/example/CMakeLists.txt
@@ -14,9 +14,4 @@ if(NOT CGAL_WITH_EIGEN3_VERSION VERSION_LESS 4.11.0)
   add_test(NAME Subsampling_example_sparsify_point_set
       COMMAND $<TARGET_FILE:Subsampling_example_sparsify_point_set>)
 
-  install(TARGETS Subsampling_example_pick_n_random_points DESTINATION bin)
-  install(TARGETS Subsampling_example_choose_n_farthest_points DESTINATION bin)
-  install(TARGETS Subsampling_example_custom_kernel DESTINATION bin)
-  install(TARGETS Subsampling_example_sparsify_point_set DESTINATION bin)
-
 endif(NOT CGAL_WITH_EIGEN3_VERSION VERSION_LESS 4.11.0)
diff --git a/src/Tangential_complex/example/CMakeLists.txt b/src/Tangential_complex/example/CMakeLists.txt
index cb1486a4..b66b5f39 100644
--- a/src/Tangential_complex/example/CMakeLists.txt
+++ b/src/Tangential_complex/example/CMakeLists.txt
@@ -15,6 +15,4 @@ if(NOT CGAL_WITH_EIGEN3_VERSION VERSION_LESS 4.11.0)
   add_test(NAME Tangential_complex_example_with_perturb
       COMMAND $<TARGET_FILE:Tangential_complex_example_with_perturb>)
 
-  install(TARGETS Tangential_complex_example_basic DESTINATION bin)
-  install(TARGETS Tangential_complex_example_with_perturb DESTINATION bin)
 endif(NOT CGAL_WITH_EIGEN3_VERSION VERSION_LESS 4.11.0)
diff --git a/src/Witness_complex/example/CMakeLists.txt b/src/Witness_complex/example/CMakeLists.txt
index 2659798e..5e9736ed 100644
--- a/src/Witness_complex/example/CMakeLists.txt
+++ b/src/Witness_complex/example/CMakeLists.txt
@@ -7,8 +7,6 @@ endif()
 add_test(NAME Witness_complex_example_nearest_landmark_table
     COMMAND $<TARGET_FILE:Witness_complex_example_nearest_landmark_table>)
 
-install(TARGETS Witness_complex_example_nearest_landmark_table DESTINATION bin)
-
 # CGAL and Eigen3 are required for Euclidean version of Witness
 if(NOT CGAL_WITH_EIGEN3_VERSION VERSION_LESS 4.11.0)
   add_executable( Witness_complex_example_off example_witness_complex_off.cpp )
@@ -33,10 +31,5 @@ if(NOT CGAL_WITH_EIGEN3_VERSION VERSION_LESS 4.11.0)
   add_test(NAME Witness_complex_example_strong_off_test_torus
       COMMAND $<TARGET_FILE:Witness_complex_example_strong_off>
       "${CMAKE_SOURCE_DIR}/data/points/tore3D_1307.off" "20" "1.0" "3")
-      
-  install(TARGETS Witness_complex_example_off DESTINATION bin)
-  install(TARGETS Witness_complex_example_sphere DESTINATION bin)
-  install(TARGETS Witness_complex_example_strong_off DESTINATION bin)
-
 
 endif(NOT CGAL_WITH_EIGEN3_VERSION VERSION_LESS 4.11.0)
diff --git a/src/python/gudhi/simplex_tree.pyx b/src/python/gudhi/simplex_tree.pyx
index c671da56..813dc5c2 100644
--- a/src/python/gudhi/simplex_tree.pyx
+++ b/src/python/gudhi/simplex_tree.pyx
@@ -287,6 +287,8 @@ cdef class SimplexTree:
 
     def get_boundaries(self, simplex):
         """This function returns a generator with the boundaries of a given N-simplex.
+        If you do not need the filtration values, the boundary can also be obtained as
+        :code:`itertools.combinations(simplex,len(simplex)-1)`.
 
         :param simplex: The N-simplex, represented by a list of vertex.
         :type simplex: list of int.