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authorMathieuCarriere <mathieu.carriere3@gmail.com>2020-03-17 12:17:43 -0400
committerMathieuCarriere <mathieu.carriere3@gmail.com>2020-03-17 12:17:43 -0400
commit50427c9fe5c63f3bfe27270db0ea26480e73cb1a (patch)
treed4f867c6076ad4ae425a77c4346b370921e6251f /src/Simplex_tree/include/gudhi/Simplex_tree.h
parent58d923b13afb9b18a2d5b028c6575baee691d182 (diff)
parent5fdbad3fdd350edc3a5340110f4c5332c73517b3 (diff)
fix conflict
Diffstat (limited to 'src/Simplex_tree/include/gudhi/Simplex_tree.h')
-rw-r--r--src/Simplex_tree/include/gudhi/Simplex_tree.h75
1 files changed, 72 insertions, 3 deletions
diff --git a/src/Simplex_tree/include/gudhi/Simplex_tree.h b/src/Simplex_tree/include/gudhi/Simplex_tree.h
index f661f687..1c06e7cb 100644
--- a/src/Simplex_tree/include/gudhi/Simplex_tree.h
+++ b/src/Simplex_tree/include/gudhi/Simplex_tree.h
@@ -24,6 +24,7 @@
#include <boost/iterator/transform_iterator.hpp>
#include <boost/graph/adjacency_list.hpp>
#include <boost/range/adaptor/reversed.hpp>
+#include <boost/container/static_vector.hpp>
#ifdef GUDHI_USE_TBB
#include <tbb/parallel_sort.h>
@@ -248,8 +249,8 @@ class Simplex_tree {
* which is consequenlty
* equal to \f$(-1)^{\text{dim} \sigma}\f$ the canonical orientation on the simplex.
*/
- Simplex_vertex_range simplex_vertex_range(Simplex_handle sh) {
- assert(sh != null_simplex()); // Empty simplex
+ Simplex_vertex_range simplex_vertex_range(Simplex_handle sh) const {
+ GUDHI_CHECK(sh != null_simplex(), "empty simplex");
return Simplex_vertex_range(Simplex_vertex_iterator(this, sh),
Simplex_vertex_iterator(this));
}
@@ -452,6 +453,15 @@ class Simplex_tree {
return true;
}
+ /** \brief Returns the filtration value of a simplex.
+ *
+ * Same as `filtration()`, but does not handle `null_simplex()`.
+ */
+ static Filtration_value filtration_(Simplex_handle sh) {
+ GUDHI_CHECK (sh != null_simplex(), "null simplex");
+ return sh->second.filtration();
+ }
+
public:
/** \brief Returns the key associated to a simplex.
*
@@ -829,7 +839,7 @@ class Simplex_tree {
/** Returns the Siblings containing a simplex.*/
template<class SimplexHandle>
- Siblings* self_siblings(SimplexHandle sh) {
+ static Siblings* self_siblings(SimplexHandle sh) {
if (sh->second.children()->parent() == sh->first)
return sh->second.children()->oncles();
else
@@ -1589,6 +1599,65 @@ class Simplex_tree {
this->make_filtration_non_decreasing();
}
+ /** \brief Returns a vertex of `sh` that has the same filtration value as `sh` if it exists, and `null_vertex()` otherwise.
+ *
+ * For a lower-star filtration built with `make_filtration_non_decreasing()`, this is a way to invert the process and find out which vertex had its filtration value propagated to `sh`.
+ * If several vertices have the same filtration value, the one it returns is arbitrary. */
+ Vertex_handle vertex_with_same_filtration(Simplex_handle sh) {
+ auto filt = filtration_(sh);
+ for(auto v : simplex_vertex_range(sh))
+ if(filtration_(find_vertex(v)) == filt)
+ return v;
+ return null_vertex();
+ }
+
+ /** \brief Returns an edge of `sh` that has the same filtration value as `sh` if it exists, and `null_simplex()` otherwise.
+ *
+ * For a flag-complex built with `expansion()`, this is a way to invert the process and find out which edge had its filtration value propagated to `sh`.
+ * If several edges have the same filtration value, the one it returns is arbitrary.
+ *
+ * \pre `sh` must have dimension at least 1. */
+ Simplex_handle edge_with_same_filtration(Simplex_handle sh) {
+ // See issue #251 for potential speed improvements.
+ auto&& vertices = simplex_vertex_range(sh); // vertices in decreasing order
+ auto end = std::end(vertices);
+ auto vi = std::begin(vertices);
+ GUDHI_CHECK(vi != end, "empty simplex");
+ auto v0 = *vi;
+ ++vi;
+ GUDHI_CHECK(vi != end, "simplex of dimension 0");
+ if(std::next(vi) == end) return sh; // shortcut for dimension 1
+ boost::container::static_vector<Vertex_handle, 40> suffix;
+ suffix.push_back(v0);
+ auto filt = filtration_(sh);
+ do
+ {
+ Vertex_handle v = *vi;
+ auto&& children1 = find_vertex(v)->second.children()->members_;
+ for(auto w : suffix){
+ // Can we take advantage of the fact that suffix is ordered?
+ Simplex_handle s = children1.find(w);
+ if(filtration_(s) == filt)
+ return s;
+ }
+ suffix.push_back(v);
+ }
+ while(++vi != end);
+ return null_simplex();
+ }
+
+ /** \brief Returns a minimal face of `sh` that has the same filtration value as `sh`.
+ *
+ * For a filtration built with `make_filtration_non_decreasing()`, this is a way to invert the process and find out which simplex had its filtration value propagated to `sh`.
+ * If several minimal (for inclusion) simplices have the same filtration value, the one it returns is arbitrary, and it is not guaranteed to be the one with smallest dimension. */
+ Simplex_handle minimal_simplex_with_same_filtration(Simplex_handle sh) {
+ auto filt = filtration_(sh);
+ // Naive implementation, it can be sped up.
+ for(auto b : boundary_simplex_range(sh))
+ if(filtration_(b) == filt)
+ return minimal_simplex_with_same_filtration(b);
+ return sh; // None of its faces has the same filtration.
+ }
private:
Vertex_handle null_vertex_;