diff options
author | Marc Glisse <marc.glisse@inria.fr> | 2022-11-13 20:40:17 +0100 |
---|---|---|
committer | Marc Glisse <marc.glisse@inria.fr> | 2022-11-15 17:33:15 +0100 |
commit | 940c5bc058970edbe908e0c7f4c655fbca94a87b (patch) | |
tree | ea28441c43bee094455eceaf2515cc84914d19d1 | |
parent | 969f3daea0eed3deb26c47365b1a03a9629d48b5 (diff) |
Update to Hera 2
m--------- | ext/hera | 0 | ||||
-rw-r--r-- | src/cmake/modules/GUDHI_submodules.cmake | 6 | ||||
-rw-r--r-- | src/cmake/modules/GUDHI_user_version_target.cmake | 5 | ||||
-rw-r--r-- | src/python/gudhi/hera/bottleneck.cc | 2 | ||||
-rw-r--r-- | src/python/gudhi/hera/wasserstein.cc | 2 | ||||
-rw-r--r-- | src/python/setup.py.in | 6 |
6 files changed, 8 insertions, 13 deletions
diff --git a/ext/hera b/ext/hera -Subproject b528c4067a8aac346eb307d3c23b82d5953cfe2 +Subproject 8bfdd4bd32f005c18b5c75c502b987de552d6e4 diff --git a/src/cmake/modules/GUDHI_submodules.cmake b/src/cmake/modules/GUDHI_submodules.cmake index 78b045bd..c844386d 100644 --- a/src/cmake/modules/GUDHI_submodules.cmake +++ b/src/cmake/modules/GUDHI_submodules.cmake @@ -1,5 +1,3 @@ # For those who dislike bundled dependencies, this indicates where to find a preinstalled Hera. -set(HERA_WASSERSTEIN_INTERNAL_INCLUDE_DIR ${CMAKE_SOURCE_DIR}/ext/hera/wasserstein/include) -set(HERA_WASSERSTEIN_INCLUDE_DIR ${HERA_WASSERSTEIN_INTERNAL_INCLUDE_DIR} CACHE PATH "Directory where one can find Hera's wasserstein.h") -set(HERA_BOTTLENECK_INTERNAL_INCLUDE_DIR ${CMAKE_SOURCE_DIR}/ext/hera/bottleneck/include) -set(HERA_BOTTLENECK_INCLUDE_DIR ${HERA_BOTTLENECK_INTERNAL_INCLUDE_DIR} CACHE PATH "Directory where one can find Hera's bottleneck.h")
\ No newline at end of file +set(HERA_INTERNAL_INCLUDE_DIR ${CMAKE_SOURCE_DIR}/ext/hera/include) +set(HERA_INCLUDE_DIR ${HERA_INTERNAL_INCLUDE_DIR} CACHE PATH "Directory where one can find hera/{wasserstein.h,bottleneck.h}") diff --git a/src/cmake/modules/GUDHI_user_version_target.cmake b/src/cmake/modules/GUDHI_user_version_target.cmake index 4487ad86..2144ff6f 100644 --- a/src/cmake/modules/GUDHI_user_version_target.cmake +++ b/src/cmake/modules/GUDHI_user_version_target.cmake @@ -60,10 +60,9 @@ add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E copy_directory ${CMAKE_SOURCE_DIR}/src/GudhUI ${GUDHI_USER_VERSION_DIR}/GudhUI) -if(HERA_WASSERSTEIN_INCLUDE_DIR STREQUAL HERA_WASSERSTEIN_INTERNAL_INCLUDE_DIR OR - HERA_BOTTLENECK_INCLUDE_DIR STREQUAL HERA_BOTTLENECK_INTERNAL_INCLUDE_DIR) +if(HERA_INCLUDE_DIR STREQUAL HERA_INTERNAL_INCLUDE_DIR) add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - copy_directory ${CMAKE_SOURCE_DIR}/ext/hera ${GUDHI_USER_VERSION_DIR}/ext/hera) + copy_directory ${CMAKE_SOURCE_DIR}/ext/hera/include ${GUDHI_USER_VERSION_DIR}/ext/hera/include) endif() set(GUDHI_DIRECTORIES "doc;example;concept;utilities") diff --git a/src/python/gudhi/hera/bottleneck.cc b/src/python/gudhi/hera/bottleneck.cc index 0cb562ce..ec461f7c 100644 --- a/src/python/gudhi/hera/bottleneck.cc +++ b/src/python/gudhi/hera/bottleneck.cc @@ -16,7 +16,7 @@ using py::ssize_t; #endif -#include <bottleneck.h> // Hera +#include <hera/bottleneck.h> // Hera double bottleneck_distance(Dgm d1, Dgm d2, double delta) { diff --git a/src/python/gudhi/hera/wasserstein.cc b/src/python/gudhi/hera/wasserstein.cc index fa0cf8aa..b1fce1e7 100644 --- a/src/python/gudhi/hera/wasserstein.cc +++ b/src/python/gudhi/hera/wasserstein.cc @@ -8,7 +8,7 @@ * - YYYY/MM Author: Description of the modification */ -#include <wasserstein.h> // Hera +#include <hera/wasserstein.h> // Hera #include <pybind11_diagram_utils.h> diff --git a/src/python/setup.py.in b/src/python/setup.py.in index 2c67c2c5..1ecbe985 100644 --- a/src/python/setup.py.in +++ b/src/python/setup.py.in @@ -48,10 +48,8 @@ ext_modules = cythonize(ext_modules, compiler_directives={'language_level': '3'} for module in pybind11_modules: my_include_dirs = include_dirs + [pybind11.get_include(False), pybind11.get_include(True)] - if module == 'hera/wasserstein': - my_include_dirs = ['@HERA_WASSERSTEIN_INCLUDE_DIR@'] + my_include_dirs - elif module == 'hera/bottleneck': - my_include_dirs = ['@HERA_BOTTLENECK_INCLUDE_DIR@'] + my_include_dirs + if module.startswith('hera/'): + my_include_dirs = ['@HERA_INCLUDE_DIR@'] + my_include_dirs ext_modules.append(Extension( 'gudhi.' + module.replace('/', '.'), sources = [source_dir + module + '.cc'], |