diff options
author | Marc Glisse <marc.glisse@inria.fr> | 2022-03-30 22:11:00 +0200 |
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committer | Marc Glisse <marc.glisse@inria.fr> | 2022-03-30 22:11:00 +0200 |
commit | 90a3a5067eb250e61105c1660ffe0c004d44fd39 (patch) | |
tree | a641d7fac1c275af52b2eb3c889d68ddac89eb15 /src/python/include/Simplex_tree_interface.h | |
parent | 2830010c74cc74d29691faeeb7bb3a31cc53d87d (diff) | |
parent | bbff86f1218fc7bc9976353901aa94cfa54792f6 (diff) |
Merge remote-tracking branch 'origin/master' into insert
Diffstat (limited to 'src/python/include/Simplex_tree_interface.h')
-rw-r--r-- | src/python/include/Simplex_tree_interface.h | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/src/python/include/Simplex_tree_interface.h b/src/python/include/Simplex_tree_interface.h index 3061884f..95c0c037 100644 --- a/src/python/include/Simplex_tree_interface.h +++ b/src/python/include/Simplex_tree_interface.h @@ -15,10 +15,15 @@ #include <gudhi/distance_functions.h> #include <gudhi/Simplex_tree.h> #include <gudhi/Points_off_io.h> +#ifdef GUDHI_USE_EIGEN3 +#include <gudhi/Flag_complex_edge_collapser.h> +#endif #include <iostream> #include <vector> #include <utility> // std::pair +#include <tuple> +#include <iterator> // for std::distance namespace Gudhi { @@ -36,6 +41,7 @@ class Simplex_tree_interface : public Simplex_tree<SimplexTreeOptions> { using Skeleton_simplex_iterator = typename Base::Skeleton_simplex_iterator; using Complex_simplex_iterator = typename Base::Complex_simplex_iterator; using Extended_filtration_data = typename Base::Extended_filtration_data; + using Boundary_simplex_iterator = typename Base::Boundary_simplex_iterator; using Siblings = typename Base::Siblings; using Node = typename Base::Node; @@ -183,6 +189,38 @@ class Simplex_tree_interface : public Simplex_tree<SimplexTreeOptions> { return new_dgm; } + Simplex_tree_interface* collapse_edges(int nb_collapse_iteration) { +#ifdef GUDHI_USE_EIGEN3 + using Filtered_edge = std::tuple<Vertex_handle, Vertex_handle, Filtration_value>; + std::vector<Filtered_edge> edges; + for (Simplex_handle sh : Base::skeleton_simplex_range(1)) { + if (Base::dimension(sh) == 1) { + typename Base::Simplex_vertex_range rg = Base::simplex_vertex_range(sh); + auto vit = rg.begin(); + Vertex_handle v = *vit; + Vertex_handle w = *++vit; + edges.emplace_back(v, w, Base::filtration(sh)); + } + } + + for (int iteration = 0; iteration < nb_collapse_iteration; iteration++) { + edges = Gudhi::collapse::flag_complex_collapse_edges(edges); + } + Simplex_tree_interface* collapsed_stree_ptr = new Simplex_tree_interface(); + // Copy the original 0-skeleton + for (Simplex_handle sh : Base::skeleton_simplex_range(0)) { + collapsed_stree_ptr->insert({*(Base::simplex_vertex_range(sh).begin())}, Base::filtration(sh)); + } + // Insert remaining edges + for (auto remaining_edge : edges) { + collapsed_stree_ptr->insert({std::get<0>(remaining_edge), std::get<1>(remaining_edge)}, std::get<2>(remaining_edge)); + } + return collapsed_stree_ptr; +#else + throw std::runtime_error("Unable to collapse edges as it requires Eigen3 >= 3.1.0."); +#endif + } + // Iterator over the simplex tree Complex_simplex_iterator get_simplices_iterator_begin() { // this specific case works because the range is just a pair of iterators - won't work if range was a vector @@ -214,6 +252,15 @@ class Simplex_tree_interface : public Simplex_tree<SimplexTreeOptions> { // this specific case works because the range is just a pair of iterators - won't work if range was a vector return Base::skeleton_simplex_range(dimension).end(); } + + std::pair<Boundary_simplex_iterator, Boundary_simplex_iterator> get_boundary_iterators(const Simplex& simplex) { + auto bd_sh = Base::find(simplex); + if (bd_sh == Base::null_simplex()) + throw std::runtime_error("simplex not found - cannot find boundaries"); + // this specific case works because the range is just a pair of iterators - won't work if range was a vector + auto boundary_srange = Base::boundary_simplex_range(bd_sh); + return std::make_pair(boundary_srange.begin(), boundary_srange.end()); + } }; } // namespace Gudhi |