Fix spell checker errors

git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2475 636b058d-ea47-450e-bf9e-a15bfbe3eedb

Former-commit-id: 94422e6f356532b2db4dc5a55cbb851210b3c36d

16 files changed, 20 insertions, 34 deletions

diff --git a/src/Persistence_representations/utilities/persistence_heat_maps/compute_distance_of_persistence_heat_maps.cpp b/src/Persistence_representations/utilities/persistence_heat_maps/compute_distance_of_persistence_heat_maps.cpp
index d3e6f322..27a7836f 100644
--- a/src/Persistence_representations/utilities/persistence_heat_maps/compute_distance_of_persistence_heat_maps.cpp
+++ b/src/Persistence_representations/utilities/persistence_heat_maps/compute_distance_of_persistence_heat_maps.cpp
@@ -34,8 +34,8 @@ using namespace Gudhi::Persistence_representations;
 
 int main( int argc , char** argv )
 {
-	std::cout << "This program compute dsitance of persistence heat maps stored in a file (the file needs to be created beforehand). \n";	
-	std::cout << "The first parameter of a program is an interger p. The program compute L^p distance of the two heat maps. For L^infty distance choose p = -1. \n";
+	std::cout << "This program compute distance of persistence heat maps stored in a file (the file needs to be created beforehand). \n";	
+	std::cout << "The first parameter of a program is an integer p. The program compute L^p distance of the two heat maps. For L^infty distance choose p = -1. \n";
 	std::cout << "The remaining parameters of this programs are names of files with persistence heat maps.\n";
 	
 	if ( argc < 3 )
@@ -76,7 +76,7 @@ int main( int argc , char** argv )
 		distance[i] = v;
 	}
 	
-	//and now we can compute the distnaces:
+	//and now we can compute the distances:
 	for ( size_t i = 0 ; i != filenames.size() ; ++i )
 	{
 		for ( size_t j = i ; j != filenames.size() ; ++j )
@@ -106,6 +106,3 @@ int main( int argc , char** argv )
 
 
 
-
-
-	
diff --git a/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_arctan_of_their_persistence.cpp b/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_arctan_of_their_persistence.cpp
index aa887c9c..f755e9a6 100644
--- a/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_arctan_of_their_persistence.cpp
+++ b/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_arctan_of_their_persistence.cpp
@@ -36,10 +36,10 @@ using namespace Gudhi::Persistence_representations;
 
 int main( int argc , char** argv )
 {
-	std::cout << "This program creates persistence heat map of diagrams provided as an input. The Gaussian kernels are weighted by the arcus tangens of their persistence.\n";
+	std::cout << "This program creates persistence heat map of diagrams provided as an input. The Gaussian kernels are weighted by the arc tangential of their persistence.\n";
 	std::cout << "The first parameter of a program is an integer, a size of a grid.\n";
 	std::cout << "The second and third parameters are min and max of the grid. If you want those numbers to be computed based on the data, set them both to -1 \n";
-	std::cerr << "The fourth parameter is an integer, the standard deviation of a gaussian kernel expressed in a number of pixels \n";
+	std::cerr << "The fourth parameter is an integer, the standard deviation of a Gaussian kernel expressed in a number of pixels \n";
 	std::cout << "The fifth parameter of this program is a dimension of persistence that will be used in creation of the persistence heat maps.";
 	std::cout << "If our input files contain persistence pairs of various dimension, as a fifth parameter of the procedure please provide the dimension of persistence you want to use.";
 	std::cout << "If in your file there are only birth-death pairs of the same dimension, set the first parameter to -1." << std::endl;		
diff --git a/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_distance_from_diagonal.cpp b/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_distance_from_diagonal.cpp
index aa13d786..732b3768 100644
--- a/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_distance_from_diagonal.cpp
+++ b/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_distance_from_diagonal.cpp
@@ -38,7 +38,7 @@ int main( int argc , char** argv )
 	std::cout << "This program creates persistence heat map of diagrams provided as an input. The Gaussian kernels are weighted by the distance of a center from the diagonal.\n";
 	std::cout << "The first parameter of a program is an integer, a size of a grid.\n";
 	std::cout << "The second and third parameters are min and max of the grid. If you want those numbers to be computed based on the data, set them both to -1 \n";
-	std::cerr << "The fourth parameter is an integer, the standard deviation of a gaussian kernel expressed in a number of pixels \n";
+	std::cerr << "The fourth parameter is an integer, the standard deviation of a Gaussian kernel expressed in a number of pixels \n";
 	std::cout << "The fifth parameter of this program is a dimension of persistence that will be used in creation of the persistence heat maps.";
 	std::cout << "If our input files contain persistence pairs of various dimension, as a fifth parameter of the procedure please provide the dimension of persistence you want to use.";
 	std::cout << "If in your file there are only birth-death pairs of the same dimension, set the first parameter to -1." << std::endl;			
@@ -62,8 +62,6 @@ int main( int argc , char** argv )
 		dimension = (unsigned)dim;
 	}
 	
-	//std::cout << "Parameters of the program : size_of_grid : " << size_of_grid << ", min_ : " << min_ << ", max_ : " << max_ << ", stdiv: " << stdiv << ", dim : " << dim << std::endl;
-	
 	std::vector< const char* > filenames;
 	for ( int i = 6 ; i != argc ; ++i )
 	{
diff --git a/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_squared_diag_distance.cpp b/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_squared_diag_distance.cpp
index 46258329..58406d08 100644
--- a/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_squared_diag_distance.cpp
+++ b/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_squared_diag_distance.cpp
@@ -38,7 +38,7 @@ int main( int argc , char** argv )
 	std::cout << "This program creates persistence heat map of diagrams provided as an input. The Gaussian kernels are weighted by the square of distance of a center from the diagonal.\n";
 	std::cout << "The first parameter of a program is an integer, a size of a grid.\n";
 	std::cout << "The second and third parameters are min and max of the grid. If you want those numbers to be computed based on the data, set them both to -1 \n";
-	std::cerr << "The fourth parameter is an integer, the standard deviation of a gaussian kernel expressed in a number of pixels \n";
+	std::cerr << "The fourth parameter is an integer, the standard deviation of a Gaussian kernel expressed in a number of pixels \n";
 	std::cout << "The fifth parameter of this program is a dimension of persistence that will be used in creation of the persistence heat maps.";
 	std::cout << "If our input files contain persistence pairs of various dimension, as a fifth parameter of the procedure please provide the dimension of persistence you want to use.";
 	std::cout << "If in your file there are only birth-death pairs of the same dimension, set the first parameter to -1." << std::endl;				
diff --git a/src/Persistence_representations/utilities/persistence_heat_maps/create_persistence_heat_maps.cpp b/src/Persistence_representations/utilities/persistence_heat_maps/create_persistence_heat_maps.cpp
index cac81495..90b50b0b 100644
--- a/src/Persistence_representations/utilities/persistence_heat_maps/create_persistence_heat_maps.cpp
+++ b/src/Persistence_representations/utilities/persistence_heat_maps/create_persistence_heat_maps.cpp
@@ -39,7 +39,7 @@ int main( int argc , char** argv )
 	std::cout << "This program creates persistence heat map of diagrams provided as an input.\n";
 	std::cout << "The first parameter of a program is an integer, a size of a grid.\n";
 	std::cout << "The second and third parameters are min and max of the grid. If you want those numbers to be computed based on the data, set them both to -1 \n";
-	std::cerr << "The fourth parameter is an integer, the standard deviation of a gaussian kernel expressed in a number of pixels \n";
+	std::cerr << "The fourth parameter is an integer, the standard deviation of a Gaussian kernel expressed in a number of pixels \n";
 	
 	std::cout << "The fifth parameter of this program is a dimension of persistence that will be used in creation of the persistence heat maps.";
 	std::cout << "If our input files contain persistence pairs of various dimension, as a fifth parameter of the procedure please provide the dimension of persistence you want to use.";
diff --git a/src/Persistence_representations/utilities/persistence_heat_maps/create_pssk.cpp b/src/Persistence_representations/utilities/persistence_heat_maps/create_pssk.cpp
index 6aab42f7..6a07bf19 100644
--- a/src/Persistence_representations/utilities/persistence_heat_maps/create_pssk.cpp
+++ b/src/Persistence_representations/utilities/persistence_heat_maps/create_pssk.cpp
@@ -37,7 +37,7 @@ int main( int argc , char** argv )
 	std::cout << "This program creates PSSK of diagrams provided as an input.\n";
 	std::cout << "The first parameter of a program is an integer, a size of a grid.\n";
 	std::cout << "The second and third parameters are min and max of the grid. If you want those numbers to be computed based on the data, set them both to -1 \n";
-	std::cerr << "The fourth parameter is an integer, the standard deviation of a gaussian kernel expressed in a number of pixels \n";
+	std::cerr << "The fourth parameter is an integer, the standard deviation of a Gaussian kernel expressed in a number of pixels \n";
 	std::cout << "The fifth parameter of this program is a dimension of persistence that will be used in creation of the persistence heat maps.";
 	std::cout << "If our input files contain persistence pairs of various dimension, as a fifth parameter of the procedure please provide the dimension of persistence you want to use.";
 	std::cout << "If in your file there are only birth-death pairs of the same dimension, set the first parameter to -1." << std::endl;					
diff --git a/src/Persistence_representations/utilities/persistence_heat_maps/plot_persistence_heat_map.cpp b/src/Persistence_representations/utilities/persistence_heat_maps/plot_persistence_heat_map.cpp
index 5a4776ff..7aedfbb1 100644
--- a/src/Persistence_representations/utilities/persistence_heat_maps/plot_persistence_heat_map.cpp
+++ b/src/Persistence_representations/utilities/persistence_heat_maps/plot_persistence_heat_map.cpp
@@ -34,7 +34,7 @@ using namespace Gudhi::Persistence_representations;
 
 int main( int argc , char** argv )
 {
-	std::cout << "This program plot persistence landscape stored in a file (the file needs to be created beforehand). Please call the code with the name of a landsape file \n";	
+	std::cout << "This program plot persistence landscape stored in a file (the file needs to be created beforehand). Please call the code with the name of a landscape file \n";	
 	Persistence_heat_maps<constant_scaling_function> l;
 	l.load_from_file( argv[1] );		
 	l.plot( argv[1] );	
diff --git a/src/Persistence_representations/utilities/persistence_intervals/compute_bottleneck_distance.cpp b/src/Persistence_representations/utilities/persistence_intervals/compute_bottleneck_distance.cpp
index 19e49bbb..fe4e709f 100644
--- a/src/Persistence_representations/utilities/persistence_intervals/compute_bottleneck_distance.cpp
+++ b/src/Persistence_representations/utilities/persistence_intervals/compute_bottleneck_distance.cpp
@@ -34,7 +34,7 @@ using namespace Gudhi::Persistence_representations;
 
 int main( int argc , char** argv )
 {
-	std::cout << "This program compute the bottleneck distance of persistence diarams stored in a files. \n";
+	std::cout << "This program compute the bottleneck distance of persistence diagrams stored in a files. \n";
 	std::cout << "The first parameter of the program is the dimension of persistence to be used to construct persistence landscapes. If your file contains ";
 	std::cout << "the information about dimension of persistence pairs, please provide here the dimension of persistence pairs you want to use. If your input files consist only ";
 	std::cout << "of birth-death pairs, please set this first parameter to -1 \n";	
diff --git a/src/Persistence_representations/utilities/persistence_intervals/plot_histogram_of_intervals_lengths.cpp b/src/Persistence_representations/utilities/persistence_intervals/plot_histogram_of_intervals_lengths.cpp
index b2cbac70..6e2598fa 100644
--- a/src/Persistence_representations/utilities/persistence_intervals/plot_histogram_of_intervals_lengths.cpp
+++ b/src/Persistence_representations/utilities/persistence_intervals/plot_histogram_of_intervals_lengths.cpp
@@ -71,7 +71,7 @@ int main( int argc , char** argv )
 		out << histogram[i]  << std::endl;
 	}		
 	out << std::endl;
-	std::cout << "To vizualize, open gnuplot and type: load \'" << gnuplot_script.str().c_str() << "\'" <<  std::endl;	
+	std::cout << "To visualize, open gnuplot and type: load \'" << gnuplot_script.str().c_str() << "\'" <<  std::endl;	
 	out.close();	
 	return 0;
 }
diff --git a/src/Persistence_representations/utilities/persistence_intervals/plot_persistence_Betti_numbers.cpp b/src/Persistence_representations/utilities/persistence_intervals/plot_persistence_Betti_numbers.cpp
index e20f85c0..5b36e0ce 100644
--- a/src/Persistence_representations/utilities/persistence_intervals/plot_persistence_Betti_numbers.cpp
+++ b/src/Persistence_representations/utilities/persistence_intervals/plot_persistence_Betti_numbers.cpp
@@ -89,12 +89,7 @@ int main( int argc , char** argv )
 	out << std::endl;
 	out.close();
 	
-	//for ( size_t i = 0 ; i != pbns.size() ; ++i )
-	//{
-	//	std::cout << pbns[i].first << " " << pbns[i].second << std::endl;
-	//}	
-	
-	std::cout << "To vizualize, open gnuplot and type: load \'" << gnuplot_script.str().c_str() << "\'" << std::endl;
+	std::cout << "To visualize, open gnuplot and type: load \'" << gnuplot_script.str().c_str() << "\'" << std::endl;
 			
 	return 0;
 }
diff --git a/src/Persistence_representations/utilities/persistence_landscapes/compute_distance_of_landscapes.cpp b/src/Persistence_representations/utilities/persistence_landscapes/compute_distance_of_landscapes.cpp
index 85954cb2..ef969ed0 100644
--- a/src/Persistence_representations/utilities/persistence_landscapes/compute_distance_of_landscapes.cpp
+++ b/src/Persistence_representations/utilities/persistence_landscapes/compute_distance_of_landscapes.cpp
@@ -34,7 +34,7 @@ using namespace Gudhi::Persistence_representations;
 int main( int argc , char** argv )
 {
 	std::cout << "This program compute distance of persistence landscapes stored in a file (the file needs to be created beforehand). \n";	
-	std::cout << "The first parameter of a program is an interger p. The program compute L^p distance of the given landscapes. For L^infty distance choose p = -1. \n";
+	std::cout << "The first parameter of a program is an integer p. The program compute L^p distance of the given landscapes. For L^infty distance choose p = -1. \n";
 	std::cout << "The remaining parameters of this programs are names of files with persistence landscapes.";
 	
 	if ( argc < 3 )
diff --git a/src/Persistence_representations/utilities/persistence_landscapes/plot_landscapes.cpp b/src/Persistence_representations/utilities/persistence_landscapes/plot_landscapes.cpp
index b79a689d..670f0364 100644
--- a/src/Persistence_representations/utilities/persistence_landscapes/plot_landscapes.cpp
+++ b/src/Persistence_representations/utilities/persistence_landscapes/plot_landscapes.cpp
@@ -33,7 +33,7 @@ using namespace Gudhi::Persistence_representations;
 
 int main( int argc , char** argv )
 {
-	std::cout << "This program plot persistence landscape stored in a file (the file needs to be created beforehand). Please call the code with the name of a landsape file \n";	
+	std::cout << "This program plot persistence landscape stored in a file (the file needs to be created beforehand). Please call the code with the name of a landscape file \n";	
 	Persistence_landscape l;
 	l.load_landscape_from_file( argv[1] );
 	
diff --git a/src/Persistence_representations/utilities/persistence_landscapes_on_grid/compute_distance_of_landscapes_on_grid.cpp b/src/Persistence_representations/utilities/persistence_landscapes_on_grid/compute_distance_of_landscapes_on_grid.cpp
index 4ecbd548..3065b52c 100644
--- a/src/Persistence_representations/utilities/persistence_landscapes_on_grid/compute_distance_of_landscapes_on_grid.cpp
+++ b/src/Persistence_representations/utilities/persistence_landscapes_on_grid/compute_distance_of_landscapes_on_grid.cpp
@@ -33,8 +33,8 @@ using namespace Gudhi::Persistence_representations;
 
 int main( int argc , char** argv )
 {
-	std::cout << "This program compute dsitance of persistence landscapes on grid stored in a file (the file needs to be created beforehand). \n";	
-	std::cout << "The first parameter of a program is an interger p. The program compute L^p distance of the the landscapes on grid. For L^infty distance choose p = -1. \n";
+	std::cout << "This program compute distance of persistence landscapes on grid stored in a file (the file needs to be created beforehand). \n";	
+	std::cout << "The first parameter of a program is an integer p. The program compute L^p distance of the landscapes on grid. For L^infty distance choose p = -1. \n";
 	std::cout << "The remaining parameters of this programs are names of files with persistence landscapes on grid.\n";
 	
 	if ( argc < 3 )
@@ -106,5 +106,3 @@ int main( int argc , char** argv )
 
 
 
-
-	
diff --git a/src/Persistence_representations/utilities/persistence_landscapes_on_grid/plot_landscapes_on_grid.cpp b/src/Persistence_representations/utilities/persistence_landscapes_on_grid/plot_landscapes_on_grid.cpp
index 700b2f1f..b4fa3046 100644
--- a/src/Persistence_representations/utilities/persistence_landscapes_on_grid/plot_landscapes_on_grid.cpp
+++ b/src/Persistence_representations/utilities/persistence_landscapes_on_grid/plot_landscapes_on_grid.cpp
@@ -33,7 +33,7 @@ using namespace Gudhi::Persistence_representations;
 
 int main( int argc , char** argv )
 {
-	std::cout << "This program plot persistence landscape on grid stored in a file (the file needs to be created beforehand). Please call the code with the name of a landsape on grid file \n";	
+	std::cout << "This program plot persistence landscape on grid stored in a file (the file needs to be created beforehand). Please call the code with the name of a landscape on grid file \n";	
 	if ( argc == 1 )
 	{
 		std::cout << "Wrong parameters of a program call, the program will now terminate \n";
diff --git a/src/Persistence_representations/utilities/persistence_vectors/compute_distance_of_persistence_vectors.cpp b/src/Persistence_representations/utilities/persistence_vectors/compute_distance_of_persistence_vectors.cpp
index 39e24cd7..5c0d3328 100644
--- a/src/Persistence_representations/utilities/persistence_vectors/compute_distance_of_persistence_vectors.cpp
+++ b/src/Persistence_representations/utilities/persistence_vectors/compute_distance_of_persistence_vectors.cpp
@@ -34,7 +34,7 @@ using namespace Gudhi::Persistence_representations;
 int main( int argc , char** argv )
 {
 	std::cout << "This program compute distance of persistence vectors stored in a file (the file needs to be created beforehand). \n";	
-	std::cout << "The first parameter of a program is an interger p. The program compute l^p distance of the vectors. For l^infty distance choose p = -1. \n";
+	std::cout << "The first parameter of a program is an integer p. The program compute l^p distance of the vectors. For l^infty distance choose p = -1. \n";
 	std::cout << "The remaining parameters of this programs are names of files with persistence vectors.\n";
 	
 	if ( argc < 3 )
@@ -60,7 +60,6 @@ int main( int argc , char** argv )
 	vectors.reserve( filenames.size() );
 	for ( size_t file_no = 0 ; file_no != filenames.size() ; ++file_no )
 	{
-		//cerr << filenames[file_no] << endl;
 		Vector_distances_in_diagram< Euclidean_distance > l;
 		l.load_from_file( filenames[file_no] );
 		vectors.push_back( l );
diff --git a/src/Persistence_representations/utilities/persistence_vectors/create_persistence_vectors.cpp b/src/Persistence_representations/utilities/persistence_vectors/create_persistence_vectors.cpp
index 634bcb13..d7a22e58 100644
--- a/src/Persistence_representations/utilities/persistence_vectors/create_persistence_vectors.cpp
+++ b/src/Persistence_representations/utilities/persistence_vectors/create_persistence_vectors.cpp
@@ -52,8 +52,7 @@ int main( int argc , char** argv )
 	
 	for ( size_t i = 0 ; i != filenames.size() ; ++i )
 	{
-		std::cerr << "Creatign persistence vectors based on a file : " << filenames[i] << std::endl;
-		//std::vector< std::pair< double , double > > persistence_pairs = read_gudhi_persistence_file_in_one_dimension( filenames[i] , size_t dimension = 0 )
+		std::cerr << "Creating persistence vectors based on a file : " << filenames[i] << std::endl;
 		Vector_distances_in_diagram< Euclidean_distance > l( filenames[i] , dimension );				
 		std::stringstream ss;
 		ss << filenames[i] << ".vect";