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authormathieu <mathieu.carriere3@gmail.com>2019-12-10 14:24:52 -0500
committermathieu <mathieu.carriere3@gmail.com>2019-12-10 14:24:52 -0500
commit5ecc15ba30e7a20604d50c1fdec9e7da2de64898 (patch)
treea67f10e0878582cd55ae8480377f1b39a3b5a3a4
parentce58cc97866605fe64df479e96d455e90f56f8e2 (diff)
fixed doc and examples
-rw-r--r--src/python/doc/representations.rst4
-rwxr-xr-xsrc/python/example/diagram_vectorizations_distances_kernels.py6
2 files changed, 5 insertions, 5 deletions
diff --git a/src/python/doc/representations.rst b/src/python/doc/representations.rst
index b338f7f0..409e97da 100644
--- a/src/python/doc/representations.rst
+++ b/src/python/doc/representations.rst
@@ -10,7 +10,7 @@ Representations manual
This module, originally available at https://github.com/MathieuCarriere/sklearn-tda and named sklearn_tda, aims at bridging the gap between persistence diagrams and machine learning, by providing implementations of most of the vector representations for persistence diagrams in the literature, in a scikit-learn format. More specifically, it provides tools, using the scikit-learn standard interface, to compute distances and kernels on persistence diagrams, and to convert these diagrams into vectors in Euclidean space.
-A diagram is represented as a numpy array of shape (n,2), as can be obtained from `SimplexTree.persistence_intervals_in_dimension` for instance. Points at infinity are represented as a numpy array of shape (n,1), storing only the birth time.
+A diagram is represented as a numpy array of shape (n,2), as can be obtained from :func:`~gudhi.SimplexTree.persistence_intervals_in_dimension` for instance. Points at infinity are represented as a numpy array of shape (n,1), storing only the birth time.
A small example is provided
@@ -66,4 +66,4 @@ The output is:
.. testoutput::
- [[0. 1.25707872 2.51415744 1.88561808 0.7856742 2.04275292 3.29983165 2.51415744 1.25707872 0. 0. 0. 0.31426968 0. 0.62853936 0. 0. 0.31426968 1.25707872 0. ]]
+ [[1.02851895 2.05703791 2.57129739 1.54277843 0.89995409 1.92847304 2.95699199 3.08555686 0. 0.64282435 0. 0. 0.51425948 0. 0. 0. ]]
diff --git a/src/python/example/diagram_vectorizations_distances_kernels.py b/src/python/example/diagram_vectorizations_distances_kernels.py
index f777984c..0ea4ba79 100755
--- a/src/python/example/diagram_vectorizations_distances_kernels.py
+++ b/src/python/example/diagram_vectorizations_distances_kernels.py
@@ -26,9 +26,9 @@ plt.show()
LS = Landscape(resolution=1000)
L = LS.fit_transform(diags)
-plt.plot(L[0][:999])
-plt.plot(L[0][999:2*999])
-plt.plot(L[0][2*999:3*999])
+plt.plot(L[0][:998])
+plt.plot(L[0][998:2*998])
+plt.plot(L[0][2*998:3*998])
plt.title("Landscape")
plt.show()