Rollback of class #include<gudhi/XXX.h>. Done from Doxyfile with STRIP_FROM_INC_PATH.

Modified Gudhi banner to fix "Geometric Uderstanding" into "Geometry Uderstanding"


git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1090 636b058d-ea47-450e-bf9e-a15bfbe3eedb

Former-commit-id: c5830fb6f583118a5078254fde5d4a97210c10b7

11 files changed, 7 insertions, 20 deletions

diff --git a/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex.h b/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex.h
index c1a3af5c..56fa297c 100644
--- a/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex.h
+++ b/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex.h
@@ -46,7 +46,6 @@ const bool globalDbg = false;
 template <typename T> class is_before_in_filtration;
 
 /**
- * @class Bitmap_cubical_complex Bitmap_cubical_complex.h gudhi/Bitmap_cubical_complex.h
  * @brief Cubical complex represented as a bitmap.
  * @ingroup cubical_complex
  * @details This is a Bitmap_cubical_complex class. It joints a functionalities of Bitmap_cubical_complex_base and
@@ -318,7 +317,6 @@ class Bitmap_cubical_complex : public T {
   };
 
   /**
-   * @class Filtration_simplex_range Bitmap_cubical_complex.h gudhi/Bitmap_cubical_complex.h
    * @brief Filtration_simplex_range provides the ranges for Filtration_simplex_iterator.
    **/
   class Filtration_simplex_range {
@@ -490,7 +488,6 @@ class Bitmap_cubical_complex : public T {
   };
 
   /**
-   * @class Skeleton_simplex_range Bitmap_cubical_complex.h gudhi/Bitmap_cubical_complex.h
    * @brief Class needed for compatibility with Gudhi. Not useful for other purposes.
    **/
   class Skeleton_simplex_range {
diff --git a/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex/counter.h b/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex/counter.h
index bee19344..3a8c3988 100644
--- a/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex/counter.h
+++ b/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex/counter.h
@@ -31,9 +31,8 @@ namespace Gudhi {
 namespace Cubical_complex {
 
 /**
- * @class counter counter.h gudhi/Bitmap_cubical_complex/counter.h
- * This is an implementation of a counter being a vector of integers. 
- * The constructor of the class takes as an input two vectors W and V. 
+ * @brief This is an implementation of a counter being a vector of integers. 
+ * @details The constructor of the class takes as an input two vectors W and V. 
  * It assumes that W < V coordinatewise.
  * If the initial counter W is not specified, it is assumed to be vector of zeros. 
  * The class allows to iterate between W and V by using increment() function.
diff --git a/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_base.h b/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_base.h
index 7904eb5b..2f74ba9e 100644
--- a/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_base.h
+++ b/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_base.h
@@ -39,7 +39,6 @@ namespace Gudhi {
 namespace Cubical_complex {
 
 /**
- * @class Bitmap_cubical_complex_base Bitmap_cubical_complex_base.h gudhi/Bitmap_cubical_complex_base.h
  * @brief Cubical complex represented as a bitmap, class with basic implementation.
  * @ingroup cubical_complex
  * @details This is a class implementing a basic bitmap data structure to store cubical complexes.
@@ -190,7 +189,6 @@ class Bitmap_cubical_complex_base {
   // ITERATORS
 
   /**
-   * @class All_cells_iterator Bitmap_cubical_complex_base.h gudhi/Bitmap_cubical_complex_base.h
    * @brief Iterator through all cells in the complex (in order they appear in the structure -- i.e.
    * in lexicographical order).
    **/
@@ -259,7 +257,6 @@ class Bitmap_cubical_complex_base {
   }
 
   /**
-   * @class All_cells_range Bitmap_cubical_complex_base.h gudhi/Bitmap_cubical_complex_base.h
    * @brief All_cells_range class provides ranges for All_cells_iterator
    **/
   class All_cells_range {
@@ -311,7 +308,6 @@ class Bitmap_cubical_complex_base {
   }
 
   /**
-   * @class Top_dimensional_cells_iterator Bitmap_cubical_complex_base.h gudhi/Bitmap_cubical_complex_base.h
    * @brief Iterator through top dimensional cells of the complex. The cells appear in order they are stored
    * in the structure (i.e. in lexicographical order)
    **/
@@ -414,7 +410,6 @@ class Bitmap_cubical_complex_base {
   }
 
   /**
-   * @class Top_dimensional_cells_range Bitmap_cubical_complex_base.h gudhi/Bitmap_cubical_complex_base.h
    * @brief Top_dimensional_cells_iterator_range class provides ranges for Top_dimensional_cells_iterator_range
    **/
   class Top_dimensional_cells_range {
diff --git a/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h b/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h
index 5b7e4115..0d0f2f84 100644
--- a/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h
+++ b/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h
@@ -39,7 +39,6 @@ namespace Cubical_complex {
 // the cells on the right / top are not in the Bitmap_cubical_complex_periodic_boundary_conditions_base
 
 /**
- * @class Bitmap_cubical_complex_periodic_boundary_conditions_base Bitmap_cubical_complex_periodic_boundary_conditions_base.h gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h
  * @brief Cubical complex with periodic boundary conditions represented as a bitmap.
  * @ingroup cubical_complex
  * @details This is a class implementing a bitmap data structure with periodic boundary conditions. Most of the functions are
diff --git a/src/Doxyfile b/src/Doxyfile
index 63e7145c..abafdf16 100644
--- a/src/Doxyfile
+++ b/src/Doxyfile
@@ -153,7 +153,7 @@ STRIP_FROM_PATH        =
 # specify the list of include paths that are normally passed to the compiler
 # using the -I flag.
 
-STRIP_FROM_INC_PATH    =
+STRIP_FROM_INC_PATH    = include concept
 
 # If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter (but
 # less readable) file names. This can be useful is your file systems doesn't
diff --git a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h
index d77b993e..1b86f1f9 100644
--- a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h
+++ b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h
@@ -174,8 +174,7 @@ different representations.
  @{  
  */
 
-/** \class Persistent_cohomology Persistent_cohomology.h gudhi/Persistent_cohomology.h
- * \brief Computes the persistent cohomology of a filtered complex.
+/** \brief Computes the persistent cohomology of a filtered complex.
  *
  * The computation is implemented with a Compressed Annotation Matrix
  * (CAM)\cite DBLP:conf/esa/BoissonnatDM13,
diff --git a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Field_Zp.h b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Field_Zp.h
index 458dff98..6db16e69 100644
--- a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Field_Zp.h
+++ b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Field_Zp.h
@@ -30,8 +30,7 @@ namespace Gudhi {
 
 namespace persistent_cohomology {
 
-/** \class Field_Zp Field_Zp.h gudhi/Persistent_cohomology/Field_Zp.h
- * \brief Structure representing the coefficient field \f$\mathbb{Z}/p\mathbb{Z}\f$
+/** \brief Structure representing the coefficient field \f$\mathbb{Z}/p\mathbb{Z}\f$
  *
  * \implements CoefficientField
  * \ingroup persistent_cohomology
diff --git a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Multi_field.h b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Multi_field.h
index 5f987545..38bc08d1 100644
--- a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Multi_field.h
+++ b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Multi_field.h
@@ -32,8 +32,7 @@ namespace Gudhi {
 
 namespace persistent_cohomology {
 
-/** \class Multi_field Multi_field.h gudhi/Persistent_cohomology/Multi_field.h
- * \brief Structure representing coefficients in a set of finite fields simultaneously
+/** \brief Structure representing coefficients in a set of finite fields simultaneously
  * using the chinese remainder theorem.
  *
  * \implements CoefficientField
diff --git a/src/common/doc/Gudhi_banner.jpg b/src/common/doc/Gudhi_banner.jpg
deleted file mode 100644
index ebd3d8af..00000000
--- a/src/common/doc/Gudhi_banner.jpg
+++ /dev/null
diff --git a/src/common/doc/Gudhi_banner.png b/src/common/doc/Gudhi_banner.png
new file mode 100644
index 00000000..18e8a672
--- /dev/null
+++ b/src/common/doc/Gudhi_banner.png
diff --git a/src/common/doc/main_page.h b/src/common/doc/main_page.h
index 2f52fd7e..1e0dbcda 100644
--- a/src/common/doc/main_page.h
+++ b/src/common/doc/main_page.h
@@ -1,6 +1,6 @@
 /*! \mainpage
  *  \tableofcontents
- * \image html "Gudhi_banner.jpg" "" width=20cm
+ * \image html "Gudhi_banner.png" "" width=20cm
  * 
  * \section Introduction Introduction
  * The Gudhi library (Geometry Understanding in Higher Dimensions) is a generic open source C++ library for