clang-format all files

Add safe version alpha complex 3d persistence utility


git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3907 636b058d-ea47-450e-bf9e-a15bfbe3eedb

Former-commit-id: 54b2d0de9231511864df9fa637b60b7ccf34f50f

1 files changed, 123 insertions, 111 deletions

diff --git a/src/Alpha_complex/test/Alpha_complex_3d_unit_test.cpp b/src/Alpha_complex/test/Alpha_complex_3d_unit_test.cpp
index a32e88a6..9e071195 100644
--- a/src/Alpha_complex/test/Alpha_complex_3d_unit_test.cpp
+++ b/src/Alpha_complex/test/Alpha_complex_3d_unit_test.cpp
@@ -42,21 +42,33 @@
 #include <CGAL/Random.h>
 #include <CGAL/point_generators_3.h>
 
-using Fast_alpha_complex_3d = Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::FAST, false, false>;
-using Safe_alpha_complex_3d = Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::SAFE, false, false>;
-using Exact_alpha_complex_3d = Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::EXACT, false, false>;
-
-using Fast_weighted_alpha_complex_3d = Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::FAST, true, false>;
-using Safe_weighted_alpha_complex_3d = Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::SAFE, true, false>;
-using Exact_weighted_alpha_complex_3d = Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::EXACT, true, false>;
-
-using Fast_periodic_alpha_complex_3d = Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::FAST, false, true>;
-using Safe_periodic_alpha_complex_3d = Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::SAFE, false, true>;
-using Exact_periodic_alpha_complex_3d = Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::EXACT, false, true>;
-
-using Fast_weighted_periodic_alpha_complex_3d = Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::FAST, true, true>;
-using Safe_weighted_periodic_alpha_complex_3d = Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::SAFE, true, true>;
-using Exact_weighted_periodic_alpha_complex_3d = Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::EXACT, true, true>;
+using Fast_alpha_complex_3d =
+    Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::FAST, false, false>;
+using Safe_alpha_complex_3d =
+    Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::SAFE, false, false>;
+using Exact_alpha_complex_3d =
+    Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::EXACT, false, false>;
+
+using Fast_weighted_alpha_complex_3d =
+    Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::FAST, true, false>;
+using Safe_weighted_alpha_complex_3d =
+    Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::SAFE, true, false>;
+using Exact_weighted_alpha_complex_3d =
+    Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::EXACT, true, false>;
+
+using Fast_periodic_alpha_complex_3d =
+    Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::FAST, false, true>;
+using Safe_periodic_alpha_complex_3d =
+    Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::SAFE, false, true>;
+using Exact_periodic_alpha_complex_3d =
+    Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::EXACT, false, true>;
+
+using Fast_weighted_periodic_alpha_complex_3d =
+    Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::FAST, true, true>;
+using Safe_weighted_periodic_alpha_complex_3d =
+    Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::SAFE, true, true>;
+using Exact_weighted_periodic_alpha_complex_3d =
+    Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::EXACT, true, true>;
 
 BOOST_AUTO_TEST_CASE(Alpha_complex_3d_from_points) {
   // -----------------
@@ -89,18 +101,18 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_3d_from_points) {
   // ---------------------
   // Compare both versions
   // ---------------------
-  std::cout << "Exact Alpha complex 3d is of dimension " << exact_stree.dimension()
-            << " - Non exact is " << stree.dimension() << std::endl;
+  std::cout << "Exact Alpha complex 3d is of dimension " << exact_stree.dimension() << " - Non exact is "
+            << stree.dimension() << std::endl;
   BOOST_CHECK(exact_stree.dimension() == stree.dimension());
-  std::cout << "Exact Alpha complex 3d num_simplices " << exact_stree.num_simplices()
-            << " - Non exact is " << stree.num_simplices() << std::endl;
+  std::cout << "Exact Alpha complex 3d num_simplices " << exact_stree.num_simplices() << " - Non exact is "
+            << stree.num_simplices() << std::endl;
   BOOST_CHECK(exact_stree.num_simplices() == stree.num_simplices());
-  std::cout << "Exact Alpha complex 3d num_vertices " << exact_stree.num_vertices()
-            << " - Non exact is " << stree.num_vertices() << std::endl;
+  std::cout << "Exact Alpha complex 3d num_vertices " << exact_stree.num_vertices() << " - Non exact is "
+            << stree.num_vertices() << std::endl;
   BOOST_CHECK(exact_stree.num_vertices() == stree.num_vertices());
 
   auto sh = stree.filtration_simplex_range().begin();
-  while(sh != stree.filtration_simplex_range().end()) {
+  while (sh != stree.filtration_simplex_range().end()) {
     std::vector<int> simplex;
     std::vector<int> exact_simplex;
     std::cout << "Non-exact ( ";
@@ -108,7 +120,8 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_3d_from_points) {
       simplex.push_back(vertex);
       std::cout << vertex << " ";
     }
-    std::cout << ") -> " << "[" << stree.filtration(*sh) << "] ";
+    std::cout << ") -> "
+              << "[" << stree.filtration(*sh) << "] ";
     std::cout << std::endl;
 
     // Find it in the exact structure
@@ -133,18 +146,18 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_3d_from_points) {
   // ---------------------
   // Compare both versions
   // ---------------------
-  std::cout << "Exact Alpha complex 3d is of dimension " << safe_stree.dimension()
-            << " - Non exact is " << stree.dimension() << std::endl;
+  std::cout << "Exact Alpha complex 3d is of dimension " << safe_stree.dimension() << " - Non exact is "
+            << stree.dimension() << std::endl;
   BOOST_CHECK(safe_stree.dimension() == stree.dimension());
-  std::cout << "Exact Alpha complex 3d num_simplices " << safe_stree.num_simplices()
-            << " - Non exact is " << stree.num_simplices() << std::endl;
+  std::cout << "Exact Alpha complex 3d num_simplices " << safe_stree.num_simplices() << " - Non exact is "
+            << stree.num_simplices() << std::endl;
   BOOST_CHECK(safe_stree.num_simplices() == stree.num_simplices());
-  std::cout << "Exact Alpha complex 3d num_vertices " << safe_stree.num_vertices()
-            << " - Non exact is " << stree.num_vertices() << std::endl;
+  std::cout << "Exact Alpha complex 3d num_vertices " << safe_stree.num_vertices() << " - Non exact is "
+            << stree.num_vertices() << std::endl;
   BOOST_CHECK(safe_stree.num_vertices() == stree.num_vertices());
 
   auto safe_sh = stree.filtration_simplex_range().begin();
-  while(safe_sh != stree.filtration_simplex_range().end()) {
+  while (safe_sh != stree.filtration_simplex_range().end()) {
     std::vector<int> simplex;
     std::vector<int> exact_simplex;
 #ifdef DEBUG_TRACES
@@ -157,7 +170,8 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_3d_from_points) {
 #endif
     }
 #ifdef DEBUG_TRACES
-    std::cout << ") -> " << "[" << stree.filtration(*safe_sh) << "] ";
+    std::cout << ") -> "
+              << "[" << stree.filtration(*safe_sh) << "] ";
     std::cout << std::endl;
 #endif
 
@@ -172,9 +186,9 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_3d_from_points) {
   }
 }
 
-typedef boost::mpl::list<Fast_weighted_alpha_complex_3d,
-                         Safe_weighted_alpha_complex_3d,
-                         Exact_weighted_alpha_complex_3d> weighted_variants_type_list;
+typedef boost::mpl::list<Fast_weighted_alpha_complex_3d, Safe_weighted_alpha_complex_3d,
+                         Exact_weighted_alpha_complex_3d>
+    weighted_variants_type_list;
 
 #ifdef GUDHI_DEBUG
 BOOST_AUTO_TEST_CASE_TEMPLATE(Alpha_complex_weighted_throw, Weighted_alpha_complex_3d, weighted_variants_type_list) {
@@ -191,7 +205,7 @@ BOOST_AUTO_TEST_CASE_TEMPLATE(Alpha_complex_weighted_throw, Weighted_alpha_compl
   std::vector<double> weights = {0.01, 0.005, 0.006, 0.01, 0.009, 0.001};
 
   std::cout << "Check exception throw in debug mode" << std::endl;
-  BOOST_CHECK_THROW (Weighted_alpha_complex_3d wac(w_points, weights), std::invalid_argument);
+  BOOST_CHECK_THROW(Weighted_alpha_complex_3d wac(w_points, weights), std::invalid_argument);
 }
 #endif
 
@@ -218,7 +232,7 @@ BOOST_AUTO_TEST_CASE_TEMPLATE(Alpha_complex_weighted, Weighted_alpha_complex_3d,
 
   std::vector<Weighted_point_3> weighted_points;
 
-  for (std::size_t i=0; i < w_points.size(); i++) {
+  for (std::size_t i = 0; i < w_points.size(); i++) {
     weighted_points.push_back(Weighted_point_3(w_points[i], weights[i]));
   }
   Weighted_alpha_complex_3d alpha_complex_w_p(weighted_points);
@@ -229,18 +243,18 @@ BOOST_AUTO_TEST_CASE_TEMPLATE(Alpha_complex_weighted, Weighted_alpha_complex_3d,
   // ---------------------
   // Compare both versions
   // ---------------------
-  std::cout << "Weighted alpha complex 3d is of dimension " << stree_bis.dimension()
-            << " - versus " << stree.dimension() << std::endl;
+  std::cout << "Weighted alpha complex 3d is of dimension " << stree_bis.dimension() << " - versus "
+            << stree.dimension() << std::endl;
   BOOST_CHECK(stree_bis.dimension() == stree.dimension());
-  std::cout << "Weighted alpha complex 3d num_simplices " << stree_bis.num_simplices()
-            << " - versus " << stree.num_simplices() << std::endl;
+  std::cout << "Weighted alpha complex 3d num_simplices " << stree_bis.num_simplices() << " - versus "
+            << stree.num_simplices() << std::endl;
   BOOST_CHECK(stree_bis.num_simplices() == stree.num_simplices());
-  std::cout << "Weighted alpha complex 3d num_vertices " << stree_bis.num_vertices()
-            << " - versus " << stree.num_vertices() << std::endl;
+  std::cout << "Weighted alpha complex 3d num_vertices " << stree_bis.num_vertices() << " - versus "
+            << stree.num_vertices() << std::endl;
   BOOST_CHECK(stree_bis.num_vertices() == stree.num_vertices());
 
   auto sh = stree.filtration_simplex_range().begin();
-  while(sh != stree.filtration_simplex_range().end()) {
+  while (sh != stree.filtration_simplex_range().end()) {
     std::vector<int> simplex;
     std::vector<int> exact_simplex;
 #ifdef DEBUG_TRACES
@@ -253,7 +267,8 @@ BOOST_AUTO_TEST_CASE_TEMPLATE(Alpha_complex_weighted, Weighted_alpha_complex_3d,
 #endif
     }
 #ifdef DEBUG_TRACES
-    std::cout << ") -> " << "[" << stree.filtration(*sh) << "] ";
+    std::cout << ") -> "
+              << "[" << stree.filtration(*sh) << "] ";
     std::cout << std::endl;
 #endif
 
@@ -266,13 +281,12 @@ BOOST_AUTO_TEST_CASE_TEMPLATE(Alpha_complex_weighted, Weighted_alpha_complex_3d,
 
     ++sh;
   }
-
 }
 
 #ifdef GUDHI_DEBUG
-typedef boost::mpl::list<Fast_periodic_alpha_complex_3d,
-                         Safe_periodic_alpha_complex_3d,
-                         Exact_periodic_alpha_complex_3d> periodic_variants_type_list;
+typedef boost::mpl::list<Fast_periodic_alpha_complex_3d, Safe_periodic_alpha_complex_3d,
+                         Exact_periodic_alpha_complex_3d>
+    periodic_variants_type_list;
 
 BOOST_AUTO_TEST_CASE_TEMPLATE(Alpha_complex_periodic_throw, Periodic_alpha_complex_3d, periodic_variants_type_list) {
   std::cout << "Periodic alpha complex 3d exception throw" << std::endl;
@@ -284,18 +298,18 @@ BOOST_AUTO_TEST_CASE_TEMPLATE(Alpha_complex_periodic_throw, Periodic_alpha_compl
 
   std::cout << "Check exception throw in debug mode" << std::endl;
   // Check it throws an exception when the cuboid is not iso
-  BOOST_CHECK_THROW (Periodic_alpha_complex_3d periodic_alpha_complex(p_points, 0., 0., 0., 0.9, 1., 1.),
-                     std::invalid_argument);
-  BOOST_CHECK_THROW (Periodic_alpha_complex_3d periodic_alpha_complex(p_points, 0., 0., 0., 1., 0.9, 1.),
-                     std::invalid_argument);
-  BOOST_CHECK_THROW (Periodic_alpha_complex_3d periodic_alpha_complex(p_points, 0., 0., 0., 1., 1., 0.9),
-                     std::invalid_argument);
-  BOOST_CHECK_THROW (Periodic_alpha_complex_3d periodic_alpha_complex(p_points, 0., 0., 0., 1.1, 1., 1.),
-                     std::invalid_argument);
-  BOOST_CHECK_THROW (Periodic_alpha_complex_3d periodic_alpha_complex(p_points, 0., 0., 0., 1., 1.1, 1.),
-                     std::invalid_argument);
-  BOOST_CHECK_THROW (Periodic_alpha_complex_3d periodic_alpha_complex(p_points, 0., 0., 0., 1., 1., 1.1),
-                     std::invalid_argument);
+  BOOST_CHECK_THROW(Periodic_alpha_complex_3d periodic_alpha_complex(p_points, 0., 0., 0., 0.9, 1., 1.),
+                    std::invalid_argument);
+  BOOST_CHECK_THROW(Periodic_alpha_complex_3d periodic_alpha_complex(p_points, 0., 0., 0., 1., 0.9, 1.),
+                    std::invalid_argument);
+  BOOST_CHECK_THROW(Periodic_alpha_complex_3d periodic_alpha_complex(p_points, 0., 0., 0., 1., 1., 0.9),
+                    std::invalid_argument);
+  BOOST_CHECK_THROW(Periodic_alpha_complex_3d periodic_alpha_complex(p_points, 0., 0., 0., 1.1, 1., 1.),
+                    std::invalid_argument);
+  BOOST_CHECK_THROW(Periodic_alpha_complex_3d periodic_alpha_complex(p_points, 0., 0., 0., 1., 1.1, 1.),
+                    std::invalid_argument);
+  BOOST_CHECK_THROW(Periodic_alpha_complex_3d periodic_alpha_complex(p_points, 0., 0., 0., 1., 1., 1.1),
+                    std::invalid_argument);
 }
 #endif
 
@@ -310,7 +324,7 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_periodic) {
   CGAL::Random_points_in_cube_3<Fast_periodic_alpha_complex_3d::Point_3, Creator> in_cube(1, random);
   std::vector<Fast_periodic_alpha_complex_3d::Point_3> p_points;
 
-  for (int i=0 ; i < 50 ; i++) {
+  for (int i = 0; i < 50; i++) {
     Fast_periodic_alpha_complex_3d::Point_3 p = *in_cube++;
     p_points.push_back(p);
   }
@@ -327,7 +341,7 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_periodic) {
 
   std::vector<Exact_periodic_alpha_complex_3d::Point_3> e_p_points;
 
-  for (auto p: p_points) {
+  for (auto p : p_points) {
     e_p_points.push_back(Exact_periodic_alpha_complex_3d::Point_3(p[0], p[1], p[2]));
   }
 
@@ -339,27 +353,25 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_periodic) {
   // ---------------------
   // Compare both versions
   // ---------------------
-  std::cout << "Exact periodic alpha complex 3d is of dimension " << exact_stree.dimension()
-            << " - Non exact is " << stree.dimension() << std::endl;
+  std::cout << "Exact periodic alpha complex 3d is of dimension " << exact_stree.dimension() << " - Non exact is "
+            << stree.dimension() << std::endl;
   BOOST_CHECK(exact_stree.dimension() == stree.dimension());
-  std::cout << "Exact periodic alpha complex 3d num_simplices " << exact_stree.num_simplices()
-            << " - Non exact is " << stree.num_simplices() << std::endl;
+  std::cout << "Exact periodic alpha complex 3d num_simplices " << exact_stree.num_simplices() << " - Non exact is "
+            << stree.num_simplices() << std::endl;
   BOOST_CHECK(exact_stree.num_simplices() == stree.num_simplices());
-  std::cout << "Exact periodic alpha complex 3d num_vertices " << exact_stree.num_vertices()
-            << " - Non exact is " << stree.num_vertices() << std::endl;
+  std::cout << "Exact periodic alpha complex 3d num_vertices " << exact_stree.num_vertices() << " - Non exact is "
+            << stree.num_vertices() << std::endl;
   BOOST_CHECK(exact_stree.num_vertices() == stree.num_vertices());
 
-
   // We cannot compare as objects from dispatcher on the alpha shape is not deterministic.
   // cf. https://github.com/CGAL/cgal/issues/3346
   auto sh = stree.filtration_simplex_range().begin();
   auto sh_exact = exact_stree.filtration_simplex_range().begin();
 
-  while(sh != stree.filtration_simplex_range().end() || sh_exact != exact_stree.filtration_simplex_range().end()) {
+  while (sh != stree.filtration_simplex_range().end() || sh_exact != exact_stree.filtration_simplex_range().end()) {
     GUDHI_TEST_FLOAT_EQUALITY_CHECK(stree.filtration(*sh), exact_stree.filtration(*sh_exact), 1e-14);
 
-    std::vector<int> vh(stree.simplex_vertex_range(*sh).begin(),
-                        stree.simplex_vertex_range(*sh).end());
+    std::vector<int> vh(stree.simplex_vertex_range(*sh).begin(), stree.simplex_vertex_range(*sh).end());
     std::vector<int> exact_vh(exact_stree.simplex_vertex_range(*sh_exact).begin(),
                               exact_stree.simplex_vertex_range(*sh_exact).end());
 
@@ -371,7 +383,6 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_periodic) {
   BOOST_CHECK(sh == stree.filtration_simplex_range().end());
   BOOST_CHECK(sh_exact == exact_stree.filtration_simplex_range().end());
 
-
   // ----------------------
   // Safe periodic version
   // ----------------------
@@ -379,7 +390,7 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_periodic) {
 
   std::vector<Safe_periodic_alpha_complex_3d::Point_3> s_p_points;
 
-  for (auto p: p_points) {
+  for (auto p : p_points) {
     s_p_points.push_back(Safe_periodic_alpha_complex_3d::Point_3(p[0], p[1], p[2]));
   }
 
@@ -396,11 +407,10 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_periodic) {
   sh = stree.filtration_simplex_range().begin();
   auto sh_safe = safe_stree.filtration_simplex_range().begin();
 
-  while(sh != stree.filtration_simplex_range().end() || sh_safe != safe_stree.filtration_simplex_range().end()) {
+  while (sh != stree.filtration_simplex_range().end() || sh_safe != safe_stree.filtration_simplex_range().end()) {
     GUDHI_TEST_FLOAT_EQUALITY_CHECK(stree.filtration(*sh), safe_stree.filtration(*sh_safe), 1e-14);
 
-    std::vector<int> vh(stree.simplex_vertex_range(*sh).begin(),
-                        stree.simplex_vertex_range(*sh).end());
+    std::vector<int> vh(stree.simplex_vertex_range(*sh).begin(), stree.simplex_vertex_range(*sh).end());
     std::vector<int> safe_vh(safe_stree.simplex_vertex_range(*sh_safe).begin(),
                              safe_stree.simplex_vertex_range(*sh_safe).end());
 
@@ -411,11 +421,11 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_periodic) {
 
   BOOST_CHECK(sh == stree.filtration_simplex_range().end());
   BOOST_CHECK(sh_safe == safe_stree.filtration_simplex_range().end());
-
 }
 
 typedef boost::mpl::list<Fast_weighted_periodic_alpha_complex_3d, Exact_weighted_periodic_alpha_complex_3d,
-    Safe_weighted_periodic_alpha_complex_3d> wp_variants_type_list;
+                         Safe_weighted_periodic_alpha_complex_3d>
+    wp_variants_type_list;
 
 #ifdef GUDHI_DEBUG
 BOOST_AUTO_TEST_CASE_TEMPLATE(Alpha_complex_weighted_periodic_throw, Weighted_periodic_alpha_complex_3d,
@@ -427,7 +437,7 @@ BOOST_AUTO_TEST_CASE_TEMPLATE(Alpha_complex_weighted_periodic_throw, Weighted_pe
   CGAL::Random_points_in_cube_3<Weighted_periodic_alpha_complex_3d::Point_3, Creator> in_cube(1, random);
   std::vector<Weighted_periodic_alpha_complex_3d::Point_3> wp_points;
 
-  for (int i=0 ; i < 50 ; i++) {
+  for (int i = 0; i < 50; i++) {
     Weighted_periodic_alpha_complex_3d::Point_3 p = *in_cube++;
     wp_points.push_back(p);
   }
@@ -439,44 +449,50 @@ BOOST_AUTO_TEST_CASE_TEMPLATE(Alpha_complex_weighted_periodic_throw, Weighted_pe
 
   std::cout << "Cuboid is not iso exception" << std::endl;
   // Check it throws an exception when the cuboid is not iso
-  BOOST_CHECK_THROW (Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, -1., -1., -1., 0.9, 1., 1.),
-                     std::invalid_argument);
-  BOOST_CHECK_THROW (Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, -1., -1., -1., 1., 0.9, 1.),
-                     std::invalid_argument);
-  BOOST_CHECK_THROW (Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, -1., -1., -1., 1., 1., 0.9),
-                     std::invalid_argument);
-  BOOST_CHECK_THROW (Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, -1., -1., -1., 1.1, 1., 1.),
-                     std::invalid_argument);
-  BOOST_CHECK_THROW (Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, -1., -1., -1., 1., 1.1, 1.),
-                     std::invalid_argument);
-  BOOST_CHECK_THROW (Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, -1., -1., -1., 1., 1., 1.1),
-                     std::invalid_argument);
+  BOOST_CHECK_THROW(
+      Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, -1., -1., -1., 0.9, 1., 1.),
+      std::invalid_argument);
+  BOOST_CHECK_THROW(
+      Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, -1., -1., -1., 1., 0.9, 1.),
+      std::invalid_argument);
+  BOOST_CHECK_THROW(
+      Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, -1., -1., -1., 1., 1., 0.9),
+      std::invalid_argument);
+  BOOST_CHECK_THROW(
+      Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, -1., -1., -1., 1.1, 1., 1.),
+      std::invalid_argument);
+  BOOST_CHECK_THROW(
+      Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, -1., -1., -1., 1., 1.1, 1.),
+      std::invalid_argument);
+  BOOST_CHECK_THROW(
+      Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, -1., -1., -1., 1., 1., 1.1),
+      std::invalid_argument);
 
   std::cout << "0 <= point.weight() < 1/64 * domain_size * domain_size exception" << std::endl;
   // Weights must be in range ]0, 1/64 = 0.015625[
   double temp = p_weights[25];
   p_weights[25] = 1.0;
-  BOOST_CHECK_THROW (Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, 0., 0., 0., 1., 1., 1.),
-                     std::invalid_argument);
+  BOOST_CHECK_THROW(Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, 0., 0., 0., 1., 1., 1.),
+                    std::invalid_argument);
   // Weights must be in range ]0, 1/64 = 0.015625[
   p_weights[25] = temp;
   temp = p_weights[14];
   p_weights[14] = -1e-10;
-  BOOST_CHECK_THROW (Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, 0., 0., 0., 1., 1., 1.),
-                     std::invalid_argument);
+  BOOST_CHECK_THROW(Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, 0., 0., 0., 1., 1., 1.),
+                    std::invalid_argument);
   p_weights[14] = temp;
 
   std::cout << "wp_points and p_weights size exception" << std::endl;
   // Weights and points must have the same size
   // + 1
   p_weights.push_back(1e-10);
-  BOOST_CHECK_THROW (Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, 0., 0., 0., 1., 1., 1.),
-                     std::invalid_argument);
+  BOOST_CHECK_THROW(Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, 0., 0., 0., 1., 1., 1.),
+                    std::invalid_argument);
   // - 1
   p_weights.pop_back();
   p_weights.pop_back();
-  BOOST_CHECK_THROW (Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, 0., 0., 0., 1., 1., 1.),
-                     std::invalid_argument);
+  BOOST_CHECK_THROW(Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, 0., 0., 0., 1., 1., 1.),
+                    std::invalid_argument);
 }
 #endif
 
@@ -491,7 +507,7 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_weighted_periodic) {
   CGAL::Random_points_in_cube_3<Fast_weighted_periodic_alpha_complex_3d::Point_3, Creator> in_cube(1, random);
   std::vector<Fast_weighted_periodic_alpha_complex_3d::Point_3> p_points;
 
-  for (int i=0 ; i < 50 ; i++) {
+  for (int i = 0; i < 50; i++) {
     Fast_weighted_periodic_alpha_complex_3d::Point_3 p = *in_cube++;
     p_points.push_back(p);
   }
@@ -513,7 +529,7 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_weighted_periodic) {
 
   std::vector<Exact_weighted_periodic_alpha_complex_3d::Point_3> e_p_points;
 
-  for (auto p: p_points) {
+  for (auto p : p_points) {
     e_p_points.push_back(Exact_weighted_periodic_alpha_complex_3d::Point_3(p[0], p[1], p[2]));
   }
 
@@ -535,17 +551,15 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_weighted_periodic) {
             << " - Non exact is " << stree.num_vertices() << std::endl;
   BOOST_CHECK(exact_stree.num_vertices() == stree.num_vertices());
 
-
   // We cannot compare as objects from dispatcher on the alpha shape is not deterministic.
   // cf. https://github.com/CGAL/cgal/issues/3346
   auto sh = stree.filtration_simplex_range().begin();
   auto sh_exact = exact_stree.filtration_simplex_range().begin();
 
-  while(sh != stree.filtration_simplex_range().end() || sh_exact != exact_stree.filtration_simplex_range().end()) {
+  while (sh != stree.filtration_simplex_range().end() || sh_exact != exact_stree.filtration_simplex_range().end()) {
     GUDHI_TEST_FLOAT_EQUALITY_CHECK(stree.filtration(*sh), exact_stree.filtration(*sh_exact), 1e-14);
 
-    std::vector<int> vh(stree.simplex_vertex_range(*sh).begin(),
-                        stree.simplex_vertex_range(*sh).end());
+    std::vector<int> vh(stree.simplex_vertex_range(*sh).begin(), stree.simplex_vertex_range(*sh).end());
     std::vector<int> exact_vh(exact_stree.simplex_vertex_range(*sh_exact).begin(),
                               exact_stree.simplex_vertex_range(*sh_exact).end());
 
@@ -557,7 +571,6 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_weighted_periodic) {
   BOOST_CHECK(sh == stree.filtration_simplex_range().end());
   BOOST_CHECK(sh_exact == exact_stree.filtration_simplex_range().end());
 
-
   // ----------------------
   // Safe weighted periodic version
   // ----------------------
@@ -565,7 +578,7 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_weighted_periodic) {
 
   std::vector<Safe_weighted_periodic_alpha_complex_3d::Point_3> s_p_points;
 
-  for (auto p: p_points) {
+  for (auto p : p_points) {
     s_p_points.push_back(Safe_weighted_periodic_alpha_complex_3d::Point_3(p[0], p[1], p[2]));
   }
 
@@ -582,11 +595,10 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_weighted_periodic) {
   sh = stree.filtration_simplex_range().begin();
   auto sh_safe = safe_stree.filtration_simplex_range().begin();
 
-  while(sh != stree.filtration_simplex_range().end() || sh_safe != safe_stree.filtration_simplex_range().end()) {
+  while (sh != stree.filtration_simplex_range().end() || sh_safe != safe_stree.filtration_simplex_range().end()) {
     GUDHI_TEST_FLOAT_EQUALITY_CHECK(stree.filtration(*sh), safe_stree.filtration(*sh_safe), 1e-14);
 
-    std::vector<int> vh(stree.simplex_vertex_range(*sh).begin(),
-                        stree.simplex_vertex_range(*sh).end());
+    std::vector<int> vh(stree.simplex_vertex_range(*sh).begin(), stree.simplex_vertex_range(*sh).end());
     std::vector<int> safe_vh(safe_stree.simplex_vertex_range(*sh_safe).begin(),
                              safe_stree.simplex_vertex_range(*sh_safe).end());