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authorROUVREAU Vincent <vincent.rouvreau@inria.fr>2021-03-23 16:21:00 +0100
committerROUVREAU Vincent <vincent.rouvreau@inria.fr>2021-03-23 16:21:00 +0100
commitdcb90cc644f91265c9bd3011a89b5f0b0e9f3869 (patch)
tree91fc644348bfe65cc811d8a7ddff21a1167f26d9 /src
parent0313c98f32363bfc75162613b3cfa9b7efa4081b (diff)
Remove weighted_points, as it is overdesigned
Diffstat (limited to 'src')
-rw-r--r--src/python/doc/alpha_complex_user.rst18
-rw-r--r--src/python/gudhi/alpha_complex.pyx22
2 files changed, 12 insertions, 28 deletions
diff --git a/src/python/doc/alpha_complex_user.rst b/src/python/doc/alpha_complex_user.rst
index 5e028cdc..f59f69e7 100644
--- a/src/python/doc/alpha_complex_user.rst
+++ b/src/python/doc/alpha_complex_user.rst
@@ -191,18 +191,12 @@ Then, it is asked to display information about the alpha complex.
.. testcode::
from gudhi import AlphaComplex
- wgt_ac = AlphaComplex(weighted_points=[[[ 1., -1., -1.], 4.],
- [[-1., 1., -1.], 4.],
- [[-1., -1., 1.], 4.],
- [[ 1., 1., 1.], 4.],
- [[ 2., 2., 2.], 1.]])
- # equivalent to:
- # wgt_ac = AlphaComplex(points=[[ 1., -1., -1.],
- # [-1., 1., -1.],
- # [-1., -1., 1.],
- # [ 1., 1., 1.],
- # [ 2., 2., 2.]],
- # weights = [4., 4., 4., 4., 1.])
+ wgt_ac = AlphaComplex(points=[[ 1., -1., -1.],
+ [-1., 1., -1.],
+ [-1., -1., 1.],
+ [ 1., 1., 1.],
+ [ 2., 2., 2.]],
+ weights = [4., 4., 4., 4., 1.])
stree = wgt_ac.create_simplex_tree()
print('Weighted alpha complex is of dimension ', stree.dimension(), ' - ',
diff --git a/src/python/gudhi/alpha_complex.pyx b/src/python/gudhi/alpha_complex.pyx
index d4c4ba20..9c364b76 100644
--- a/src/python/gudhi/alpha_complex.pyx
+++ b/src/python/gudhi/alpha_complex.pyx
@@ -56,15 +56,14 @@ cdef class AlphaComplex:
cdef Alpha_complex_interface * this_ptr
# Fake constructor that does nothing but documenting the constructor
- def __init__(self, points=[], off_file='', weights=[], weight_file='', weighted_points=[],
- precision='safe'):
+ def __init__(self, points=[], off_file='', weights=[], weight_file='', precision='safe'):
"""AlphaComplex constructor.
:param points: A list of points in d-Dimension.
:type points: Iterable[Iterable[float]]
:param off_file: An `OFF file style <fileformats.html#off-file-format>`_ name.
- If an `off_file` is given with `points` or `weighted_points`, only points from the
+ If an `off_file` is given with `points` as arguments, only points from the
file are taken into account.
:type off_file: string
@@ -73,16 +72,11 @@ cdef class AlphaComplex:
:type weights: Iterable[float]
:param weight_file: A file containing a list of weights (one per line).
- If a `weight_file` is given with `weights` or `weighted_points`, only weights from the
+ If a `weight_file` is given with `weights` as arguments, only weights from the
file are taken into account.
:type weight_file: string
- :param weighted_points: A list of points in d-Dimension and its weight.
- If `weighted_points` are given with `weights` or `points`, these last ones will
- not be taken into account.
- :type weighted_points: Iterable[Iterable[float], float]
-
:param precision: Alpha complex precision can be 'fast', 'safe' or 'exact'. Default is
'safe'.
:type precision: string
@@ -92,16 +86,12 @@ cdef class AlphaComplex:
"""
# The real cython constructor
- def __cinit__(self, points = [], off_file = '', weights=[], weight_file='', weighted_points=[],
- precision = 'safe'):
- assert precision in ['fast', 'safe', 'exact'], "Alpha complex precision can only be 'fast', 'safe' or 'exact'"
+ def __cinit__(self, points = [], off_file = '', weights=[], weight_file='', precision = 'safe'):
+ assert precision in ['fast', 'safe', 'exact'], \
+ "Alpha complex precision can only be 'fast', 'safe' or 'exact'"
cdef bool fast = precision == 'fast'
cdef bool exact = precision == 'exact'
- if len(weighted_points) > 0:
- points = [wpt[0] for wpt in weighted_points]
- weights = [wpt[1] for wpt in weighted_points]
-
if off_file:
if os.path.isfile(off_file):
points = read_points_from_off_file(off_file = off_file)