Proposal for how_to_cite_gudhi update

1 files changed, 194 insertions, 40 deletions

diff --git a/biblio/how_to_cite_gudhi.bib.in b/biblio/how_to_cite_gudhi.bib.in
index 579dbf41..9dacd622 100644
--- a/biblio/how_to_cite_gudhi.bib.in
+++ b/biblio/how_to_cite_gudhi.bib.in
@@ -7,6 +7,16 @@
 , url =    "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/"
 }
 
+@incollection{gudhi:CubicalComplex
+, author =  "Pawel Dlotko"
+, title =   "Cubical complex"
+, publisher =  "{GUDHI Editorial Board}"
+, edition =     "{@GUDHI_VERSION@}"
+, booktitle =   "{GUDHI} User and Reference Manual"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__cubical__complex.html"
+, year =        @GUDHI_VERSION_YEAR@
+}
+
 @incollection{gudhi:FilteredComplexes
 , author =  "Cl\'ement Maria"
 , title =   "Filtered Complexes"
@@ -17,33 +27,33 @@
 , year =        @GUDHI_VERSION_YEAR@
 }
 
-@incollection{gudhi:PersistentCohomology
-, author =  "Cl\'ement Maria"
-, title =   "Persistent Cohomology"
+@incollection{gudhi:ToplexMap
+, author =  "Fran{{\c{c}}ois Godi"
+, title =   "Toplex map"
 , publisher =  "{GUDHI Editorial Board}"
 , edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__persistent__cohomology.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__toplex__map.html"
 , year =        @GUDHI_VERSION_YEAR@
 }
 
-@incollection{gudhi:Contraction
+@incollection{gudhi:SkeletonBlocker
 , author =  "David Salinas"
-, title =   "Contraction"
+, title =   "Skeleton-Blocker"
 , publisher =  "{GUDHI Editorial Board}"
 , edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__contr.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__skbl.html"
 , year =        @GUDHI_VERSION_YEAR@
 }
 
-@incollection{gudhi:SkeletonBlocker
+@incollection{gudhi:Contraction
 , author =  "David Salinas"
-, title =   "Skeleton-Blocker"
+, title =   "Contraction"
 , publisher =  "{GUDHI Editorial Board}"
 , edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__skbl.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__contr.html"
 , year =        @GUDHI_VERSION_YEAR@
 }
 
@@ -57,13 +67,33 @@
 , year =        @GUDHI_VERSION_YEAR@
 }
 
-@incollection{gudhi:CubicalComplex
-, author =  "Pawel Dlotko"
-, title =   "Cubical complex"
+@incollection{gudhi:CechComplex
+, author =  "Vincent Rouvreau"
+, title =   "\v{C}ech complex"
 , publisher =  "{GUDHI Editorial Board}"
 , edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__cubical__complex.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__cech__complex.html"
+, year =        @GUDHI_VERSION_YEAR@
+}
+
+@incollection{gudhi:RipsComplex
+, author =  "Cl\'ement Maria and Pawel Dlotko and Vincent Rouvreau and Marc Glisse"
+, title =   "Rips complex"
+, publisher =  "{GUDHI Editorial Board}"
+, edition =     "{@GUDHI_VERSION@}"
+, booktitle =   "{GUDHI} User and Reference Manual"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__rips__complex.html"
+, year =        @GUDHI_VERSION_YEAR@
+}
+
+@incollection{gudhi:Collapse
+, author =  "Siddharth Pritam and Marc Glisse"
+, title =   "Edge collapse"
+, publisher =  "{GUDHI Editorial Board}"
+, edition =     "{@GUDHI_VERSION@}"
+, booktitle =   "{GUDHI} User and Reference Manual"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__edge__collapse.html"
 , year =        @GUDHI_VERSION_YEAR@
 }
 
@@ -77,23 +107,23 @@
 , year =        @GUDHI_VERSION_YEAR@
 }
 
-@incollection{gudhi:SubSampling
-, author =  "Cl\'ement Jamin and Siargey Kachanovich"
-, title =   "Subsampling"
+@incollection{gudhi:CoverComplex
+, author =  "Mathieu Carri\`ere"
+, title =   "Cover complex"
 , publisher =  "{GUDHI Editorial Board}"
 , edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__subsampling.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__cover__complex.html"
 , year =        @GUDHI_VERSION_YEAR@
 }
 
-@incollection{gudhi:SpatialSearching
-, author =  "Cl\'ement Jamin"
-, title =   "Spatial searching"
+@incollection{gudhi:CoxeterTriangulation
+, author =  "Siargey Kachanovich"
+, title =   "Coxeter triangulation"
 , publisher =  "{GUDHI Editorial Board}"
 , edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__spatial__searching.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__cover__complex.html"
 , year =        @GUDHI_VERSION_YEAR@
 }
 
@@ -107,13 +137,13 @@
 , year =        @GUDHI_VERSION_YEAR@
 }
 
-@incollection{gudhi:RipsComplex
-, author =  "Cl\'ement Maria and Pawel Dlotko and Vincent Rouvreau and Marc Glisse"
-, title =   "Rips complex"
+@incollection{gudhi:PersistentCohomology
+, author =  "Cl\'ement Maria"
+, title =   "Persistent Cohomology"
 , publisher =  "{GUDHI Editorial Board}"
 , edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__rips__complex.html"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__persistent__cohomology.html"
 , year =        @GUDHI_VERSION_YEAR@
 }
 
@@ -127,42 +157,166 @@
 , year =        @GUDHI_VERSION_YEAR@
 }
 
-@incollection{gudhi:cython
+@incollection{gudhi:PersistenceRepresentations
+, author =  "Pawel Dlotko"
+, title =   "Persistence representations"
+, publisher =  "{GUDHI Editorial Board}"
+, edition =     "{@GUDHI_VERSION@}"
+, booktitle =   "{GUDHI} User and Reference Manual"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group___persistence__representations.html"
+, year =        @GUDHI_VERSION_YEAR@
+}
+
+@incollection{gudhi:SubSampling
+, author =  "Cl\'ement Jamin and Siargey Kachanovich"
+, title =   "Subsampling"
+, publisher =  "{GUDHI Editorial Board}"
+, edition =     "{@GUDHI_VERSION@}"
+, booktitle =   "{GUDHI} User and Reference Manual"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__subsampling.html"
+, year =        @GUDHI_VERSION_YEAR@
+}
+
+@incollection{gudhi:SpatialSearching
+, author =  "Cl\'ement Jamin"
+, title =   "Spatial searching"
+, publisher =  "{GUDHI Editorial Board}"
+, edition =     "{@GUDHI_VERSION@}"
+, booktitle =   "{GUDHI} User and Reference Manual"
+, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__spatial__searching.html"
+, year =        @GUDHI_VERSION_YEAR@
+}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+% Python specific gudhi modules
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+@incollection{gudhi:CubicalPersistenceTensorFlowLayer
+, author =  "Mathieu Carri\`ere"
+, title =   "TensorFlow layer for cubical persistence"
+, publisher =  "{GUDHI Editorial Board}"
+, edition =     "{@GUDHI_VERSION@}"
+, booktitle =   "{GUDHI} User and Reference Manual"
+, url = "https://gudhi.inria.fr/python/@GUDHI_VERSION@/cubical_complex_tflow_itf_ref.html"
+, year =        @GUDHI_VERSION_YEAR@
+}
+
+@incollection{gudhi:CubicalPersistenceScikitlearnInterface
 , author =  "Vincent Rouvreau"
-, title =   "Cython interface"
+, title =   "Cubical complex persistence scikit-learn like interface"
 , publisher =  "{GUDHI Editorial Board}"
 , edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/python/@GUDHI_VERSION@/"
+, url = "https://gudhi.inria.fr/python/@GUDHI_VERSION@/cubical_complex_sklearn_itf_ref.html"
 , year =        @GUDHI_VERSION_YEAR@
 }
 
-@incollection{gudhi:CoverComplex
+@incollection{gudhi:LowerStarPersistenceTensorFlowLayer
 , author =  "Mathieu Carri\`ere"
-, title =   "Cover complex"
+, title =   "TensorFlow layer for lower-star persistence on simplex trees"
 , publisher =  "{GUDHI Editorial Board}"
 , edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__cover__complex.html"
+, url = "https://gudhi.inria.fr/python/@GUDHI_VERSION@/ls_simplex_tree_tflow_itf_ref.html"
 , year =        @GUDHI_VERSION_YEAR@
 }
 
-@incollection{gudhi:PersistenceRepresentations
-, author =  "Pawel Dlotko"
-, title =   "Persistence representations"
+@incollection{gudhi:WeightedRipsComplex
+, author =  "Yuichi Ike"
+, title =   "Weighted Rips Complex"
 , publisher =  "{GUDHI Editorial Board}"
 , edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group___persistence__representations.html"
+, url = "https://gudhi.inria.fr/python/@GUDHI_VERSION@/rips_complex_user.html#weighted-rips-complex"
 , year =        @GUDHI_VERSION_YEAR@
 }
 
-@incollection{gudhi:Collapse
-, author =  "Siddharth Pritam and Marc Glisse"
-, title =   "Edge collapse"
+@incollection{gudhi:DTMRipsComplex
+, author =  "Yuichi Ike"
+, title =   "DTM Rips Complex"
 , publisher =  "{GUDHI Editorial Board}"
 , edition =     "{@GUDHI_VERSION@}"
 , booktitle =   "{GUDHI} User and Reference Manual"
-, url = "https://gudhi.inria.fr/doc/@GUDHI_VERSION@/group__edge__collapse.html"
+, url = "https://gudhi.inria.fr/python/@GUDHI_VERSION@/rips_complex_user.html#dtm-rips-complex"
+, year =        @GUDHI_VERSION_YEAR@
+}
+
+@incollection{gudhi:RipsPersistenceTensorFlowLayer
+, author =  "Mathieu Carri\`ere"
+, title =   "TensorFlow layer for Vietoris-Rips persistence"
+, publisher =  "{GUDHI Editorial Board}"
+, edition =     "{@GUDHI_VERSION@}"
+, booktitle =   "{GUDHI} User and Reference Manual"
+, url = "https://gudhi.inria.fr/python/@GUDHI_VERSION@/rips_complex_tflow_itf_ref.html"
+, year =        @GUDHI_VERSION_YEAR@
+}
+
+@incollection{gudhi:WassersteinDistance
+, author =  "Theo Lacombe, Marc Glisse"
+, title =   "Wasserstein distance"
+, publisher =  "{GUDHI Editorial Board}"
+, edition =     "{@GUDHI_VERSION@}"
+, booktitle =   "{GUDHI} User and Reference Manual"
+, url = "https://gudhi.inria.fr/python/@GUDHI_VERSION@/wasserstein_distance_user.html"
+, year =        @GUDHI_VERSION_YEAR@
+}
+
+@incollection{gudhi:PersistenceRepresentationsScikitlearnInterface
+, author =  "Mathieu Carri\`ere"
+, title =   "Persistence representations scikit-learn like interface"
+, publisher =  "{GUDHI Editorial Board}"
+, edition =     "{@GUDHI_VERSION@}"
+, booktitle =   "{GUDHI} User and Reference Manual"
+, url = "https://gudhi.inria.fr/python/@GUDHI_VERSION@/representations.html"
+, year =        @GUDHI_VERSION_YEAR@
+}
+
+@incollection{gudhi:Atol
+, author =  "Martin Royer"
+, title =   "Measure Vectorization for Automatic Topologically-Oriented Learning"
+, publisher =  "{GUDHI Editorial Board}"
+, edition =     "{@GUDHI_VERSION@}"
+, booktitle =   "{GUDHI} User and Reference Manual"
+, url = "https://gudhi.inria.fr/python/@GUDHI_VERSION@/representations.html#gudhi.representations.vector_methods.Atol"
+, year =        @GUDHI_VERSION_YEAR@
+}
+
+@incollection{gudhi:TimeDelayEmbedding
+, author =  "Yuichi Ike"
+, title =   "Time Delay Embedding"
+, publisher =  "{GUDHI Editorial Board}"
+, edition =     "{@GUDHI_VERSION@}"
+, booktitle =   "{GUDHI} User and Reference Manual"
+, url = "https://gudhi.inria.fr/python/@GUDHI_VERSION@/point_cloud.html#time-delay-embedding"
+, year =        @GUDHI_VERSION_YEAR@
+}
+
+@incollection{gudhi:KNearestNeighbors
+, author =  "Marc Glisse"
+, title =   "K nearest neighbors"
+, publisher =  "{GUDHI Editorial Board}"
+, edition =     "{@GUDHI_VERSION@}"
+, booktitle =   "{GUDHI} User and Reference Manual"
+, url = "https://gudhi.inria.fr/python/@GUDHI_VERSION@/point_cloud.html#module-gudhi.point_cloud.knn"
+, year =        @GUDHI_VERSION_YEAR@
+}
+
+@incollection{gudhi:DistanceToMeasure
+, author =  "Marc Glisse"
+, title =   "Distance to measure"
+, publisher =  "{GUDHI Editorial Board}"
+, edition =     "{@GUDHI_VERSION@}"
+, booktitle =   "{GUDHI} User and Reference Manual"
+, url = "https://gudhi.inria.fr/python/@GUDHI_VERSION@/point_cloud.html#module-gudhi.point_cloud.knn"
+, year =        @GUDHI_VERSION_YEAR@
+}
+
+@incollection{gudhi:PersistenceBasedClustering
+, author =  "Marc Glisse"
+, title =   "persistence-based clustering"
+, publisher =  "{GUDHI Editorial Board}"
+, edition =     "{@GUDHI_VERSION@}"
+, booktitle =   "{GUDHI} User and Reference Manual"
+, url = "https://gudhi.inria.fr/python/@GUDHI_VERSION@/clustering.html"
 , year =        @GUDHI_VERSION_YEAR@
 }