diff options
| -rw-r--r-- | CMakeLists.txt | 18 | ||||
| -rw-r--r-- | data/points/generator/CMakeLists.txt | 6 | ||||
| -rw-r--r-- | src/Alpha_complex/example/CMakeLists.txt | 10 | ||||
| -rw-r--r-- | src/Alpha_complex/test/CMakeLists.txt | 11 | ||||
| -rw-r--r-- | src/CMakeLists.txt | 10 | ||||
| -rw-r--r-- | src/Persistent_cohomology/example/CMakeLists.txt | 71 | ||||
| -rw-r--r-- | src/Witness_complex/example/CMakeLists.txt | 24 | ||||
| -rw-r--r-- | src/common/example/CMakeLists.txt | 9 | ||||
| -rw-r--r-- | src/common/test/CMakeLists.txt | 8 |
9 files changed, 62 insertions, 105 deletions
diff --git a/CMakeLists.txt b/CMakeLists.txt index 9e85be8a..1d151455 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -20,9 +20,11 @@ else() find_package(GMP) if(GMP_FOUND) + message(STATUS "GMP_LIBRARIES = ${GMP_LIBRARIES}") INCLUDE_DIRECTORIES(${GMP_INCLUDE_DIR}) find_package(GMPXX) if(GMPXX_FOUND) + message(STATUS "GMPXX_LIBRARIES = ${GMPXX_LIBRARIES}") INCLUDE_DIRECTORIES(${GMPXX_INCLUDE_DIR}) endif() endif() @@ -40,6 +42,7 @@ else() unset(CGAL_FOUND) endif() if(CGAL_FOUND) + message(STATUS "CGAL version: ${CGAL_VERSION}.") include( ${CGAL_USE_FILE} ) endif() @@ -69,6 +72,13 @@ else() add_definitions(-DGUDHI_USE_TBB) endif() + find_package(Eigen3 3.1.0) + if (EIGEN3_FOUND) + message(STATUS "Eigen3 version: ${EIGEN3_VERSION}.") + include( ${EIGEN3_USE_FILE} ) + #include_directories (BEFORE "../../include") + endif (EIGEN3_FOUND) + # Required programs for unitary tests purpose FIND_PROGRAM( GCOVR_PATH gcovr ) if (GCOVR_PATH) @@ -79,10 +89,10 @@ else() if (GPROF_PATH) message("gprof found in ${GPROF_PATH}") endif() -FIND_PROGRAM( DIFF_PATH diff ) -if (DIFF_PATH) - message("diff found in ${DIFF_PATH}") -endif() + FIND_PROGRAM( DIFF_PATH diff ) + if (DIFF_PATH) + message("diff found in ${DIFF_PATH}") + endif() # BOOST ISSUE result_of vs C++11 add_definitions(-DBOOST_RESULT_OF_USE_DECLTYPE) diff --git a/data/points/generator/CMakeLists.txt b/data/points/generator/CMakeLists.txt index 13fb84fd..e29eb19c 100644 --- a/data/points/generator/CMakeLists.txt +++ b/data/points/generator/CMakeLists.txt @@ -3,13 +3,7 @@ project(Data_points_generator) if(CGAL_FOUND) if (NOT CGAL_VERSION VERSION_LESS 4.6.0) - message(STATUS "CGAL version: ${CGAL_VERSION}.") - - find_package(Eigen3 3.1.0) if (EIGEN3_FOUND) - include( ${EIGEN3_USE_FILE} ) - include_directories (BEFORE "../../include") - add_executable ( hypergenerator hypergenerator.cpp ) target_link_libraries(hypergenerator ${Boost_SYSTEM_LIBRARY}) add_test(hypergenerator_on_sphere_3000_10_5.0 ${CMAKE_CURRENT_BINARY_DIR}/hypergenerator on sphere onSphere.off 3000 10 5.0) diff --git a/src/Alpha_complex/example/CMakeLists.txt b/src/Alpha_complex/example/CMakeLists.txt index c0ecf0d1..f1c7ae97 100644 --- a/src/Alpha_complex/example/CMakeLists.txt +++ b/src/Alpha_complex/example/CMakeLists.txt @@ -5,13 +5,7 @@ project(Alpha_complex_examples) # cmake -DCGAL_DIR=~/workspace/CGAL-4.7-Ic-41 ../../.. if(CGAL_FOUND) if (NOT CGAL_VERSION VERSION_LESS 4.7.0) - message(STATUS "CGAL version: ${CGAL_VERSION}.") - - find_package(Eigen3 3.1.0) if (EIGEN3_FOUND) - message(STATUS "Eigen3 version: ${EIGEN3_VERSION}.") - include( ${EIGEN3_USE_FILE} ) - add_executable ( alphapoints Alpha_complex_from_points.cpp ) target_link_libraries(alphapoints ${Boost_SYSTEM_LIBRARY} ${Boost_THREAD_LIBRARY} ${CGAL_LIBRARY}) add_executable ( alphaoffreader Alpha_complex_from_off.cpp ) @@ -35,9 +29,9 @@ if(CGAL_FOUND) add_test(alphaoffreader_doc_32_diff_files ${DIFF_PATH} ${CMAKE_CURRENT_BINARY_DIR}/alphaoffreader_result_32.txt ${CMAKE_CURRENT_BINARY_DIR}/alphaoffreader_for_doc_32.txt) endif() else() - message(WARNING "Eigen3 not found. Version 3.1.0 is required for Alpha shapes feature.") + message(WARNING "Eigen3 not found. Version 3.1.0 is required for Alpha complex examples.") endif() else() - message(WARNING "CGAL version: ${CGAL_VERSION} is too old to compile Alpha shapes feature. Version 4.6.0 is required.") + message(WARNING "CGAL version: ${CGAL_VERSION} is too old to compile Alpha complex examples. Version 4.7.0 is required.") endif () endif() diff --git a/src/Alpha_complex/test/CMakeLists.txt b/src/Alpha_complex/test/CMakeLists.txt index dae0d45f..b0723a41 100644 --- a/src/Alpha_complex/test/CMakeLists.txt +++ b/src/Alpha_complex/test/CMakeLists.txt @@ -14,14 +14,7 @@ endif() # cmake -DCGAL_DIR=~/workspace/CGAL-4.7-Ic-41 ../../.. if(CGAL_FOUND) if (NOT CGAL_VERSION VERSION_LESS 4.7.0) - message(STATUS "CGAL version: ${CGAL_VERSION}.") - - find_package(Eigen3 3.1.0) if (EIGEN3_FOUND) - message(STATUS "Eigen3 version: ${EIGEN3_VERSION}.") - include( ${EIGEN3_USE_FILE} ) - include_directories (BEFORE "../../include") - add_executable ( AlphaComplexUT Alpha_complex_unit_test.cpp ) target_link_libraries(AlphaComplexUT ${Boost_SYSTEM_LIBRARY} ${Boost_THREAD_LIBRARY} ${CGAL_LIBRARY} ${Boost_UNIT_TEST_FRAMEWORK_LIBRARY}) if (TBB_FOUND) @@ -36,10 +29,10 @@ if(CGAL_FOUND) --log_format=XML --log_sink=${CMAKE_SOURCE_DIR}/AlphaComplexUT.xml --log_level=test_suite --report_level=no) else() - message(WARNING "Eigen3 not found. Version 3.1.0 is required for Alpha complex feature.") + message(WARNING "Eigen3 not found. Version 3.1.0 is required for Alpha complex unitary tests.") endif() else() - message(WARNING "CGAL version: ${CGAL_VERSION} is too old to compile Alpha complex feature. Version 4.6.0 is required.") + message(WARNING "CGAL version: ${CGAL_VERSION} is too old to compile Alpha complex unitary tests. Version 4.7.0 is required.") endif () endif() diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt index e55e4395..80f6e1ff 100644 --- a/src/CMakeLists.txt +++ b/src/CMakeLists.txt @@ -17,9 +17,11 @@ else() find_package(GMP) if(GMP_FOUND) + message(STATUS "GMP_LIBRARIES = ${GMP_LIBRARIES}") INCLUDE_DIRECTORIES(${GMP_INCLUDE_DIR}) find_package(GMPXX) if(GMPXX_FOUND) + message(STATUS "GMPXX_LIBRARIES = ${GMPXX_LIBRARIES}") INCLUDE_DIRECTORIES(${GMPXX_INCLUDE_DIR}) endif() endif() @@ -37,6 +39,7 @@ else() unset(CGAL_FOUND) endif() if(CGAL_FOUND) + message(STATUS "CGAL version: ${CGAL_VERSION}.") include( ${CGAL_USE_FILE} ) endif() @@ -66,6 +69,13 @@ else() add_definitions(-DGUDHI_USE_TBB) endif() + find_package(Eigen3 3.1.0) + if (EIGEN3_FOUND) + message(STATUS "Eigen3 version: ${EIGEN3_VERSION}.") + include( ${EIGEN3_USE_FILE} ) + #include_directories (BEFORE "../../include") + endif (EIGEN3_FOUND) + # BOOST ISSUE result_of vs C++11 add_definitions(-DBOOST_RESULT_OF_USE_DECLTYPE) # BOOST ISSUE with Libraries name resolution under Windows diff --git a/src/Persistent_cohomology/example/CMakeLists.txt b/src/Persistent_cohomology/example/CMakeLists.txt index 5fb4ba12..94b9fbfa 100644 --- a/src/Persistent_cohomology/example/CMakeLists.txt +++ b/src/Persistent_cohomology/example/CMakeLists.txt @@ -36,11 +36,7 @@ add_test(persistence_from_file_3_2_0 ${CMAKE_CURRENT_BINARY_DIR}/persistence_fro add_test(persistence_from_file_3_3_100 ${CMAKE_CURRENT_BINARY_DIR}/persistence_from_file ${CMAKE_SOURCE_DIR}/data/points/bunny_5000.st -p 3 -m 100) if(GMP_FOUND) - message("GMP_LIBRARIES = ${GMP_LIBRARIES}") - if(GMPXX_FOUND) - message("GMPXX_LIBRARIES = ${GMPXX_LIBRARIES}") - add_executable(rips_multifield_persistence rips_multifield_persistence.cpp ) target_link_libraries(rips_multifield_persistence ${Boost_SYSTEM_LIBRARY} ${Boost_PROGRAM_OPTIONS_LIBRARY} ${GMPXX_LIBRARIES} ${GMP_LIBRARIES}) add_executable ( performance_rips_persistence performance_rips_persistence.cpp ) @@ -56,49 +52,42 @@ else() # message(WARNING "GMP not found.") endif(GMP_FOUND) - if(CGAL_FOUND) - add_executable(alpha_complex_3d_persistence alpha_complex_3d_persistence.cpp) - target_link_libraries(alpha_complex_3d_persistence ${Boost_SYSTEM_LIBRARY} ${CGAL_LIBRARY}) - - if (TBB_FOUND) - target_link_libraries(alpha_complex_3d_persistence ${TBB_LIBRARIES}) - endif(TBB_FOUND) - add_test(alpha_complex_3d_persistence_2_0_5 ${CMAKE_CURRENT_BINARY_DIR}/alpha_complex_3d_persistence ${CMAKE_SOURCE_DIR}/data/points/tore3D_300.off 2 0.45) - +if(CGAL_FOUND) + add_executable(alpha_complex_3d_persistence alpha_complex_3d_persistence.cpp) + target_link_libraries(alpha_complex_3d_persistence ${Boost_SYSTEM_LIBRARY} ${CGAL_LIBRARY}) - if (NOT CGAL_VERSION VERSION_LESS 4.7.0) - message(STATUS "CGAL version: ${CGAL_VERSION}.") + if (TBB_FOUND) + target_link_libraries(alpha_complex_3d_persistence ${TBB_LIBRARIES}) + endif(TBB_FOUND) + add_test(alpha_complex_3d_persistence_2_0_5 ${CMAKE_CURRENT_BINARY_DIR}/alpha_complex_3d_persistence ${CMAKE_SOURCE_DIR}/data/points/tore3D_300.off 2 0.45) - find_package(Eigen3 3.1.0) - if (EIGEN3_FOUND) - message(STATUS "Eigen3 version: ${EIGEN3_VERSION}.") - include( ${EIGEN3_USE_FILE} ) - add_executable (alpha_complex_persistence alpha_complex_persistence.cpp) - target_link_libraries(alpha_complex_persistence ${Boost_SYSTEM_LIBRARY} ${CGAL_LIBRARY} ${Boost_PROGRAM_OPTIONS_LIBRARY}) + if (NOT CGAL_VERSION VERSION_LESS 4.7.0) + if (EIGEN3_FOUND) + add_executable (alpha_complex_persistence alpha_complex_persistence.cpp) + target_link_libraries(alpha_complex_persistence ${Boost_SYSTEM_LIBRARY} ${CGAL_LIBRARY} ${Boost_PROGRAM_OPTIONS_LIBRARY}) - add_executable(periodic_alpha_complex_3d_persistence periodic_alpha_complex_3d_persistence.cpp) - target_link_libraries(periodic_alpha_complex_3d_persistence ${Boost_SYSTEM_LIBRARY} ${CGAL_LIBRARY}) + add_executable(periodic_alpha_complex_3d_persistence periodic_alpha_complex_3d_persistence.cpp) + target_link_libraries(periodic_alpha_complex_3d_persistence ${Boost_SYSTEM_LIBRARY} ${CGAL_LIBRARY}) - add_executable(custom_persistence_sort custom_persistence_sort.cpp) - target_link_libraries(custom_persistence_sort ${Boost_SYSTEM_LIBRARY} ${CGAL_LIBRARY}) + add_executable(custom_persistence_sort custom_persistence_sort.cpp) + target_link_libraries(custom_persistence_sort ${Boost_SYSTEM_LIBRARY} ${CGAL_LIBRARY}) - if (TBB_FOUND) - target_link_libraries(alpha_complex_persistence ${TBB_LIBRARIES}) - target_link_libraries(periodic_alpha_complex_3d_persistence ${TBB_LIBRARIES}) - target_link_libraries(custom_persistence_sort ${TBB_LIBRARIES}) - endif(TBB_FOUND) - add_test(alpha_complex_persistence_2_0_45 ${CMAKE_CURRENT_BINARY_DIR}/alpha_complex_persistence ${CMAKE_SOURCE_DIR}/data/points/tore3D_300.off -m 0.45 -p 2) - add_test(periodic_alpha_complex_3d_persistence_2_0 ${CMAKE_CURRENT_BINARY_DIR}/periodic_alpha_complex_3d_persistence ${CMAKE_SOURCE_DIR}/data/points/grid_10_10_10_in_0_1.off ${CMAKE_SOURCE_DIR}/data/points/iso_cuboid_3_in_0_1.txt 2 0) - add_test(custom_persistence_sort ${CMAKE_CURRENT_BINARY_DIR}/custom_persistence_sort) + if (TBB_FOUND) + target_link_libraries(alpha_complex_persistence ${TBB_LIBRARIES}) + target_link_libraries(periodic_alpha_complex_3d_persistence ${TBB_LIBRARIES}) + target_link_libraries(custom_persistence_sort ${TBB_LIBRARIES}) + endif(TBB_FOUND) + add_test(alpha_complex_persistence_2_0_45 ${CMAKE_CURRENT_BINARY_DIR}/alpha_complex_persistence ${CMAKE_SOURCE_DIR}/data/points/tore3D_300.off -m 0.45 -p 2) + add_test(periodic_alpha_complex_3d_persistence_2_0 ${CMAKE_CURRENT_BINARY_DIR}/periodic_alpha_complex_3d_persistence ${CMAKE_SOURCE_DIR}/data/points/grid_10_10_10_in_0_1.off ${CMAKE_SOURCE_DIR}/data/points/iso_cuboid_3_in_0_1.txt 2 0) + add_test(custom_persistence_sort ${CMAKE_CURRENT_BINARY_DIR}/custom_persistence_sort) - else() - message(WARNING "Eigen3 not found. Version 3.1.0 is required for Alpha shapes feature.") - endif(EIGEN3_FOUND) else() - message(WARNING "CGAL version: ${CGAL_VERSION} is too old to compile Alpha shapes feature. Version 4.6.0 is required.") - endif () + message(WARNING "Eigen3 not found. Version 3.1.0 is required for Alpha complex persistence examples.") + endif(EIGEN3_FOUND) else() - # message(WARNING "CGAL not found.") - endif(CGAL_FOUND) - + message(WARNING "CGAL version: ${CGAL_VERSION} is too old to compile Alpha complex persistence examples. Version 4.7.0 is required.") + endif () +else() + # message(WARNING "CGAL not found.") +endif(CGAL_FOUND) diff --git a/src/Witness_complex/example/CMakeLists.txt b/src/Witness_complex/example/CMakeLists.txt index e6a916cd..48ba9279 100644 --- a/src/Witness_complex/example/CMakeLists.txt +++ b/src/Witness_complex/example/CMakeLists.txt @@ -7,31 +7,7 @@ project(Witness_complex_examples) if(CGAL_FOUND) if (NOT CGAL_VERSION VERSION_LESS 4.6.0) - message(STATUS "CGAL version: ${CGAL_VERSION}.") - - include( ${CGAL_USE_FILE} ) - # In CMakeLists.txt, when include(${CGAL_USE_FILE}), CXX_FLAGS are overwritten. - # cf. http://doc.cgal.org/latest/Manual/installation.html#title40 - # A workaround is to add "-std=c++11" again. - # A fix would be to use https://cmake.org/cmake/help/v3.1/prop_gbl/CMAKE_CXX_KNOWN_FEATURES.html - # or even better https://cmake.org/cmake/help/v3.1/variable/CMAKE_CXX_STANDARD.html - # but it implies to use cmake version 3.1 at least. - if(NOT MSVC) - include(CheckCXXCompilerFlag) - CHECK_CXX_COMPILER_FLAG(-std=c++11 COMPILER_SUPPORTS_CXX11) - if(COMPILER_SUPPORTS_CXX11) - set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++11") - endif() - endif() - # - End of workaround - - find_package(Eigen3 3.1.0) if (EIGEN3_FOUND) - message(STATUS "Eigen3 version: ${EIGEN3_VERSION}.") - include( ${EIGEN3_USE_FILE} ) - message(STATUS "Eigen3 use file: ${EIGEN3_USE_FILE}.") - include_directories (BEFORE "../../include") - add_executable ( witness_complex_sphere witness_complex_sphere.cpp ) target_link_libraries(witness_complex_sphere ${Boost_SYSTEM_LIBRARY} ${CGAL_LIBRARY}) add_test( witness_complex_sphere_10 ${CMAKE_CURRENT_BINARY_DIR}/witness_complex_sphere 10) diff --git a/src/common/example/CMakeLists.txt b/src/common/example/CMakeLists.txt index 59ee12c4..4ea8c9cb 100644 --- a/src/common/example/CMakeLists.txt +++ b/src/common/example/CMakeLists.txt @@ -8,19 +8,14 @@ if(CGAL_FOUND) add_test(cgal3Doffreader ${CMAKE_CURRENT_BINARY_DIR}/cgal3Doffreader ${CMAKE_SOURCE_DIR}/data/points/tore3D_300.off) if (NOT CGAL_VERSION VERSION_LESS 4.7.0) - find_package(Eigen3 3.1.0) if (EIGEN3_FOUND) - message(STATUS "Eigen3 version: ${EIGEN3_VERSION}.") - include( ${EIGEN3_USE_FILE} ) - add_executable ( cgaloffreader CGAL_points_off_reader.cpp ) target_link_libraries(cgaloffreader ${Boost_SYSTEM_LIBRARY} ${CGAL_LIBRARY}) add_test(cgaloffreader ${CMAKE_CURRENT_BINARY_DIR}/cgaloffreader ${CMAKE_SOURCE_DIR}/data/points/alphacomplexdoc.off) - else() - message(WARNING "Eigen3 not found. Version 3.1.0 is required for Alpha shapes feature.") + message(WARNING "Eigen3 not found. Version 3.1.0 is required for cgaloffreader example.") endif() else() - message(WARNING "CGAL version: ${CGAL_VERSION} is too old to compile Alpha shapes feature. Version 4.6.0 is required.") + message(WARNING "CGAL version: ${CGAL_VERSION} is too old to compile cgaloffreader example. Version 4.7.0 is required.") endif () endif() diff --git a/src/common/test/CMakeLists.txt b/src/common/test/CMakeLists.txt index 5f9c5dde..0a88cf8e 100644 --- a/src/common/test/CMakeLists.txt +++ b/src/common/test/CMakeLists.txt @@ -13,11 +13,7 @@ endif() # need CGAL 4.7 if(CGAL_FOUND) if (NOT CGAL_VERSION VERSION_LESS 4.7.0) - find_package(Eigen3 3.1.0) if (EIGEN3_FOUND) - message(STATUS "Eigen3 version: ${EIGEN3_VERSION}.") - include( ${EIGEN3_USE_FILE} ) - add_executable ( poffreader_UT points_off_reader_unit_test.cpp ) target_link_libraries(poffreader_UT ${Boost_SYSTEM_LIBRARY} ${Boost_UNIT_TEST_FRAMEWORK_LIBRARY}) @@ -30,10 +26,10 @@ if(CGAL_FOUND) --log_format=XML --log_sink=${CMAKE_SOURCE_DIR}/poffreader_UT.xml --log_level=test_suite --report_level=no) else() - message(WARNING "Eigen3 not found. Version 3.1.0 is required for Alpha shapes feature.") + message(WARNING "Eigen3 not found. Version 3.1.0 is required for points_off_reader unitary tests.") endif() else() - message(WARNING "CGAL version: ${CGAL_VERSION} is too old to compile Alpha shapes feature. Version 4.6.0 is required.") + message(WARNING "CGAL version: ${CGAL_VERSION} is too old to compile points_off_reader unitary tests. Version 4.7.0 is required.") endif () endif() |