Rebuild example page and link to example. Add also a link to the publication. Doc review: document edge collapse ignores simplices of higher dimension.

1 files changed, 18 insertions, 15 deletions

diff --git a/src/python/doc/examples.rst b/src/python/doc/examples.rst
index a42227e3..76e5d4c7 100644
--- a/src/python/doc/examples.rst
+++ b/src/python/doc/examples.rst
@@ -7,27 +7,30 @@ Examples
 
 .. only:: builder_html
 
-    * :download:`rips_complex_from_points_example.py <../example/rips_complex_from_points_example.py>`
+    * :download:`alpha_complex_diagram_persistence_from_off_file_example.py <../example/alpha_complex_diagram_persistence_from_off_file_example.py>`
     * :download:`alpha_complex_from_points_example.py <../example/alpha_complex_from_points_example.py>`
-    * :download:`simplex_tree_example.py <../example/simplex_tree_example.py>`
     * :download:`alpha_rips_persistence_bottleneck_distance.py <../example/alpha_rips_persistence_bottleneck_distance.py>`
-    * :download:`tangential_complex_plain_homology_from_off_file_example.py <../example/tangential_complex_plain_homology_from_off_file_example.py>`
-    * :download:`alpha_complex_diagram_persistence_from_off_file_example.py <../example/alpha_complex_diagram_persistence_from_off_file_example.py>`
-    * :download:`periodic_cubical_complex_barcode_persistence_from_perseus_file_example.py <../example/periodic_cubical_complex_barcode_persistence_from_perseus_file_example.py>`
     * :download:`bottleneck_basic_example.py <../example/bottleneck_basic_example.py>`
-    * :download:`gudhi_graphical_tools_example.py <../example/gudhi_graphical_tools_example.py>`
-    * :download:`plot_simplex_tree_dim012.py <../example/plot_simplex_tree_dim012.py>`
-    * :download:`plot_rips_complex.py <../example/plot_rips_complex.py>`
-    * :download:`plot_alpha_complex.py <../example/plot_alpha_complex.py>`
-    * :download:`witness_complex_from_nearest_landmark_table.py <../example/witness_complex_from_nearest_landmark_table.py>`
+    * :download:`coordinate_graph_induced_complex.py <../example/coordinate_graph_induced_complex.py>`
+    * :download:`diagram_vectorizations_distances_kernels.py <../example/diagram_vectorizations_distances_kernels.py>`
     * :download:`euclidean_strong_witness_complex_diagram_persistence_from_off_file_example.py <../example/euclidean_strong_witness_complex_diagram_persistence_from_off_file_example.py>`
     * :download:`euclidean_witness_complex_diagram_persistence_from_off_file_example.py <../example/euclidean_witness_complex_diagram_persistence_from_off_file_example.py>`
-    * :download:`rips_complex_diagram_persistence_from_off_file_example.py <../example/rips_complex_diagram_persistence_from_off_file_example.py>`
+    * :download:`functional_graph_induced_complex.py <../example/functional_graph_induced_complex.py>`
+    * :download:`gudhi_graphical_tools_example.py <../example/gudhi_graphical_tools_example.py>`
+    * :download:`nerve_of_a_covering.py <../example/nerve_of_a_covering.py>`
+    * :download:`periodic_cubical_complex_barcode_persistence_from_perseus_file_example.py <../example/periodic_cubical_complex_barcode_persistence_from_perseus_file_example.py>`
+    * :download:`plot_alpha_complex.py <../example/plot_alpha_complex.py>`
+    * :download:`plot_rips_complex.py <../example/plot_rips_complex.py>`
+    * :download:`plot_simplex_tree_dim012.py <../example/plot_simplex_tree_dim012.py>`
+    * :download:`random_cubical_complex_persistence_example.py <../example/random_cubical_complex_persistence_example.py>`
+    * :download:`rips_complex_diagram_persistence_from_correlation_matrix_file_example.py <../example/rips_complex_diagram_persistence_from_correlation_matrix_file_example.py>`
     * :download:`rips_complex_diagram_persistence_from_distance_matrix_file_example.py <../example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py>`
+    * :download:`rips_complex_diagram_persistence_from_off_file_example.py <../example/rips_complex_diagram_persistence_from_off_file_example.py>`
+    * :download:`rips_complex_edge_collapse_example.py <../example/rips_complex_edge_collapse_example.py>`
+    * :download:`rips_complex_from_points_example.py <../example/rips_complex_from_points_example.py>`
     * :download:`rips_persistence_diagram.py <../example/rips_persistence_diagram.py>`
+    * :download:`simplex_tree_example.py <../example/simplex_tree_example.py>`
     * :download:`sparse_rips_persistence_diagram.py <../example/sparse_rips_persistence_diagram.py>`
-    * :download:`random_cubical_complex_persistence_example.py <../example/random_cubical_complex_persistence_example.py>`
-    * :download:`coordinate_graph_induced_complex.py <../example/coordinate_graph_induced_complex.py>`
-    * :download:`functional_graph_induced_complex.py <../example/functional_graph_induced_complex.py>`
+    * :download:`tangential_complex_plain_homology_from_off_file_example.py <../example/tangential_complex_plain_homology_from_off_file_example.py>`
     * :download:`voronoi_graph_induced_complex.py <../example/voronoi_graph_induced_complex.py>`
-    * :download:`nerve_of_a_covering.py <../example/nerve_of_a_covering.py>`
+    * :download:`witness_complex_from_nearest_landmark_table.py <../example/witness_complex_from_nearest_landmark_table.py>`