rename simplex_tree variable names

git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1856 636b058d-ea47-450e-bf9e-a15bfbe3eedb

Former-commit-id: aa283b26d5c31577698dcec271e7b0ef95b4bd0f

4 files changed, 32 insertions, 32 deletions

diff --git a/src/Rips_complex/example/example_one_skeleton_rips_from_distance_matrix.cpp b/src/Rips_complex/example/example_one_skeleton_rips_from_distance_matrix.cpp
index 4d577822..02bffe0d 100644
--- a/src/Rips_complex/example/example_one_skeleton_rips_from_distance_matrix.cpp
+++ b/src/Rips_complex/example/example_one_skeleton_rips_from_distance_matrix.cpp
@@ -44,23 +44,23 @@ int main(int argc, char **argv) {
   // ----------------------------------------------------------------------------
   Rips_complex rips_complex_from_points(distances, threshold);
 
-  Simplex_tree simplex;
-  if (rips_complex_from_points.create_complex(simplex, 1)) {
+  Simplex_tree stree;
+  if (rips_complex_from_points.create_complex(stree, 1)) {
     // ----------------------------------------------------------------------------
     // Display information about the one skeleton rips complex
     // ----------------------------------------------------------------------------
-    std::cout << "Rips complex is of dimension " << simplex.dimension() <<
-        " - " << simplex.num_simplices() << " simplices - " <<
-        simplex.num_vertices() << " vertices." << std::endl;
+    std::cout << "Rips complex is of dimension " << stree.dimension() <<
+        " - " << stree.num_simplices() << " simplices - " <<
+        stree.num_vertices() << " vertices." << std::endl;
 
     std::cout << "Iterator on rips complex simplices in the filtration order, with [filtration value]:" <<
         std::endl;
-    for (auto f_simplex : simplex.filtration_simplex_range()) {
+    for (auto f_simplex : stree.filtration_simplex_range()) {
       std::cout << "   ( ";
-      for (auto vertex : simplex.simplex_vertex_range(f_simplex)) {
+      for (auto vertex : stree.simplex_vertex_range(f_simplex)) {
         std::cout << vertex << " ";
       }
-      std::cout << ") -> " << "[" << simplex.filtration(f_simplex) << "] ";
+      std::cout << ") -> " << "[" << stree.filtration(f_simplex) << "] ";
       std::cout << std::endl;
     }
   }
diff --git a/src/Rips_complex/example/example_one_skeleton_rips_from_points.cpp b/src/Rips_complex/example/example_one_skeleton_rips_from_points.cpp
index 9e90c72e..efbcd88e 100644
--- a/src/Rips_complex/example/example_one_skeleton_rips_from_points.cpp
+++ b/src/Rips_complex/example/example_one_skeleton_rips_from_points.cpp
@@ -39,23 +39,23 @@ int main(int argc, char **argv) {
   // ----------------------------------------------------------------------------
   Rips_complex rips_complex_from_points(points, threshold, Euclidean_distance());
 
-  Simplex_tree simplex;
-  if (rips_complex_from_points.create_complex(simplex, 1)) {
+  Simplex_tree stree;
+  if (rips_complex_from_points.create_complex(stree, 1)) {
     // ----------------------------------------------------------------------------
     // Display information about the one skeleton rips complex
     // ----------------------------------------------------------------------------
-    std::cout << "Rips complex is of dimension " << simplex.dimension() <<
-        " - " << simplex.num_simplices() << " simplices - " <<
-        simplex.num_vertices() << " vertices." << std::endl;
+    std::cout << "Rips complex is of dimension " << stree.dimension() <<
+        " - " << stree.num_simplices() << " simplices - " <<
+        stree.num_vertices() << " vertices." << std::endl;
 
     std::cout << "Iterator on rips complex simplices in the filtration order, with [filtration value]:" <<
         std::endl;
-    for (auto f_simplex : simplex.filtration_simplex_range()) {
+    for (auto f_simplex : stree.filtration_simplex_range()) {
       std::cout << "   ( ";
-      for (auto vertex : simplex.simplex_vertex_range(f_simplex)) {
+      for (auto vertex : stree.simplex_vertex_range(f_simplex)) {
         std::cout << vertex << " ";
       }
-      std::cout << ") -> " << "[" << simplex.filtration(f_simplex) << "] ";
+      std::cout << ") -> " << "[" << stree.filtration(f_simplex) << "] ";
       std::cout << std::endl;
     }
   }
diff --git a/src/Rips_complex/example/example_rips_complex_from_csv_distance_matrix_file.cpp b/src/Rips_complex/example/example_rips_complex_from_csv_distance_matrix_file.cpp
index 93160b1b..7cdaffdf 100644
--- a/src/Rips_complex/example/example_rips_complex_from_csv_distance_matrix_file.cpp
+++ b/src/Rips_complex/example/example_rips_complex_from_csv_distance_matrix_file.cpp
@@ -45,25 +45,25 @@ int main(int argc, char **argv) {
     streambufffer = std::cout.rdbuf();
   }
 
-  Simplex_tree simplex;
-  if (rips_complex_from_file.create_complex(simplex, dim_max)) {
+  Simplex_tree stree;
+  if (rips_complex_from_file.create_complex(stree, dim_max)) {
     std::ostream output_stream(streambufffer);
 
     // ----------------------------------------------------------------------------
     // Display information about the rips complex
     // ----------------------------------------------------------------------------
-    output_stream << "Rips complex is of dimension " << simplex.dimension() <<
-        " - " << simplex.num_simplices() << " simplices - " <<
-        simplex.num_vertices() << " vertices." << std::endl;
+    output_stream << "Rips complex is of dimension " << stree.dimension() <<
+        " - " << stree.num_simplices() << " simplices - " <<
+        stree.num_vertices() << " vertices." << std::endl;
 
     output_stream << "Iterator on rips complex simplices in the filtration order, with [filtration value]:" <<
         std::endl;
-    for (auto f_simplex : simplex.filtration_simplex_range()) {
+    for (auto f_simplex : stree.filtration_simplex_range()) {
       output_stream << "   ( ";
-      for (auto vertex : simplex.simplex_vertex_range(f_simplex)) {
+      for (auto vertex : stree.simplex_vertex_range(f_simplex)) {
         output_stream << vertex << " ";
       }
-      output_stream << ") -> " << "[" << simplex.filtration(f_simplex) << "] ";
+      output_stream << ") -> " << "[" << stree.filtration(f_simplex) << "] ";
       output_stream << std::endl;
     }
   }
diff --git a/src/Rips_complex/example/example_rips_complex_from_off_file.cpp b/src/Rips_complex/example/example_rips_complex_from_off_file.cpp
index 23e49add..8849d784 100644
--- a/src/Rips_complex/example/example_rips_complex_from_off_file.cpp
+++ b/src/Rips_complex/example/example_rips_complex_from_off_file.cpp
@@ -44,25 +44,25 @@ int main(int argc, char **argv) {
     streambufffer = std::cout.rdbuf();
   }
 
-  Simplex_tree simplex;
-  if (rips_complex_from_file.create_complex(simplex, dim_max)) {
+  Simplex_tree stree;
+  if (rips_complex_from_file.create_complex(stree, dim_max)) {
     std::ostream output_stream(streambufffer);
 
     // ----------------------------------------------------------------------------
     // Display information about the rips complex
     // ----------------------------------------------------------------------------
-    output_stream << "Rips complex is of dimension " << simplex.dimension() <<
-        " - " << simplex.num_simplices() << " simplices - " <<
-        simplex.num_vertices() << " vertices." << std::endl;
+    output_stream << "Rips complex is of dimension " << stree.dimension() <<
+        " - " << stree.num_simplices() << " simplices - " <<
+        stree.num_vertices() << " vertices." << std::endl;
 
     output_stream << "Iterator on rips complex simplices in the filtration order, with [filtration value]:" <<
         std::endl;
-    for (auto f_simplex : simplex.filtration_simplex_range()) {
+    for (auto f_simplex : stree.filtration_simplex_range()) {
       output_stream << "   ( ";
-      for (auto vertex : simplex.simplex_vertex_range(f_simplex)) {
+      for (auto vertex : stree.simplex_vertex_range(f_simplex)) {
         output_stream << vertex << " ";
       }
-      output_stream << ") -> " << "[" << simplex.filtration(f_simplex) << "] ";
+      output_stream << ") -> " << "[" << stree.filtration(f_simplex) << "] ";
       output_stream << std::endl;
     }
   }