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| author | ROUVREAU Vincent <vincent.rouvreau@inria.fr> | 2019-11-20 14:12:01 +0100 |
|---|---|---|
| committer | ROUVREAU Vincent <vincent.rouvreau@inria.fr> | 2019-11-20 14:12:01 +0100 |
| commit | 6bc1f27bbab03139718db674f98d748a7aeaced3 (patch) | |
| tree | 5a4eaed1b8a1dd8cac6e0601fcb0cbf703555146 /src/python/doc/persistence_graphical_tools_user.rst | |
| parent | 57c1f0f4b36b934c8fc54c8691f77b9b6d0eff9d (diff) | |
Use matplotlib axes to be able to subplot persistence graphical tools
Diffstat (limited to 'src/python/doc/persistence_graphical_tools_user.rst')
| -rw-r--r-- | src/python/doc/persistence_graphical_tools_user.rst | 13 |
1 files changed, 8 insertions, 5 deletions
diff --git a/src/python/doc/persistence_graphical_tools_user.rst b/src/python/doc/persistence_graphical_tools_user.rst index b2124fdd..2de99252 100644 --- a/src/python/doc/persistence_graphical_tools_user.rst +++ b/src/python/doc/persistence_graphical_tools_user.rst @@ -20,6 +20,7 @@ This function can display the persistence result as a barcode: .. plot:: :include-source: + import matplotlib.pyplot as plot import gudhi off_file = gudhi.__root_source_dir__ + '/data/points/tore3D_300.off' @@ -29,7 +30,7 @@ This function can display the persistence result as a barcode: simplex_tree = rips_complex.create_simplex_tree(max_dimension=3) diag = simplex_tree.persistence(min_persistence=0.4) - plot = gudhi.plot_persistence_barcode(diag) + gudhi.plot_persistence_barcode(diag) plot.show() Show persistence as a diagram @@ -43,14 +44,15 @@ This function can display the persistence result as a diagram: .. plot:: :include-source: + import matplotlib.pyplot as plot import gudhi # rips_on_tore3D_1307.pers obtained from write_persistence_diagram method persistence_file=gudhi.__root_source_dir__ + \ '/data/persistence_diagram/rips_on_tore3D_1307.pers' - plt = gudhi.plot_persistence_diagram(persistence_file=persistence_file, + gudhi.plot_persistence_diagram(persistence_file=persistence_file, legend=True) - plt.show() + plot.show() Persistence density ------------------- @@ -63,11 +65,12 @@ If you want more information on a specific dimension, for instance: .. plot:: :include-source: + import matplotlib.pyplot as plot import gudhi # rips_on_tore3D_1307.pers obtained from write_persistence_diagram method persistence_file=gudhi.__root_source_dir__ + \ '/data/persistence_diagram/rips_on_tore3D_1307.pers' - plt = gudhi.plot_persistence_density(persistence_file=persistence_file, + gudhi.plot_persistence_density(persistence_file=persistence_file, max_intervals=0, dimension=1, legend=True) - plt.show() + plot.show() |