CMake generates how_to_cite_gudhi.bib to auto update version

2 files changed, 41 insertions, 36 deletions

diff --git a/biblio/how_to_cite_gudhi.bib b/biblio/how_to_cite_gudhi.bib.in
index cba94d4d..23a37956 100644
--- a/biblio/how_to_cite_gudhi.bib
+++ b/biblio/how_to_cite_gudhi.bib.in
@@ -2,18 +2,18 @@
 , title        = "{GUDHI} User and Reference Manual"
 , author      = "{The GUDHI Project}"
 , publisher     = "{GUDHI Editorial Board}"
-, edition =     "{3.0.0}"
+, edition =     "{@GUDHI_VERSION@}"
 , year         = 2019
-, url =    "https://gudhi.inria.fr/doc/3.0.0/"
+, url =    "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/"
 }
 
 @incollection{gudhi:FilteredComplexes
 , author =  "Cl\'ement Maria"
 , title =   "Filtered Complexes"
 , publisher =  "{GUDHI Editorial Board}"
-, edition =     "{3.0.0}"
+, edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/3.0.0/group__simplex__tree.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__simplex__tree.html"
 , year =        2019
 }
 
@@ -21,9 +21,9 @@
 , author =  "Cl\'ement Maria"
 , title =   "Persistent Cohomology"
 , publisher =  "{GUDHI Editorial Board}"
-, edition =     "{3.0.0}"
+, edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/3.0.0/group__persistent__cohomology.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__persistent__cohomology.html"
 , year =        2019
 }
 
@@ -31,9 +31,9 @@
 , author =  "David Salinas"
 , title =   "Contraction"
 , publisher =  "{GUDHI Editorial Board}"
-, edition =     "{3.0.0}"
+, edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/3.0.0/group__contr.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__contr.html"
 , year =        2019
 }
 
@@ -41,9 +41,9 @@
 , author =  "David Salinas"
 , title =   "Skeleton-Blocker"
 , publisher =  "{GUDHI Editorial Board}"
-, edition =     "{3.0.0}"
+, edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/3.0.0/group__skbl.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__skbl.html"
 , year =        2019
 }
 
@@ -51,9 +51,9 @@
 , author =  "Vincent Rouvreau"
 , title =   "Alpha complex"
 , publisher =  "{GUDHI Editorial Board}"
-, edition =     "{3.0.0}"
+, edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/3.0.0/group__alpha__complex.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__alpha__complex.html"
 , year =        2019
 }
 
@@ -61,9 +61,9 @@
 , author =  "Pawel Dlotko"
 , title =   "Cubical complex"
 , publisher =  "{GUDHI Editorial Board}"
-, edition =     "{3.0.0}"
+, edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/3.0.0/group__cubical__complex.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__cubical__complex.html"
 , year =        2019
 }
 
@@ -71,9 +71,9 @@
 , author =  "Siargey Kachanovich"
 , title =   "Witness complex"
 , publisher =  "{GUDHI Editorial Board}"
-, edition =     "{3.0.0}"
+, edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/3.0.0/group__witness__complex.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__witness__complex.html"
 , year =        2019
 }
 
@@ -81,9 +81,9 @@
 , author =  "Cl\'ement Jamin, Siargey Kachanovich"
 , title =   "Subsampling"
 , publisher =  "{GUDHI Editorial Board}"
-, edition =     "{3.0.0}"
+, edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/3.0.0/group__subsampling.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__subsampling.html"
 , year =        2019
 }
 
@@ -91,9 +91,9 @@
 , author =  "Cl\'ement Jamin"
 , title =   "Spatial searching"
 , publisher =  "{GUDHI Editorial Board}"
-, edition =     "{3.0.0}"
+, edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/3.0.0/group__spatial__searching.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__spatial__searching.html"
 , year =        2019
 }
 
@@ -101,9 +101,9 @@
 , author =  "Cl\'ement Jamin"
 , title =   "Tangential complex"
 , publisher =  "{GUDHI Editorial Board}"
-, edition =     "{3.0.0}"
+, edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/3.0.0/group__tangential__complex.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__tangential__complex.html"
 , year =        2019
 }
 
@@ -111,9 +111,9 @@
 , author =  "Cl\'ement Maria, Pawel Dlotko, Vincent Rouvreau, Marc Glisse"
 , title =   "Rips complex"
 , publisher =  "{GUDHI Editorial Board}"
-, edition =     "{3.0.0}"
+, edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/3.0.0/group__rips__complex.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__rips__complex.html"
 , year =        2019
 }
 
@@ -121,9 +121,9 @@
 , author =  "Fran{{\c{c}}ois Godi"
 , title =   "Bottleneck distance"
 , publisher =  "{GUDHI Editorial Board}"
-, edition =     "{3.0.0}"
+, edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/3.0.0/group__bottleneck__distance.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__bottleneck__distance.html"
 , year =        2019
 }
 
@@ -131,9 +131,9 @@
 , author =  "Vincent Rouvreau"
 , title =   "Cython interface"
 , publisher =  "{GUDHI Editorial Board}"
-, edition =     "{3.0.0}"
+, edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/python/3.0.0/"
+, url = "https://gudhi.inria.fr/python/@GUDHI_VERSION@/"
 , year =        2019
 }
 
@@ -141,9 +141,9 @@
 , author =  "Mathieu Carri\`ere"
 , title =   "Cover complex"
 , publisher =  "{GUDHI Editorial Board}"
-, edition =     "{3.0.0}"
+, edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/3.0.0/group__cover__complex.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__cover__complex.html"
 , year =        2019
 }
 
@@ -151,8 +151,8 @@
 , author =  "Pawel Dlotko"
 , title =   "Persistence representations"
 , publisher =  "{GUDHI Editorial Board}"
-, edition =     "{3.0.0}"
+, edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/3.0.0/group___persistence__representations.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group___persistence__representations.html"
 , year =        2019
 }
diff --git a/src/cmake/modules/GUDHI_user_version_target.cmake b/src/cmake/modules/GUDHI_user_version_target.cmake
index f75fb19e..c179220c 100644
--- a/src/cmake/modules/GUDHI_user_version_target.cmake
+++ b/src/cmake/modules/GUDHI_user_version_target.cmake
@@ -18,12 +18,19 @@ foreach(GUDHI_MODULE ${GUDHI_MODULES_FULL_LIST})
   set(GUDHI_DOXYGEN_IMAGE_PATH "${GUDHI_DOXYGEN_IMAGE_PATH}    doc/${GUDHI_MODULE}/ \\  \n")
 endforeach(GUDHI_MODULE ${GUDHI_MODULES_FULL_LIST})
 
-# Generate setup.py file to cythonize Gudhi - This file must be named setup.py by convention
+# Generate Doxyfile for Doxygen - cf. root CMakeLists.txt for explanation
 configure_file(${CMAKE_SOURCE_DIR}/src/Doxyfile.in "${CMAKE_CURRENT_BINARY_DIR}/src/Doxyfile" @ONLY)
-
 add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
         copy ${CMAKE_CURRENT_BINARY_DIR}/src/Doxyfile ${GUDHI_USER_VERSION_DIR}/Doxyfile)
 
+# Generate bib files for Doxygen - cf. root CMakeLists.txt for explanation
+configure_file(${CMAKE_SOURCE_DIR}/biblio/how_to_cite_gudhi.bib.in "${CMAKE_CURRENT_BINARY_DIR}/biblio/how_to_cite_gudhi.bib" @ONLY)
+file(COPY "${CMAKE_SOURCE_DIR}/biblio/how_to_cite_cgal.bib" DESTINATION "${CMAKE_CURRENT_BINARY_DIR}/biblio/")
+file(COPY "${CMAKE_SOURCE_DIR}/biblio/bibliography.bib" DESTINATION "${CMAKE_CURRENT_BINARY_DIR}/biblio/")
+# Copy biblio directory for user version
+add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
+                   copy_directory ${CMAKE_CURRENT_BINARY_DIR}/biblio ${GUDHI_USER_VERSION_DIR}/biblio)
+
 add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
                    copy ${CMAKE_SOURCE_DIR}/Conventions.txt ${GUDHI_USER_VERSION_DIR}/Conventions.txt)
 add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
@@ -40,8 +47,6 @@ add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
                    copy ${CMAKE_SOURCE_DIR}/CMakeGUDHIVersion.txt ${GUDHI_USER_VERSION_DIR}/CMakeGUDHIVersion.txt)
 
 add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
-                   copy_directory ${CMAKE_SOURCE_DIR}/biblio ${GUDHI_USER_VERSION_DIR}/biblio)
-add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
                    copy_directory ${CMAKE_SOURCE_DIR}/${GUDHI_PYTHON_PATH} ${GUDHI_USER_VERSION_DIR}/python)
 add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
                    copy_directory ${CMAKE_SOURCE_DIR}/data ${GUDHI_USER_VERSION_DIR}/data)