Added an example with a distance matrix for the farthest point algorithm

git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1874 636b058d-ea47-450e-bf9e-a15bfbe3eedb

Former-commit-id: 340e465189dc7ec8f8706e60e2d8097b53bfd5a0

1 files changed, 69 insertions, 0 deletions

diff --git a/src/Subsampling/example/example_custom_kernel.cpp b/src/Subsampling/example/example_custom_kernel.cpp
new file mode 100644
index 00000000..05797ebe
--- /dev/null
+++ b/src/Subsampling/example/example_custom_kernel.cpp
@@ -0,0 +1,69 @@
+#include <gudhi/choose_n_farthest_points.h>
+
+#include <CGAL/Epick_d.h>
+#include <CGAL/Random.h>
+
+#include <vector>
+#include <iterator>
+
+
+/* The class Kernel contains a distance function defined on the set of points {0,1,2,3}
+ * and computes a distance according to the matrix:
+ * 0 1 2 4
+ * 1 0 4 2
+ * 2 4 0 1
+ * 4 2 1 0
+ */
+class Kernel {
+public:
+  typedef double FT;
+  typedef unsigned Point_d;
+
+  // Class Squared_distance_d
+  class Squared_distance_d {
+  private:
+    std::vector<std::vector<FT>> matrix_;
+    
+  public:
+
+  Squared_distance_d()
+  {
+    matrix_.push_back(std::vector<FT>({0,1,2,4}));
+    matrix_.push_back(std::vector<FT>({1,0,4,2}));
+    matrix_.push_back(std::vector<FT>({2,4,0,1}));
+    matrix_.push_back(std::vector<FT>({4,2,1,0}));
+  }
+  
+    FT operator()(Point_d p1, Point_d p2)
+    {
+      return matrix_[p1][p2];
+    }
+  };
+
+  // Constructor
+  Kernel()
+  {}
+
+  // Object of type Squared_distance_d
+  Squared_distance_d squared_distance_d_object() const
+  {
+    return Squared_distance_d();
+  }
+  
+};
+
+int main(void) {
+  typedef Kernel K;
+  typedef typename K::Point_d Point_d;
+
+  K k;
+  std::vector<Point_d> points = {0,1,2,3};
+  std::vector<Point_d> results;
+  
+  Gudhi::subsampling::choose_n_farthest_points(k, points, 2, std::back_inserter(results));
+  std::cout << "Before sparsification: " << points.size() << " points.\n";
+  std::cout << "After  sparsification: " << results.size() << " points.\n";
+  std::cout << "Result table: {" << results[0] << "," << results[1] << "}\n";
+
+  return 0;
+}